mRNA_H-paniculata_contig22073.5841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22073.5841.1
Unique NamemRNA_H-paniculata_contig22073.5841.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22073.5841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22073contigH-paniculata_contig22073:1994..2362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size371
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.2313952-CDS-H-paniculata_contig22073:1993..23621622929606.2313952-CDS-H-paniculata_contig22073:1993..2362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22073 1994..2362 +
1691480933.14671-CDS-H-paniculata_contig22073:1993..23621691480933.14671-CDS-H-paniculata_contig22073:1993..2362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22073 1994..2362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22073.5841.1prot_H-paniculata_contig22073.5841.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22073 1994..2362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22073.5841.1

>prot_H-paniculata_contig22073.5841.1 ID=prot_H-paniculata_contig22073.5841.1|Name=mRNA_H-paniculata_contig22073.5841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
CKLSPPPPLDPDFDCPPMLVLPMLPPVLLVVWAVGFSGVFETRREFTLVE
CFCALAAAAFLAARAAATEVDGRAEVGGGIPGMMVGGPYIFEDYLHRRTK
GLICEQGRDDDLRRKIANDRLR*
back to top

mRNA from alignment at H-paniculata_contig22073:1994..2362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22073.5841.1 ID=mRNA_H-paniculata_contig22073.5841.1|Name=mRNA_H-paniculata_contig22073.5841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig22073:1994..2362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAGTTATCCCCCCCTCCCCCGCTTGATCCCGACTTTGATTGCCCTCC
TATGCTTGTCCTGCCCATGCTGCCGCCAGTGTTATTAGTAGTGTGGGCCG
TTGGCTTCTCGGGTGTATTTGAGACTCGGCGCGAGTTTACGCTGGTTGAG
TGTTTCTGTGCCTTGGCAGCAGCTGCGTTTCTGGCGGCCAGGGCTGCCGC
CACTGAAGTAGATGGTCGTGCAGAGGTCGGCGGGGGTATCCCGGGCATGA
TGGTGGGAGGCCCTTATATTTTTGAAGACTACCTTCACAGACGAACAAAA
GGTTTGATCTGTGAGCAGGGAAGAGATGACGATCTAAGGCGTAAAATAGC
AAATGACCGGTTAAGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22073:1994..2362+

>mRNA_H-paniculata_contig22073.5841.1 ID=mRNA_H-paniculata_contig22073.5841.1|Name=mRNA_H-paniculata_contig22073.5841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig22073:1994..2362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAGTTATCCCCCCCTCCCCCGCTTGATCCCGACTTTGATTGCCCTCC
TATGCTTGTCCTGCCCATGCTGCCGCCAGTGTTATTAGTAGTGTGGGCCG
TTGGCTTCTCGGGTGTATTTGAGACTCGGCGCGAGTTTACGCTGGTTGAG
TGTTTCTGTGCCTTGGCAGCAGCTGCGTTTCTGGCGGCCAGGGCTGCCGC
CACTGAAGTAGATGGTCGTGCAGAGGTCGGCGGGGGTATCCCGGGCATGA
TGGTGGGAGGCCCTTATATTTTTGAAGACTACCTTCACAGACGAACAAAA
GGTTTGATCTGTGAGCAGGGAAGAGATGACGATCTAAGGCGTAAAATAGC
AAATGACCGGTTAAGGTGATGCAAGTTATCCCCCCCTCCCCCGCTTGATC
CCGACTTTGATTGCCCTCCTATGCTTGTCCTGCCCATGCTGCCGCCAGTG
TTATTAGTAGTGTGGGCCGTTGGCTTCTCGGGTGTATTTGAGACTCGGCG
CGAGTTTACGCTGGTTGAGTGTTTCTGTGCCTTGGCAGCAGCTGCGTTTC
TGGCGGCCAGGGCTGCCGCCACTGAAGTAGATGGTCGTGCAGAGGTCGGC
GGGGGTATCCCGGGCATGATGGTGGGAGGCCCTTATATTTTTGAAGACTA
CCTTCACAGACGAACAAAAGGTTTGATCTGTGAGCAGGGAAGAGATGACG
ATCTAAGGCGTAAAATAGCAAATGACCGGTTAAGGTGA
back to top