mRNA_H-paniculata_contig2163.5713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2163.5713.1
Unique NamemRNA_H-paniculata_contig2163.5713.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2163.5713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2163contigH-paniculata_contig2163:10406..10768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.4991627-CDS-H-paniculata_contig2163:10405..107681622929586.4991627-CDS-H-paniculata_contig2163:10405..10768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2163 10406..10768 +
1691480924.908778-CDS-H-paniculata_contig2163:10405..107681691480924.908778-CDS-H-paniculata_contig2163:10405..10768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2163 10406..10768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2163.5713.1prot_H-paniculata_contig2163.5713.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2163 10406..10768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2163.5713.1

>prot_H-paniculata_contig2163.5713.1 ID=prot_H-paniculata_contig2163.5713.1|Name=mRNA_H-paniculata_contig2163.5713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
SVLPRTHSQWSINYSMENMNKPPSPRILLRTTSNSGNLGVTTGDTGYTTP
RDNWGDQLVYRFSVIRMASTVINPNSFPSLSLKDDLANVHRNYIIVIPNS
LHQRDHRVHSTRMTCHHPPC*
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mRNA from alignment at H-paniculata_contig2163:10406..10768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2163.5713.1 ID=mRNA_H-paniculata_contig2163.5713.1|Name=mRNA_H-paniculata_contig2163.5713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig2163:10406..10768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGTTCTCCCAAGGACGCATAGTCAATGGTCAATCAACTATTCAATGGA
AAACATGAATAAGCCCCCCTCCCCTCGAATACTACTCCGAACAACGTCGA
ATTCGGGCAACTTGGGCGTCACCACTGGAGATACTGGGTATACAACCCCC
CGAGATAACTGGGGTGACCAGCTAGTATATCGCTTTTCGGTCATAAGAAT
GGCTTCCACCGTCATAAATCCTAACAGCTTCCCCAGCCTATCGCTGAAGG
ATGACCTAGCAAATGTACACAGAAACTATATCATCGTCATACCCAATTCT
CTCCATCAACGGGATCATCGAGTACATTCTACCCGCATGACGTGTCATCA
CCCTCCTTGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2163:10406..10768+

>mRNA_H-paniculata_contig2163.5713.1 ID=mRNA_H-paniculata_contig2163.5713.1|Name=mRNA_H-paniculata_contig2163.5713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig2163:10406..10768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGTTCTCCCAAGGACGCATAGTCAATGGTCAATCAACTATTCAATGGA
AAACATGAATAAGCCCCCCTCCCCTCGAATACTACTCCGAACAACGTCGA
ATTCGGGCAACTTGGGCGTCACCACTGGAGATACTGGGTATACAACCCCC
CGAGATAACTGGGGTGACCAGCTAGTATATCGCTTTTCGGTCATAAGAAT
GGCTTCCACCGTCATAAATCCTAACAGCTTCCCCAGCCTATCGCTGAAGG
ATGACCTAGCAAATGTACACAGAAACTATATCATCGTCATACCCAATTCT
CTCCATCAACGGGATCATCGAGTACATTCTACCCGCATGACGTGTCATCA
CCCTCCTTGCTAGTCCGTTCTCCCAAGGACGCATAGTCAATGGTCAATCA
ACTATTCAATGGAAAACATGAATAAGCCCCCCTCCCCTCGAATACTACTC
CGAACAACGTCGAATTCGGGCAACTTGGGCGTCACCACTGGAGATACTGG
GTATACAACCCCCCGAGATAACTGGGGTGACCAGCTAGTATATCGCTTTT
CGGTCATAAGAATGGCTTCCACCGTCATAAATCCTAACAGCTTCCCCAGC
CTATCGCTGAAGGATGACCTAGCAAATGTACACAGAAACTATATCATCGT
CATACCCAATTCTCTCCATCAACGGGATCATCGAGTACATTCTACCCGCA
TGACGTGTCATCACCCTCCTTGCTAG
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