mRNA_H-paniculata_contig22165.5876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22165.5876.1
Unique NamemRNA_H-paniculata_contig22165.5876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22165.5876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22165contigH-paniculata_contig22165:2723..3727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size298
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.0550303-CDS-H-paniculata_contig22165:2722..28061622929611.0550303-CDS-H-paniculata_contig22165:2722..2806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 2723..2806 +
1691480935.1463988-CDS-H-paniculata_contig22165:2722..28061691480935.1463988-CDS-H-paniculata_contig22165:2722..2806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 2723..2806 +
1622929611.0712967-CDS-H-paniculata_contig22165:3513..37261622929611.0712967-CDS-H-paniculata_contig22165:3513..3726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 3514..3726 +
1691480935.157814-CDS-H-paniculata_contig22165:3513..37261691480935.157814-CDS-H-paniculata_contig22165:3513..3726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22165 3514..3726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22165.5876.1prot_H-paniculata_contig22165.5876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22165 2723..3726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22165.5876.1

>prot_H-paniculata_contig22165.5876.1 ID=prot_H-paniculata_contig22165.5876.1|Name=mRNA_H-paniculata_contig22165.5876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
AGSALKLHSSPVSPGLSARSGLTSPATPVSTRPTAPQPTQEIASLCWQRE
RNTTGPCRKCSRKHTNVSILFFYLSDGKILTWLLLLLLMVQRPRTREDG
back to top

mRNA from alignment at H-paniculata_contig22165:2723..3727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22165.5876.1 ID=mRNA_H-paniculata_contig22165.5876.1|Name=mRNA_H-paniculata_contig22165.5876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-paniculata_contig22165:2723..3727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGATCTGCTTTGAAACTGCATTCGTCGCCGGTCTCTCCCGGCCTCTC
AGCTAGAAGTGGTCTTACCTCTCCGGCAACACCGGTAGGTGGGTCGAATA
CTTGTAGCAGGGCTAGACGTGGGCTTGTGCTGAAGTTAACCATGGACAAT
ACGTATTTCCAGGTAGCGCCTTGGTTGGCCTTTTCCGGGGTCATTTGCGA
TGGTCGGTCTCTTGGTGTGCAGTTGCAGTGTAGTTATTTCGCTACTTCTT
TCGAGTACCGTCGGGACGACGGGGAAGCGGCGATGACATATGTGTATGCA
ATTTTTTTTTCCCAGAGACGCGCCTCGGCGCTCCACTCAATCAGGCAGAA
CATGCTATGCAAAGGTACCAATTGCCGCATAAACCGTGCTTAGAAAATTG
CCATGATACTGCCGTAAGGCGTGCACAGTTTGAACTCGATGTTTTATGGG
AAATCCCGCTGTAGATGGCCTAACAGTTACAACACACAAAACATGAGTAT
GCCCCCCCCCCCCCCCTCCATGGACATATATACCGCCCCGGCAAGGCACT
TCAGCGGTACAAACCGGCTTTGTAGTGGTACAAGTTTAACAGTCTCTGAC
TTTGGCATGTTCTATCGCAAGTACACGACTACATCCAGACACTTGATCAT
AGAGCGTTAGAGAACTTGTAAATTAATTACGGGAAAATATCTGAAAGTAC
CTCGTTGAGCAAAAAAAAACAACGTCCCCTGTCCCCCCCCTCACGCACGC
GTACTCACACGTTGGTCCCTCCTGTTGCTGAGCGCACCCAGGTCAGCACT
CGCCCGACCGCGCCACAACCAACCCAGGAAATCGCGTCGTTGTGCTGGCA
GCGGGAGAGGAACACAACGGGTCCGTGCCGGAAGTGCTCGAGGAAGCACA
CAAACGTCTCCATCCTCTTTTTTTACTTATCAGACGGGAAGATCCTGACG
TGGCTACTGCTGCTGCTCTTGATGGTACAGAGACCGAGGACAAGGGAGGA
CGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22165:2723..3727+

>mRNA_H-paniculata_contig22165.5876.1 ID=mRNA_H-paniculata_contig22165.5876.1|Name=mRNA_H-paniculata_contig22165.5876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig22165:2723..3727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGATCTGCTTTGAAACTGCATTCGTCGCCGGTCTCTCCCGGCCTCTC
AGCTAGAAGTGGTCTTACCTCTCCGGCAACACCGGCTGGATCTGCTTTGA
AACTGCATTCGTCGCCGGTCTCTCCCGGCCTCTCAGCTAGAAGTGGTCTT
ACCTCTCCGGCAACACCGGTCAGCACTCGCCCGACCGCGCCACAACCAAC
CCAGGAAATCGCGTCGTTGTGCTGGCAGCGGGAGAGGAACACAACGGGTC
CGTGCCGGAAGTGCTCGAGGAAGCACACAAACGTCTCCATCCTCTTTTTT
TACTTATCAGACGGGAAGATCCTGACGTGGCTACTGCTGCTGCTCTTGAT
GGTACAGAGACCGAGGACAAGGGAGGACGGGGTCAGCACTCGCCCGACCG
CGCCACAACCAACCCAGGAAATCGCGTCGTTGTGCTGGCAGCGGGAGAGG
AACACAACGGGTCCGTGCCGGAAGTGCTCGAGGAAGCACACAAACGTCTC
CATCCTCTTTTTTTACTTATCAGACGGGAAGATCCTGACGTGGCTACTGC
TGCTGCTCTTGATGGTACAGAGACCGAGGACAAGGGAGGACGGG
back to top