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Homology
BLAST of mRNA_H-paniculata_contig2173.5745.1 vs. uniprot
Match: D8LE68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE68_ECTSI) HSP 1 Score: 265 bits (678), Expect = 3.570e-86 Identity = 137/221 (61.99%), Postives = 163/221 (73.76%), Query Frame = 1
Query: 16 MLSLRPVGTLAAQCEGFQSPLPLPHPSEAAVVLVGGLRASEHDSFSGACSGRIVTPQRGDGVQ------------AGGGRIDAGETPPMATMLVGERGKALLAQFYQRQSCLAIADVSRGLHRCFIPLRLAPPKGTTKGAVGGVTCMAGSQTKDSGLVFLGRTGLSMLQVVKVDPWDELGSLTHTLGDAGPVMALACHPSRPLVTACLSDGTVGLWDYQAV 642
MLS RPVGTL A GFQSPLPL HP+EA+VVLVGG RASEHDSF+GACS +IVTP G + A G D G +ATM+VGE GKALLAQFYQ+ C+AI+DV+RGLHR F+ LR++ P+G+ + A GGV CMAGS T +SGLVFLGR GLS LQ V+VDPWD LGSL+ L D+GPV+A+ACHPSR +V ACLSDGT+ LWDY +
Sbjct: 1 MLSFRPVGTLPAGSSGFQSPLPLAHPTEASVVLVGGSRASEHDSFNGACSAKIVTPTPGGEMSGSNNQANQSWGGAAGAAADGGRL--LATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRISQPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYDSA 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 673 |
| Cds size | 657 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2173.5745.1 >prot_H-paniculata_contig2173.5745.1 ID=prot_H-paniculata_contig2173.5745.1|Name=mRNA_H-paniculata_contig2173.5745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MLSLRPVGTLAAQCEGFQSPLPLPHPSEAAVVLVGGLRASEHDSFSGACS
GRIVTPQRGDGVQAGGGRIDAGETPPMATMLVGERGKALLAQFYQRQSCL
AIADVSRGLHRCFIPLRLAPPKGTTKGAVGGVTCMAGSQTKDSGLVFLGR
TGLSMLQVVKVDPWDELGSLTHTLGDAGPVMALACHPSRPLVTACLSDGT
VGLWDYQAVGEGGGGGSDG back to topmRNA from alignment at H-paniculata_contig2173:3476..8153- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2173.5745.1 ID=mRNA_H-paniculata_contig2173.5745.1|Name=mRNA_H-paniculata_contig2173.5745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4678bp|location=Sequence derived from alignment at H-paniculata_contig2173:3476..8153- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGTGCTAGGAAGATGCTGTCTCTAAGGCCCGTAGGTACCTTAGCAGC
GCAATGCGAGGGTTTTCAGAGTCCTTTGCCGCTTCCGCACCCGGTGAGGA
TGACCGGTAGATATCAGCTTGCTTTTGGGGTCATGCACACTATGTCAGTA
TGTCGAAGATGGTTTCAAATCGGGTTCTTTGTCTTCTTCGTGTGAGAGGA
CATCAAGTTGTCGGTTGGTCCTTCTCCCTGTGTATGTCGTCAGCACAGAC
AACTGTCCAGTAATCAATGTGTGTTTCGTCCTGGGTAATAGCGTCCAAAG
GTACTGTAGATTCGTCATGGTTTTTGTGAAGAAGAGAGTATGTACCAGTG
GCCGGCTCAGTCTGAGACTTTCACTCGCTGTTATCAATTACACCGGTATA
ATTTACTGTACTGTATTAGTCTGTGGTCGCTTCTTACATTTTATAGGCAA
GACGGTTTCACCGGAAAACGGATTAGAATGGGGTCCATCATGTCAAACTG
CCCCTCCGTTAGTATTTACGTGATGTCCGCGTAGTGGTCAATGCATCATC
CCTCGACATGGCTGCGGATTAGGGCGATATGCACTTTGCTTTAATACAGC
TTTGGGTCTGTAAAGTATACTTGACAAGGACATTCGCTTACCTTTTGTTA
GAGGTGTTATCGGTGCCTTGCCCGCAAGCAGTAAGCTCCTCTAAATTAAT
AAACATCACTGTTTGTCTACATACTGTCGAGCACTGCACCCTCTGCACGA
TTGGTACCGTAGGTAGAGTGCGGACAGAATGGTGAAGACAACTATAAACA
TGATCCTCGTCGACAACGATCCTACCTCTGTTCCATAAGTCTGGTTTATA
CCGATATTTTGTAACTGCGTTTGGCAATTTGGGGTTTCATGAAAAATAAA
ACGTATCATTCGATAGCCTACATGTTCAGCTTGAATGTAAATATCTTTTT
AAAAAACATCTTTAATTCGAAATGGTTGAGAACAGAGTATCTCAACACGA
TTTTTTTTTGGAAATGGCAGATTTTTTGCAGAAGCAGCCGAATAGGCCGA
AGTCGACTGAAAATCGTGGTTTTCCGTTGTTTCGCGAGCCGTACCTTCGC
ATGTACGTAGAGTTTCCAAACGAGCAATAGCGCAAACAAAGCCCTCAATC
ATACCAAGCTGATCGATTTACCAAGCTAAACCTGGCAGGGAGGGAGGACA
TGTTTTTCAGCCGGTTTCTCGGCTGCTTTTTCAAAACCTGCTATTTCCGG
GAAAAAACACGTGTTGAGATACCCGGGTCTCAACCATTTCGAATTAAAGA
TGTGTTTTTTTTAAGATATCTACATACAAGCTGAACGTGTAGGCTTTCGA
ATGATACGCTTTATTTTTAATGAAACCCCAACTTGCGAAAGATATTTACA
GAATAACATTATAAGCCAGATTTTGCGGGACAGAGGTAGTACAAGGTTAT
ATACCAGCAGCGGTACCATCCTCAACGACTTGTTCAATGGAGTTGAAACA
TCATTGAAGTCACGTGCCTGCGGACCGGTGACGAGGAAAGTGAGATCCAA
ATGTCCATTCAATTCGTACATCCTTAACCATCTCTCTCCCCCCCCCTAGT
CCTCGACCAAGGCTCATGAGCACCGTCCCCTGTTTTACGTATTTTTCTTT
TCCTGTTTTGCTTGCCGGATCTAACAAGTCGGAGGCGGCTGTTGTGCTTG
TCGGCGGTCTGCGCGCTAGCGAACATGACAGTTTTTCCGGGGCGTGCAGT
GGCAGGATTGTCACCCCACAACGGGGAGATGGGGTGCAAGCGGGGGGCGG
GCGAATCGATGCCGGTAAAATACACAGCCTAAAAATGGAAGACAAGCAGA
ACCAAAATGTGGAAAATGGCACACACACAGAGACACTTGCATTTGCACTT
GCACAAACAATAGTCGGTAGAGTGAAGGATGCGGTTTTCGAGTCGAAAAC
ATCGATGTGTGCAAAAATATCGAGTTTCACAGTCGAGAATCCAGCTCTAC
TCGAGTAGAAAGGGTTAAATGTAGGGGTTCAAGTTTGGTCTCGAACAGTC
CTGAGTCATGCCGGGGTTGGGCGTGCGTTATCGGCGCATTCTGAAAGCGA
TTTTGGACCGTTGTTCGAAAGCGACCGAAAAATTGTGTATTCGTTGTGCT
TTGATGGGTATGTCCCATATTCATCGAGGTACAACAAAGCGATGTTGAAT
TGGATTTGAAGCACGATCCAAAATCGCTTCCAAAGGGCCCCGATAAGACA
CGACCTTAATCGACAAGGAAAAACGAAAATCGAGCGACTGACCGTTACAC
GATGTCGTCAGGTATCATCACACAGTTACTGTAGCACCGTTGTTGTTCGA
CTGTGTAGTCTCGATTCTTTCATAGCCTGCCGTAAATATATTGAAATTAA
CTCGCGTTGTGGTATTTGGTATTATGCACAGGCGAAACGACTCCAATGGC
TACCATGCTGGTCGTTCATAGCCCGCCGTAAATATATTGAAATTAACTCG
CGTTGTGGTATTTGGTATTATGCACAGGCGAAACGCCTCCAATGGCTACC
ATGCTGGTCGGGGAGCGCGGGAAGGCGCTACTGGCTCAATTTTACCAGCG
ACAAAGTTGTCTCGCCATCGCGGACGTCAGTAGGTATGGATGCCAGATGC
CGGTGGGGTCGTCTTCTAGTATCACAATGTTGTACTGATTAGCCCGCCCG
CATACGTATGTGAGCCATTTACCAACCACACAGGTGATGAACACATGATA
CCTAACGGTACAAGATGTGTGAAAGGTATGCCTCTGCCTTACCCCTGCCC
CTACCCCACACCTGTTGCGTGACAACGGTAGGGTAGCTAAAAACACGCTA
CATACCTAGCCTACATAAACTGGTGCTTCGCAACCCACTAATGTGAGAAA
CTTGGACTGCCGCTTGATTTAAATTGATCTAAAGGTGCTGCGAACGCACA
GAAGGGCCTATTTTCTGTCGCGCGAGTTGACGCGTTGTCCCTCGGGCGCA
TCCACAACAGTATCTCAGCTAATTTATCTCGAATCGAATTCACGGTCTTA
ATTTTTGGTGGCGGTGTTTGCCTATTACCCCCCTGGATCCGTTATAGCGA
CAAAATTTATAGCTCGCCAACGAAAGACACCACTTGACACTGACAGTCAG
GTTAGTTCGAGTAACACGTTGGATTTTATAGGCCAACCTGTCTGCCATTC
ACGTAACACCCGCGGAGTACCCAACATGGCTTTCTCCGCCTCACCCATAT
TCACACTTGCGAGTCAACTCTCCCCCTCAATATTTCATCAAGTGCATTTA
CAAAGTACTCATTGCGTACGTGCTGCTGTGCGTTCTTCTCTCTCAACGCC
CTCACGCGTCATGCGCTGTCGATATGAAATCACCCTTCTCTCCCCTTTCC
TTTTCTTCTCGCAGGGGCCTGCACCGCTGCTTTATCCCCTTGAGACTTGC
TCCTCCCAAAGGAACCACCAAGGGCGCTGTTGGCGGAGTGACGTGTATGG
CGGGCTCTCAGACCAAAGATAGCGGATTGGTTTTCCTGGGACGCACAGGC
CTTTCCATGCTGCAGGTGTGTGTACATCTGTACAGAGAAGGGGTGCTGTC
CAATTGGGTTTGGGTGGGTGGATTTCGGCCGGAGCGAGGCGGGAGAACTC
AAAAGCCACGTATAGTCGACAGCTAGACTCCGTGGACAAAGGAAGAAGCA
AAACTCAAACCAATGAAAAGCTTCAAGCGCTACTGGCATACGCTCCGTAC
TTGAAACAGCGCGGAGCAGTATGGAAGCATCGGTAAAGGTTTTTGCCTCA
GCCTTCCGGCGGTTAAAAACCCCCCAAAAAAACAGCGCGGAGTATTTGCT
TTGTCGGGCGGGGTTGGCCGACCCTCCATTTCTCCAACAGCGTATTACAT
CATGTGCTCGCTCTCTCGCTCTTCCTCGCTTCATGTGTCTCAAGCTCTGT
CTTATTTTTTTTCTCCTATTCTTTATTGTTATTGTTATTGTTGTTTTTTT
GCTGTACGTGTGATTTCTGGACGGTGAAACACGACTTCTTATCCGTGATG
GTGTCCAACGCCGTTCATAACCTACCTCAAAAGACAAAATATGTCCTCAA
TCTTTTTGTTGGTTTTTGTTTTTTGTTTGCCGAGCGAGTTTGTGTTCTCG
TGGGTGTTCATTGCTTGCACTGAGATTTTGGTTTTATGATGGTCATGTAA
CGAAACACTTGAGATTAACTCGGGTTTTTTTCGCCCCGAAGCGAAAAGTA
TGTTGTTTCACATACGTAACAGACAGTTAGTGCTTATACCTCGTTTTACG
AGCATAAAACACGTTTCGGGACTTTTGCTTTACAACACCGTCCATGCATA
GTCCATGGCATATGATTTCGTGTGGAGAAAAACGTAATAGCCAATCAATC
AAATAACCATGGACGTATAACATCCCCCTTCCCCTCACTTTGTTTTTCTC
GGCAAACGAATCGTGCACATTTTACAACAACAAACACAACAGGTCGTCAA
GGTCGACCCCTGGGACGAGCTGGGCTCCCTCACACACACCCTCGGCGACG
CAGGCCCGGTAATGGCTTTGGCGTGTCATCCGTCCCGACCTCTTGTAACC
GCGTGCCTCTCCGATGGAACCGTGGGCTTATGGGACTACCAAGCGGTGGG
CGAGGGCGGGGGCGGGGGCAGCGACGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig2173:3476..8153- >mRNA_H-paniculata_contig2173.5745.1 ID=mRNA_H-paniculata_contig2173.5745.1|Name=mRNA_H-paniculata_contig2173.5745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig2173:3476..8153- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTCTCTAAGGCCCGTAGGTACCTTAGCAGCGCAATGCGAGGGTTT
TCAGAGTCCTTTGCCGCTTCCGCACCCGATGCTGTCTCTAAGGCCCGTAG
GTACCTTAGCAGCGCAATGCGAGGGTTTTCAGAGTCCTTTGCCGCTTCCG
CACCCGTCGGAGGCGGCTGTTGTGCTTGTCGGCGGTCTGCGCGCTAGCGA
ACATGACAGTTTTTCCGGGGCGTGCAGTGGCAGGATTGTCACCCCACAAC
GGGGAGATGGGGTGCAAGCGGGGGGCGGGCGAATCGATGCCGTCGGAGGC
GGCTGTTGTGCTTGTCGGCGGTCTGCGCGCTAGCGAACATGACAGTTTTT
CCGGGGCGTGCAGTGGCAGGATTGTCACCCCACAACGGGGAGATGGGGTG
CAAGCGGGGGGCGGGCGAATCGATGCCGGCGAAACGCCTCCAATGGCTAC
CATGCTGGTCGGGGAGCGCGGGAAGGCGCTACTGGCTCAATTTTACCAGC
GACAAAGTTGTCTCGCCATCGCGGACGTCAGTAGGCGAAACGCCTCCAAT
GGCTACCATGCTGGTCGGGGAGCGCGGGAAGGCGCTACTGGCTCAATTTT
ACCAGCGACAAAGTTGTCTCGCCATCGCGGACGTCAGTAGGGGCCTGCAC
CGCTGCTTTATCCCCTTGAGACTTGCTCCTCCCAAAGGAACCACCAAGGG
CGCTGTTGGCGGAGTGACGTGTATGGCGGGCTCTCAGACCAAAGATAGCG
GATTGGTTTTCCTGGGACGCACAGGCCTTTCCATGCTGCAGGGGCCTGCA
CCGCTGCTTTATCCCCTTGAGACTTGCTCCTCCCAAAGGAACCACCAAGG
GCGCTGTTGGCGGAGTGACGTGTATGGCGGGCTCTCAGACCAAAGATAGC
GGATTGGTTTTCCTGGGACGCACAGGCCTTTCCATGCTGCAGGTCGTCAA
GGTCGACCCCTGGGACGAGCTGGGCTCCCTCACACACACCCTCGGCGACG
CAGGCCCGGTAATGGCTTTGGCGTGTCATCCGTCCCGACCTCTTGTAACC
GCGTGCCTCTCCGATGGAACCGTGGGCTTATGGGACTACCAAGCGGTGGG
CGAGGGCGGGGGCGGGGGCAGCGACGGAGTCGTCAAGGTCGACCCCTGGG
ACGAGCTGGGCTCCCTCACACACACCCTCGGCGACGCAGGCCCGGTAATG
GCTTTGGCGTGTCATCCGTCCCGACCTCTTGTAACCGCGTGCCTCTCCGA
TGGAACCGTGGGCTTATGGGACTACCAAGCGGTGGGCGAGGGCGGGGGCG
GGGGCAGCGACGGA back to top
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