mRNA_H-paniculata_contig22085.5843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22085.5843.1
Unique NamemRNA_H-paniculata_contig22085.5843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.230e-42
Identity = 103/307 (33.55%), Postives = 158/307 (51.47%), Query Frame = 1
Query:    1 IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRK-MTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISFMEATVEEH----------------------------CITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKALDVTRF 834
            +++D +  + +  R  ++F   L     +K+LGE+++Y GC+  R +    LT+ Q+ +T  +   + VV     P SSG+ LS  +  +   E      + S+  + T TRPDIA+ VR VARYC +    HW A  ++ G+ + TS  G+ + R + +  ++ GYA  DF +    R  VSGG+V  GG A+SWFSR Q     +T E                              CI +FEDN  A +LAQ+  SN  SKHID+R+HF+ +LV+ K+ +V+HV +  Q A  LTK+L    F
Sbjct:  146 VHVDDIFAVGERER-CDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 451          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.420e-40
Identity = 103/307 (33.55%), Postives = 158/307 (51.47%), Query Frame = 1
Query:    1 IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRK-MTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISFMEATVEEH----------------------------CITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKALDVTRF 834
            +++D +  + +  R  ++F   L     +K+LGE+++Y GC+  R +    LT+ Q+ +T  +   + VV     P SSG+ LS  +  +   E      + S+  + T TRPDIA+ VR VARYC +    HW A  ++ G+ + TS  G+ + R + +  ++ GYA  DF +    R  VSGG+V  GG A+SWFSR Q     +T E                              CI +FEDN  A +LAQ+  SN  SKHID+R+HF+ +LV+ K+ +V+HV +  Q A  LTK+L    F
Sbjct: 1482 VHVDDIFAVGERER-CDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 1787          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.430e-40
Identity = 103/307 (33.55%), Postives = 158/307 (51.47%), Query Frame = 1
Query:    1 IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRK-MTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISFMEATVEEH----------------------------CITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKALDVTRF 834
            +++D +  + +  R  ++F   L     +K+LGE+++Y GC+  R +    LT+ Q+ +T  +   + VV     P SSG+ LS  +  +   E      + S+  + T TRPDIA+ VR VARYC +    HW A  ++ G+ + TS  G+ + R + +  ++ GYA  DF +    R  VSGG+V  GG A+SWFSR Q     +T E                              CI +FEDN  A +LAQ+  SN  SKHID+R+HF+ +LV+ K+ +V+HV +  Q A  LTK+L    F
Sbjct: 1268 VHVDDIFAVGERER-CDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 1573          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.530e-40
Identity = 103/307 (33.55%), Postives = 158/307 (51.47%), Query Frame = 1
Query:    1 IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRK-MTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISFMEATVEEH----------------------------CITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKALDVTRF 834
            +++D +  + +  R  ++F   L     +K+LGE+++Y GC+  R +    LT+ Q+ +T  +   + VV     P SSG+ LS  +  +   E      + S+  + T TRPDIA+ VR VARYC +    HW A  ++ G+ + TS  G+ + R + +  ++ GYA  DF +    R  VSGG+V  GG A+SWFSR Q     +T E                              CI +FEDN  A +LAQ+  SN  SKHID+R+HF+ +LV+ K+ +V+HV +  Q A  LTK+L    F
Sbjct: 1336 VHVDDIFAVGERER-CDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 1641          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: H3H5K8_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K8_PHYRM)

HSP 1 Score: 151 bits (381), Expect = 2.820e-40
Identity = 96/293 (32.76%), Postives = 155/293 (52.90%), Query Frame = 1
Query:   16 VLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDV--VKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAM------PTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRKMTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISF-MEATVEE----------------HCITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKAL 819
            +++  K   +  E K  L   F MK+LG  K+ LG  +  +    TL + Q  Y   +V RF     K  D+P ++G+ LSK   P +E E+++M + P    +       T TRPDIA +V  ++R+ EN G+QHW A   V  +L+ T + G++Y   +  + +  ++  D+G++LD R  VSG +V++G   + + S+ Q +  +   V+E                +  TI+EDN  A  LAQ+ G + R+KH+D+R+HFI + V+     V +VDT  Q A +LTKAL
Sbjct:    1 MIIAAKTSEEIREVKDALRNAFKMKELGPAKFILGMEIDHDTTAGTLMIKQTRYIDDVVERFGQKHAKPVDNPCAAGLKLSKSQSPGTESERNAMRSKPYRSLIGCLLYIATCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYEGGTGSVRLTAFSDADWGSNLDDRRSVSGVIVVIGNAPVVFKSKFQRTMALSLCVQEVLWTRAMLKDMGAFQRNATTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVTVEYVDTKNQLADILTKAL 293          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.130e-40
Identity = 103/307 (33.55%), Postives = 158/307 (51.47%), Query Frame = 1
Query:    1 IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRK-MTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISFMEATVEEH----------------------------CITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKALDVTRF 834
            +++D +  + +  R  ++F   L     +K+LGE+++Y GC+  R +    LT+ Q+ +T  +   + VV     P SSG+ LS  +  +   +      + S+  + T TRPDIA+ VR VARYC +    HW A  ++ G+ + TS  G+ + R + +  ++ GYA  DF +    R  VSGG+V  GG A+SWFSR Q     +T E                              CI IFEDN  A +LAQ+  SN  SKHID+R+HF+ +LV+ K+ +V+HV +  Q A  LTK+L    F
Sbjct:  976 VHVDDIFAVGERER-CDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 1281          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 158 bits (400), Expect = 4.290e-40
Identity = 104/313 (33.23%), Postives = 160/313 (51.12%), Query Frame = 1
Query:    1 IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDV--VKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAM------PTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRKMTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQ--ISFMEATVEEHCIT-------------------------IFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKALDVTRF 834
            +Y+D +++  K  ++ +E K  L + F MK+LGEVK+ LG  +  +R   TL + Q  Y   + +RF+    K   +P  SGM L+K   P +  E+  M N P    +       T TRPD+A IV  ++R+ EN G+QHWKA   V  +L+ T E G++Y   + K+ M  Y   D+G++LD R  VSG ++M+GG  + + S+ Q  ++   A  E   ++                         ++EDN  A  LA + G N R+KH+D+R+HFI + V      V +V T  Q A +LTKAL   R 
Sbjct: 1030 LYVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDIILVGYVGTEDQLADMLTKALGTKRL 1342          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 5.060e-40
Identity = 96/274 (35.04%), Postives = 144/274 (52.55%), Query Frame = 1
Query:   85 MKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRK-MTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISFMEATVEEH----------------------------CITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKAL 819
            +K+LGE+++Y GC+  R +    LT+ Q+ +T  +   + VV     P SSG+ LS  +  +   +      + S+  + T TRPDIA+ VR VARYC +    HW A  ++ G  + TS  G+ + R + + +++ GYA  DF +    R  VSGG+V  GG A+SWFSR Q     +T E                              C  +FEDN  A +LAQ+  SN  SKHID+R+HF+ +LV+ K+ +V+HV +  Q A  LTK+L
Sbjct:   37 VKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 310          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.190e-39
Identity = 99/291 (34.02%), Postives = 149/291 (51.20%), Query Frame = 1
Query:   49 EEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRK-MTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQISFMEATVEEH----------------------------CITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLTKALDVTRF 834
            ++F   L     +K+LGE+++Y GC+  R +    LT+ Q+ +T  +   + VV     P SSG+ LS  +  +   +      + S+  + T TRPDIA+ VR VARYC +     W A  ++ G+ + TS+ G+ + R + + +++ GYA  DF T    R  VSGG+V  GG A+SWFSR Q     +T E                              CI IFEDN  A +LAQ+  SN  SKH+D+R+H + +LV+ K+ +V+HV    Q A  LTK+L    F
Sbjct:  128 DKFGADLDKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAADYGVVGGKSVPMSSGVKLSDFDADEVTTDFPFHELVGSLMWLATQTRPDIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAF 418          
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Match: A0A6A3NEQ7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NEQ7_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.530e-39
Identity = 95/281 (33.81%), Postives = 154/281 (54.80%), Query Frame = 1
Query:    1 IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNKTLTVHQRVYTKSIVNRF--DVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMNIPSMEAM------PTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSERGLMYGRESRKMTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQ--ISFMEATVEEHCIT-IFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQEKKTNVVHVDTGLQHAGVLT 810
            +Y D +++  K   D  E K  L   F MK+LG  K+ LG  +  +    T  + Q  Y   +V RF  +  K  D+P ++G+ LSK   P ++ E+++M + P    +       T TRPDIA +V  ++R+ EN G+QHW A   V  +L+   + G++Y   ++ +T+  Y+  D+GT+LD RC  SG +VM+G   + +  + Q  ++   A  E   ++ I+EDN  A  LAQ+ G + R+KH+D+R+HFI + V+     V +VDT  Q A +LT
Sbjct:  367 LYDDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTHNIKQTRYIDDVVERFGQENAKPVDNPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSPRQLGMVYQGGTQSVTLMVYSDADWGTNLDDRCAPSGVMVMIGNAPVVFKPKFQRTVTLSSAEAEYMALSLIWEDNQAAIALAQNAGYHARTKHVDIRHHFIKENVERGTVKVQYVDTKNQLADILT 647          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22085.5843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE5.230e-4233.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE2.420e-4033.55Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE2.430e-4033.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE2.530e-4033.55Integrase catalytic domain-containing protein n=1 ... [more]
H3H5K8_PHYRM2.820e-4032.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG40_9PHAE3.130e-4033.55Integrase catalytic domain-containing protein n=3 ... [more]
H3H572_PHYRM4.290e-4033.23Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A6H5KLT9_9PHAE5.060e-4035.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D6_9PHAE1.190e-3934.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6A3NEQ7_9STRA1.530e-3933.81Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22085contigH-paniculata_contig22085:2944..3870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue3.6e-37
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size843
Cds size843
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.4609132-CDS-H-paniculata_contig22085:2943..35461622929606.4609132-CDS-H-paniculata_contig22085:2943..3546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22085 2944..3546 +
1691480933.2023833-CDS-H-paniculata_contig22085:2943..35461691480933.2023833-CDS-H-paniculata_contig22085:2943..3546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22085 2944..3546 +
1622929606.4858057-CDS-H-paniculata_contig22085:3630..38701622929606.4858057-CDS-H-paniculata_contig22085:3630..3870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22085 3631..3870 +
1691480933.2156277-CDS-H-paniculata_contig22085:3630..38701691480933.2156277-CDS-H-paniculata_contig22085:3630..3870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22085 3631..3870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22085.5843.1prot_H-paniculata_contig22085.5843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22085 2944..3870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22085.5843.1

>prot_H-paniculata_contig22085.5843.1 ID=prot_H-paniculata_contig22085.5843.1|Name=mRNA_H-paniculata_contig22085.5843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=281bp
IYLDHVLVIEKAPRDTEEFKGRLATKFAMKDLGEVKYYLGCYLGRERVNK
TLTVHQRVYTKSIVNRFDVVKMSDSPSSSGMILSKQNCPKSEEEKSSMMN
IPSMEAMPTTTRPDIASIVRNVARYCENLGKQHWKAVTNVFGHLQDTSER
GLMYGRESRKMTMAGYAATDFGTDLDARCLVSGGVVMLGGVAISWFSRIQ
ISFMEATVEEHCITIFEDNGEAAKLAQHLGSNHRSKHIDLRYHFIWQLVQ
EKKTNVVHVDTGLQHAGVLTKALDVTRFGR*
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mRNA from alignment at H-paniculata_contig22085:2944..3870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22085.5843.1 ID=mRNA_H-paniculata_contig22085.5843.1|Name=mRNA_H-paniculata_contig22085.5843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig22085:2944..3870+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTACCTCGACCACGTTCTGGTCATAGAAAAGGCCCCAAGAGATACCGA AGAGTTCAAGGGAAGGCTGGCGACGAAGTTCGCCATGAAGGACCTCGGAG AGGTCAAATATTACCTGGGGTGCTATTTAGGACGAGAACGTGTGAACAAG ACGCTAACAGTACACCAACGTGTCTACACTAAGAGCATCGTGAATAGGTT CGACGTGGTAAAGATGAGTGATTCACCCTCTTCATCTGGCATGATACTTT CCAAGCAAAATTGCCCAAAATCAGAAGAAGAGAAGAGCTCGATGATGAAT ATCCCATCAATGGAGGCAATGCCAACAACAACGAGGCCGGATATTGCCAG TATCGTGCGCAACGTTGCGCGGTACTGCGAAAATCTCGGGAAACAACATT GGAAGGCGGTCACAAACGTTTTTGGGCATTTGCAGGACACATCGGAGAGA GGCCTGATGTACGGGCGTGAAAGTCGCAAGATGACGATGGCCGGGTACGC TGCCACGGATTTTGGAACAGACTTGGACGCAAGGTGTTTGGTATCAGGGG GAGTGGTGATGCTGGGAGGAGTCGCGATATCTTGGTTTTCACGAATACAG ATAGTATCAGCGCAATCATCAATCGAGGCAGAGTATATAGCGCTAGCAGA AGTAGCAAAGGAAGTAATGTTTTTGCGGCAAGTTCAGTCGTTCATGGAAG CGACTGTGGAGGAACACTGCATCACGATATTCGAGGACAACGGAGAGGCG GCGAAATTGGCACAGCATTTAGGAAGTAATCACCGCAGCAAGCACATTGA TTTACGGTATCACTTCATCTGGCAGCTTGTGCAGGAGAAGAAAACCAACG TTGTTCATGTCGACACAGGATTGCAGCACGCAGGGGTGCTCACGAAGGCT CTAGATGTAACAAGGTTTGGTAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22085:2944..3870+

>mRNA_H-paniculata_contig22085.5843.1 ID=mRNA_H-paniculata_contig22085.5843.1|Name=mRNA_H-paniculata_contig22085.5843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at H-paniculata_contig22085:2944..3870+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTACCTCGACCACGTTCTGGTCATAGAAAAGGCCCCAAGAGATACCGA
AGAGTTCAAGGGAAGGCTGGCGACGAAGTTCGCCATGAAGGACCTCGGAG
AGGTCAAATATTACCTGGGGTGCTATTTAGGACGAGAACGTGTGAACAAG
ACGCTAACAGTACACCAACGTGTCTACACTAAGAGCATCGTGAATAGGTT
CGACGTGGTAAAGATGAGTGATTCACCCTCTTCATCTGGCATGATACTTT
CCAAGCAAAATTGCCCAAAATCAGAAGAAGAGAAGAGCTCGATGATGAAT
ATCCCATCAATGGAGGCAATGCCAACAACAACGAGGCCGGATATTGCCAG
TATCGTGCGCAACGTTGCGCGGTACTGCGAAAATCTCGGGAAACAACATT
GGAAGGCGGTCACAAACGTTTTTGGGCATTTGCAGGACACATCGGAGAGA
GGCCTGATGTACGGGCGTGAAAGTCGCAAGATGACGATGGCCGGGTACGC
TGCCACGGATTTTGGAACAGACTTGGACGCAAGGTGTTTGGTATCAGGGG
GAGTGGTGATGCTGGGAGGAGTCGCGATATCTTGGTTTTCACGAATACAG
ATAATTTACCTCGACCACGTTCTGGTCATAGAAAAGGCCCCAAGAGATAC
CGAAGAGTTCAAGGGAAGGCTGGCGACGAAGTTCGCCATGAAGGACCTCG
GAGAGGTCAAATATTACCTGGGGTGCTATTTAGGACGAGAACGTGTGAAC
AAGACGCTAACAGTACACCAACGTGTCTACACTAAGAGCATCGTGAATAG
GTTCGACGTGGTAAAGATGAGTGATTCACCCTCTTCATCTGGCATGATAC
TTTCCAAGCAAAATTGCCCAAAATCAGAAGAAGAGAAGAGCTCGATGATG
AATATCCCATCAATGGAGGCAATGCCAACAACAACGAGGCCGGATATTGC
CAGTATCGTGCGCAACGTTGCGCGGTACTGCGAAAATCTCGGGAAACAAC
ATTGGAAGGCGGTCACAAACGTTTTTGGGCATTTGCAGGACACATCGGAG
AGAGGCCTGATGTACGGGCGTGAAAGTCGCAAGATGACGATGGCCGGGTA
CGCTGCCACGGATTTTGGAACAGACTTGGACGCAAGGTGTTTGGTATCAG
GGGGAGTGGTGATGCTGGGAGGAGTCGCGATATCTTGGTTTTCACGAATA
CAGATATCGTTCATGGAAGCGACTGTGGAGGAACACTGCATCACGATATT
CGAGGACAACGGAGAGGCGGCGAAATTGGCACAGCATTTAGGAAGTAATC
ACCGCAGCAAGCACATTGATTTACGGTATCACTTCATCTGGCAGCTTGTG
CAGGAGAAGAAAACCAACGTTGTTCATGTCGACACAGGATTGCAGCACGC
AGGGGTGCTCACGAAGGCTCTAGATGTAACAAGGTTTGGTAGGTAGTCGT
TCATGGAAGCGACTGTGGAGGAACACTGCATCACGATATTCGAGGACAAC
GGAGAGGCGGCGAAATTGGCACAGCATTTAGGAAGTAATCACCGCAGCAA
GCACATTGATTTACGGTATCACTTCATCTGGCAGCTTGTGCAGGAGAAGA
AAACCAACGTTGTTCATGTCGACACAGGATTGCAGCACGCAGGGGTGCTC
ACGAAGGCTCTAGATGTAACAAGGTTTGGTAGGTAG
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