mRNA_H-paniculata_contig22052.5837.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22052.5837.1
Unique NamemRNA_H-paniculata_contig22052.5837.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: D7FXU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.610e-37
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 QEYERVRALEKRGLFDFELVCPNPLPTPAVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDSVLTGMVQQGTSLAADVSIQHDDTTLDPEDAMLGTLQ 294
            +EYERVR+LEKRGLFDFE+VCP PLPT AVVVVDPFSSGSILAARVLH K RLVMVFSE+DS +  +VQQGT+L  D++IQHDD   DPE A+  T+Q
Sbjct:  555 REYERVRSLEKRGLFDFEVVCPTPLPTAAVVVVDPFSSGSILAARVLHCKLRLVMVFSEVDSPVANLVQQGTNLRPDMTIQHDDHHEDPELAIQQTMQ 652
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A6H5LB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB88_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.550e-37
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 QEYERVRALEKRGLFDFELVCPNPLPTPAVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDSVLTGMVQQGTSLAADVSIQHDDTTLDPEDAMLGTLQ 294
            +EYERVR+LEKRGLFDFE+VCP PLPT AVVVVDPFSSGSILAARVLH K RLVMVFSE+DS +  +VQQGT+L  D++IQHDD   DPE A+  T+Q
Sbjct:  314 REYERVRSLEKRGLFDFEVVCPTPLPTAAVVVVDPFSSGSILAARVLHRKLRLVMVFSEVDSPVANLVQQGTNLRPDMTIQHDDHHEDPELAIQQTMQ 411
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A835Z961_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z961_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.410e-33
Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 QEYERVRALEKRGLFDFELVCPNPLPTPAVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDSVLTGMVQQGTSLAADVSIQHDDTTLDPE 270
            ++YERVR LE RGLFDFE++CPNPLPT AVV+VDPFSSG++L+A VL  K RLVMVFSE+DS +  +VQQGT+L  DV+IQHD T  DPE
Sbjct:  541 RDYERVRELESRGLFDFEIICPNPLPTAAVVIVDPFSSGALLSALVLKHKLRLVMVFSEVDSPIANLVQQGTNLRPDVTIQHDSTHTDPE 630
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A7S0XE07_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE07_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.390e-17
Identity = 39/97 (40.21%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 QEYERVRALEKRGLFDFELVCPNPLPTPAVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDSVLTGMVQQGTSLAADVSIQHDDTTLDPEDAMLGTL 291
            +++E + +LE  GL D+ ++CP P    AVVVVDPFS+G+ +AA ++ + +RL++VFSE++S +  +V + +S    + IQHD+T  D + A+  TL
Sbjct:  502 KDFEFIHSLESNGLIDYSVICPTPPQPGAVVVVDPFSTGANIAATIIKMGYRLILVFSELNSPVAKLVSKSSSYQPTLLIQHDNTNPDQQQAISHTL 598
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A812T6K5_SYMMI (DdaF protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T6K5_SYMMI)

HSP 1 Score: 76.3 bits (186), Expect = 4.240e-14
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 QEYERVRALEKRGLFDFELVCPNPLPTPAVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDSVLTGMVQQGTSLAADVSIQHDDTTLDPEDAMLGTL 291
            ++ E +  LE   L D+ ++CP P    AVV+VDPFS+G+ LAA      +R+++VFSE+DS ++ +V +G ++   V IQH++  +D E A+  TL
Sbjct:  137 RDLETIHRLEDLQLIDYSVICPVPPVVGAVVIVDPFSTGANLAAMAASWGYRVILVFSEIDSPVSKLVAEGVAMVPMVLIQHNNRDMDKERALKETL 233
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A7S2C8J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8J8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.600e-12
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 QEYERVRALEKRGLFDFELVCPNPLPTPAVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDS 186
            ++ +++R LE  GLFDF+++CP      AVVVVDPFSSGS+LAA+V+    RLVMVF++ +S
Sbjct:  104 EDTQQIRDLETVGLFDFQIICPEVPERGAVVVVDPFSSGSLLAAQVIARDLRLVMVFADPNS 165
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A7S2C9C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9C4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.820e-7
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   85 AVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDSVLTGMVQQGTSLAADVSIQHDD 252
            AVVVVDPFSSG++LA +++      V V SE +S +  +V +GTSL  D ++QHDD
Sbjct:   87 AVVVVDPFSSGALLAEKIVASGRFCVRVLSEFNSPVATLVSEGTSLQFDATVQHDD 142
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A7S2RAR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAR7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.240e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   85 AVVVVDPFSSGSILAARVLHLKFRLVMVFSEMDSVLTGMVQQGTS-LAADVSIQHDD 252
            AVV+VDPFSSG++LA RV+      V VFSE +S +  +V +G   +  D ++QHDD
Sbjct:   99 AVVIVDPFSSGALLAGRVVRTGLHCVRVFSEFNSPVASLVSEGVGQVQFDATVQHDD 155
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A7S3JRM9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRM9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.760e-7
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   40 LFDFELVCPNPLPTPAVVVVDPFSSGSILAARVL-HLKFRLVMVFSEMDSVLTGMVQQGTSLAADVSIQH 246
            L D E VC  P+    V++VDP+S+G++LAARV  H + +L++V S+ +S +   V  GT + A  S+ H
Sbjct:  356 LLDLEFVCKKPIDRGTVIIVDPYSTGAMLAARVRSHHRKKLLVVHSDPNSPIMNYVAAGTEIRAHGSVMH 425
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BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Match: A0A485KZT6_9STRA (Aste57867_13973 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZT6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.870e-7
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 QEYERVRALEKRGLFDFELVCPNPLPTP-AVVVVDPFSSGSILAARVLHLKFRLVMVFSE----MDSVLTGMVQQGTSLAADVSIQH 246
            ++Y+R+R LE  GL+    +   P P P  VVVVDPFS+G+++A RV+   F  + ++S+    M+SV + +V +G +L    +++H
Sbjct:  554 RDYQRIRDLEYNGLWTLTPLPETPAPPPQVVVVVDPFSTGAVVAQRVVSRGFECICLYSDLLENMESVAS-LVPEGVTLRFAATVEH 639
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22052.5837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FXU1_ECTSI2.610e-3773.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB88_9PHAE3.550e-3773.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z961_9STRA5.410e-3368.89ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0XE07_9STRA3.390e-1740.21Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A812T6K5_SYMMI4.240e-1439.18DdaF protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S2C8J8_9STRA8.600e-1253.23Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2C9C4_9STRA1.820e-750.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2RAR7_9STRA6.240e-747.37Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3JRM9_9STRA8.760e-740.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A485KZT6_9STRA8.870e-735.63Aste57867_13973 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22052contigH-paniculata_contig22052:425..3188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D7FXU1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-grasp domain
EggNOG OGs2QUGS@2759,COG0439@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.7306411-CDS-H-paniculata_contig22052:424..6011622929605.7306411-CDS-H-paniculata_contig22052:424..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22052 425..601 +
1691480932.889428-CDS-H-paniculata_contig22052:424..6011691480932.889428-CDS-H-paniculata_contig22052:424..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22052 425..601 +
1622929605.7485092-CDS-H-paniculata_contig22052:3071..31881622929605.7485092-CDS-H-paniculata_contig22052:3071..3188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22052 3072..3188 +
1691480932.9080603-CDS-H-paniculata_contig22052:3071..31881691480932.9080603-CDS-H-paniculata_contig22052:3071..3188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22052 3072..3188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22052.5837.1prot_H-paniculata_contig22052.5837.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22052 425..3188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22052.5837.1

>prot_H-paniculata_contig22052.5837.1 ID=prot_H-paniculata_contig22052.5837.1|Name=mRNA_H-paniculata_contig22052.5837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
QEYERVRALEKRGLFDFELVCPNPLPTPAVVVVDPFSSGSILAARVLHLK
FRLVMVFSEMDSVLTGMVQQGTSLAADVSIQHDDTTLDPEDAMLGTLQ
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mRNA from alignment at H-paniculata_contig22052:425..3188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22052.5837.1 ID=mRNA_H-paniculata_contig22052.5837.1|Name=mRNA_H-paniculata_contig22052.5837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2764bp|location=Sequence derived from alignment at H-paniculata_contig22052:425..3188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGAGTACGAACGCGTGAGGGCCCTCGAGAAACGAGGCCTGTTCGACTT
CGAGCTGGTGTGCCCGAACCCCCTGCCTACCCCTGCCGTAGTTGTGGTCG
ATCCGTTTTCCTCTGGATCCATCCTCGCCGCGCGTGTGCTGCACCTCAAG
TTCCGCCTAGTGATGGTGTTCTCCGAGGTAAAGTTAATACAATACGGCTA
GTGTAATGAATAAATGGAAAATTAAGAAAAAATATGGCGGCATGAAAGAG
CATAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAG
CAGCAGCAGCAGGTTGCAAGGTTGGAATTTTTTACAGGGGGGCCTGTAGA
CAACGCAAAACCAATGACATATGTATATATATTCCTCCTTTGTTTTTTTG
GTCTTAGCCCGGTGTTTGTGAGAGTGTGATATAATGCGTGTTTATACCTG
TTTTAAGTTAGAGCTCTACACGCGTTGTAAATCTTCAAATTACTAATTAC
CAACAACGCCAGGCTACATGAGGAGAAAATCCCCATCCCTAATATCGAAG
TGGAATTTACCGCCTTTAATCCCTTCGGGGAGTCTTTTTTCTTTTTTCTA
ATCCTGAGTATCGATCACTGCACGTTTTGTTTTCAGCTGAAGGCATATTT
ATTATATAAGATGACAAGTCAACAAACCAATGCTCTCTTCAGGGGGGACG
AATAAAAACAAATCTTGCATAGTCGCCTCTATTGTCATTTTCCATTTTCC
AACAGCACATAACGCCATGATTTTACATTGGAAAAACAGAACCGAATCAA
ATTCATGCCAGAAAATAGATTTTCGGTGTTTGCGCACCCCGAAGGACCGG
AGTCCCAGCGACTAGGTCTTCGGCGGAAATAATGAAATATGGAAAAATCT
AGGAATATTCGCTGGAAGGTGACAAACAGTCGAATTTTTTCCAGTATTCA
AATTTCACCAACGGCGCCGAATGGACAGTGTATGTATGTCATATTTATGA
ATGAAATCGACCCCTTCGCCGTATTGAAACATGGGAATATTTCATCTCTT
TGCATGTCTTACCCCGAAATTCCAATCTGCTCCATATTAGTTCCAACAAA
AAACACAATTAAAGCATAAAAGTTTGAAACTTTTTTTGGAAATTTTCAAC
AAGGCACGTGGTCGCTAGAACTGGATTTTTTTGCAACAAGATTGGAAAAT
AACACGACCGGGATAAGACAACAAAGTAACACAGACCGGTTGATCGGTGG
CGTTACCAGGCCAAACAAAAAAAAAAAACAAGTCATATTTCACCGAAAGT
CTTGCATCATGTACCCCCCTCCCTCCTTATCGAGTGACGATTGTTTTTCT
TGAAGGCTGCTAAGTACATAGCCTCAATTCTGAGTGAGCCCAAAAAATTG
TAAAACCGTGTGGGTTAATTTGAAGTTCTGATGGTGCTATCCTTCGATTT
TTTATACAGACAGGAATGATAAGCAAGAGGTGTGTGTCTACTCCGGTCTC
TTTCATAAAATAAAAAAATAAACACCGAAAAGGCCGGGACCGGGTCCAGG
TCGTGCCGATACGTGACGTTATCGTCCCTTTCTTTGAAAATGACCGGATC
GGATCCAGGTCGTGCCGAGCCGTAATGTCATCGTCCCTTTCTTTGTACAA
GACCGGATTGGGTCCAGGTCGTTCCAATTCGTAACGTCATCTTTTGACGT
GACGTTCTGGGTCTTCTCGGGTGTATGCTGAGTTTGTGTATCGCAACCGA
TTTTTTTCGGTCATGGAGTTGATATGAATAGGTTCGAAAATTTCCACTGC
CTCGCGCCTCGTACATTTTTTTTTTATCACAGATGTCGAATGTGATACTT
GGAGGTCATAAAAGGCTCAAGTATACTACTACGGTGACAGATGATGATGT
CACGTCGATGTCACGCCGATCGATGTCACGCCCTGGAGGCCGCCCCTCCC
CCGATAACTAGTGTCCACAACCTACTCAGCGTTTTTTTCTTTTCCCCAAA
CGGCTCCAACGGTGGCGCCGATTTGAGCTCTGCTAATGCCTCACTACGTA
GGTAGGCCTGGGGTGGGCTTGGGGGTTAAGCAGTGTAATAACAGGTGCAA
AAAAAAAAGGAAACGGAATGAAACGAAACGAAACGAAACGAAACGAAACG
AAACGAAACGAAACGAAACGAAACGAAACGAAACGAAACGAAACGAAATG
AAATGAAATGAAATGAAATGAAACAAAACGGAACGAAATGAAACGAAACG
AAACGAAACGAAATGAAACGAAACGAAACGAAACGAAACGAAACGAAACG
AAACGAAACGAAATGAAACGAAACGAAACGAGATGCAAAAGAGAAAGGGA
AAGAGAAGGGGAAAGGCTACTATGGTTGATTCTTAGGTAGGTACAGACCA
ATCGTAGTAGTGTTTCCATTGTCTTTTTTGTTTTCGTATTCAACAAATGG
CTTTTCAGGGTTCTGGTCACGCCTGCACACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAAAGAAATGACTGTCTTGT
GTCAATCATCAATCATCACGTTCAACGAAGTGGGTAAAAAATGATCTGAC
CTAGCCTGCCCGCGTCTCTCGTCCTCACTGCGGGTCCGTTCGTGCAGATG
GACTCGGTATTGACGGGTATGGTTCAGCAAGGAACAAGCCTGGCGGCGGA
TGTGAGTATCCAGCACGACGATACTACCCTCGATCCTGAAGACGCTATGC
TGGGAACCCTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22052:425..3188+

>mRNA_H-paniculata_contig22052.5837.1 ID=mRNA_H-paniculata_contig22052.5837.1|Name=mRNA_H-paniculata_contig22052.5837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig22052:425..3188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGAGTACGAACGCGTGAGGGCCCTCGAGAAACGAGGCCTGTTCGACTT
CGAGCTGGTGTGCCCGAACCCCCTGCCTACCCCTGCCGTAGTTGTGGTCG
ATCCGTTTTCCTCTGGATCCATCCTCGCCGCGCGTGTGCTGCACCTCAAG
TTCCGCCTAGTGATGGTGTTCTCCGAGCAAGAGTACGAACGCGTGAGGGC
CCTCGAGAAACGAGGCCTGTTCGACTTCGAGCTGGTGTGCCCGAACCCCC
TGCCTACCCCTGCCGTAGTTGTGGTCGATCCGTTTTCCTCTGGATCCATC
CTCGCCGCGCGTGTGCTGCACCTCAAGTTCCGCCTAGTGATGGTGTTCTC
CGAGATGGACTCGGTATTGACGGGTATGGTTCAGCAAGGAACAAGCCTGG
CGGCGGATGTGAGTATCCAGCACGACGATACTACCCTCGATCCTGAAGAC
GCTATGCTGGGAACCCTGCAGATGGACTCGGTATTGACGGGTATGGTTCA
GCAAGGAACAAGCCTGGCGGCGGATGTGAGTATCCAGCACGACGATACTA
CCCTCGATCCTGAAGACGCTATGCTGGGAACCCTGCAG
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