mRNA_H-paniculata_contig21613.5703.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21613.5703.1
Unique NamemRNA_H-paniculata_contig21613.5703.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: D7G047_ECTSI (Topo_C_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G047_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-24
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFSYQTLLKSNSPLVD 165
            MDPR+SVAWCKRHEVPVEKVFAKTL++KFVWAMNVPPDW FSY+TL  S   ++D
Sbjct:    1 MDPRMSVAWCKRHEVPVEKVFAKTLQNKFVWAMNVPPDWNFSYETLYNSKQSVLD 55
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A836C9X0_9STRA (DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.000e-19
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFSYQTL 138
            MDPR+SVAWCKR+EVP+E++FAKTLRDKFVWAMNVPPDW F ++TL
Sbjct:  613 MDPRISVAWCKRNEVPIERIFAKTLRDKFVWAMNVPPDWRFDFETL 658
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S0FJQ3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.810e-17
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 126
            MDPR+SVAWCKR+EVP+EK+F+KTLRDKF WAM VPP WEF+
Sbjct:   58 MDPRISVAWCKRNEVPIEKIFSKTLRDKFNWAMAVPPTWEFN 99
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S2C1I1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1I1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.980e-17
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 DPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEF 123
            DPR+SVAWCKR EVPVEKVF KTLRDKFVWAM VPPDWEF
Sbjct:  134 DPRISVAWCKRCEVPVEKVFPKTLRDKFVWAMPVPPDWEF 173
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A482T3K1_9ARCH (Topo_C_assoc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3K1_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 5.790e-17
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEF 123
            MDPR+SVAWCKR EVP++KVFA+TLRDKF WAM  PPDW+F
Sbjct:    1 MDPRISVAWCKRCEVPIDKVFARTLRDKFNWAMAAPPDWKF 41
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S1ZX42_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX42_TRICV)

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 126
            MDPR+SVAWCKR+EVP+EK+F+KTLRDKF WAM VPPDWEF+
Sbjct:  584 MDPRISVAWCKRNEVPIEKIFSKTLRDKFNWAMAVPPDWEFN 625
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S4VCD4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VCD4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.540e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 126
            MDPR+SVAWCKR+EVP+EK+F+KTLRDKF WAM VPPDWEF+
Sbjct:  684 MDPRISVAWCKRNEVPIEKIFSKTLRDKFNWAMAVPPDWEFN 725
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S2XP40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XP40_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.720e-16
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 126
            MDPR+SVAWCKR+EVP+EK+F+KT+RDKF WAM VP DWEF+
Sbjct:  142 MDPRISVAWCKRNEVPIEKIFSKTMRDKFNWAMAVPSDWEFN 183
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S4JSB1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JSB1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.770e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 126
            MDPR++VAWCKR+EVP+EKVF+KTLRDKF WAM VPPDWEF+
Sbjct:  751 MDPRITVAWCKRNEVPIEKVFSKTLRDKFNWAMAVPPDWEFN 792
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BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S3PD47_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD47_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.470e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 126
            MDPR+SVAWCKR+EVP+EKVF+KTLRDKF WAM VPP+WEF+
Sbjct:  710 MDPRISVAWCKRNEVPIEKVFSKTLRDKFNWAMAVPPEWEFN 751
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G047_ECTSI1.530e-2478.18Topo_C_assoc domain-containing protein n=1 Tax=Ect... [more]
A0A836C9X0_9STRA2.000e-1980.43DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S0FJQ3_9STRA1.810e-1778.57Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2C1I1_9STRA2.980e-1790.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482T3K1_9ARCH5.790e-1778.05Topo_C_assoc domain-containing protein n=1 Tax=arc... [more]
A0A7S1ZX42_TRICV2.500e-1680.95Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4VCD4_9STRA2.540e-1680.95Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2XP40_9STRA3.720e-1676.19Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4JSB1_9STRA4.770e-1680.95Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3PD47_9STRA6.470e-1680.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21613contigH-paniculata_contig21613:1913..3844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue3.2e-19
Seed eggNOG ortholog2880.D7G047
Preferred nameTOP1
KEGG koko:K03163
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000932,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001650,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0003916,GO:0003917,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006325,GO:0006338,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007059,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009330,GO:0009987,GO:0010468,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016853,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0030554,GO:0031298,GO:0031974,GO:0031981,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032922,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0035639,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0046483,GO:0048511,GO:0050789,GO:0050896,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097100,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1990837,GO:1990904
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG3569@1,KOG0981@2759
Ec32 ortholog descriptionDNA topoisomerase I, catalytic core, alpha/beta subdomain
Ec32 orthologEc-12_007190.1
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929585.0368576-CDS-H-paniculata_contig21613:1912..22121622929585.0368576-CDS-H-paniculata_contig21613:1912..2212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21613 1913..2212 -
1691480924.5031269-CDS-H-paniculata_contig21613:1912..22121691480924.5031269-CDS-H-paniculata_contig21613:1912..2212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21613 1913..2212 -
1622929585.053905-CDS-H-paniculata_contig21613:3787..38441622929585.053905-CDS-H-paniculata_contig21613:3787..3844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21613 3788..3844 -
1691480924.516691-CDS-H-paniculata_contig21613:3787..38441691480924.516691-CDS-H-paniculata_contig21613:3787..3844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21613 3788..3844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21613.5703.1prot_H-paniculata_contig21613.5703.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21613 1913..3844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21613.5703.1

>prot_H-paniculata_contig21613.5703.1 ID=prot_H-paniculata_contig21613.5703.1|Name=mRNA_H-paniculata_contig21613.5703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFSYQTLLKSN
SPLVDPREIRAAKAAAARKAKEATTPVKAKKPAAAATPTPAPAPAPAPAA
KAATPKPDRKGKGKVKKEE
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mRNA from alignment at H-paniculata_contig21613:1913..3844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21613.5703.1 ID=mRNA_H-paniculata_contig21613.5703.1|Name=mRNA_H-paniculata_contig21613.5703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig21613:1913..3844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCTCGGGTGAGCGTGGCCTGGTGCAAGCGGCACGAGGTTCCGGT
GGAGAAGGTCAGTTTTGGTCTTGTCGTATCGTGTTTTTTTTTTTTTTGAA
GTGTGTGAAGTATGTGTTGTGAAATGCGTTATTATCCATAGCAGTATTTG
GTTTGGTTGAAAAATATATATTTTTGTTGTTTCATGTATAAAGAGCCATT
TTACCATCGTTATGATTAATGGATGAAATCAGGTTCGCTTTTTCTTTTTT
TTTTTCGTTCATCTTCAAATGGGATATGTTTTTGGAGCTTTTACTTATGG
GCGGAATTACTCGAAATTTCCTTCCTCAGCGTTGGGTTATGTTGTGAAAG
ATTTTAAAGGATTCAAGTGCATAATCCGTCTTGGAATCGGAGGTCATCCC
GAAAAGCTGCAACTAAATTGGCAGGCTTGTGACAATGATGAAGTACAATT
ACCTGAACTTGTCACGTTCTGTGTCTCAATTTTTCAGAACCGTTCTCGAA
GCTTGTCGACGAAAATAATTGTTTCAATTTTGTTTTTCGATGTGAAATAT
TCCAAGGAATCCAACGCAAGAGTCCGTTTTGTATTCGGAGGTCATCCCCA
AAAGCTACAAACTAAAAACGGTTCAGACTTGTGAGACAGAGAGAGTATAT
ATTATCAGGGCAAGAGCCAACGTATAACGCATTTAACGCCGGAAATGCAA
CTTTTCATTTTATTTTTTTTTAGCACCCCACAAGATGGTCGTGTAACGAT
TTACGGTTGATATACGGGGAGTGAAATCTAAAAAAAAAATGCCATTATCG
GACAATCGTATTGTGTCGTTGAAATGATAACTTGGTGTTGTTCATTCTAA
ATAGAGCTGTCAAATGTTGTTTTTTCCTATTTTGTGATTTGTCACGTGGA
TGCGCTTTGTTGTGTGTGTGCACTGTCGCCATGAGCATTTTTCGTGCTCA
ACACGCACCTTTGGTGCTTGTGACTTAGCACACAGGTGTTGTGAGCGCAG
GTTTGCGCCGTTCGTTGAAGGCACGTGGTTGTTAGGATTCCCCCCCCCCC
CCGGAAAGATACGAATAGTTGTAAATGGTTTTCTCAAAAAAAAAAAAATG
AAAGTACTCGCCTGAAATTCAGAATGAGCGGACACATAAAATTAAGTATC
CATTCCTGTTCATTGGATTTACGAGTATTATCAGCAGTCGTGGATGGTCC
AGGGCATATATATATACATATAGAAAAAACATGGGCTCAATCTGAAACTC
AAGCGAATACTTTCAGTTGTTTGTGGAAACCATTTGCAAGCATTCGTGTT
TATCCGGGGGGTGGATTTTTTATTTTATTTATTAGGGTGGGTAACGTGCT
GTGTGGAAAAGTTGGGGATCATGGTTTTGTCCATTTGTCTGCCCCTGCGA
GAGACGTGTGCGTGTGTTATGGGTATGTACTTAGGCTGTTGTTCGATTTT
ATTTGTGCTCTATTTGAGCAGGCCGTGTCAGGCCGTCGTACGTTGGGTAT
TCCTTATAGTGAATAAATCCAAACCCTTGAAATTCATTTTATACCACAAG
AAAAAAACTTGAAAATATGAAATATTGCCTCTTTTTTTTTTTGTGATACA
ACGTGCCACGAATAAAATGCCAAATTCAAAAGGTGTTCGCCAAGACCCTT
CGCGACAAGTTCGTGTGGGCTATGAACGTTCCCCCGGACTGGGAGTTCTC
GTACCAGACCCTCCTCAAGTCCAACTCACCTCTCGTAGATCCCAGAGAGA
TCAGGGCTGCCAAGGCCGCTGCCGCCAGGAAGGCGAAAGAGGCAACAACG
CCTGTGAAGGCGAAGAAACCCGCCGCCGCCGCCACCCCCACCCCCGCCCC
CGCCCCCGCTCCCGCCCCCGCGGCCAAAGCAGCGACCCCAAAGCCCGACA
GGAAAGGCAAGGGCAAGGTGAAGAAAGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21613:1913..3844-

>mRNA_H-paniculata_contig21613.5703.1 ID=mRNA_H-paniculata_contig21613.5703.1|Name=mRNA_H-paniculata_contig21613.5703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig21613:1913..3844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCTCGGGTGAGCGTGGCCTGGTGCAAGCGGCACGAGGTTCCGGT
GGAGAAGATGGATCCTCGGGTGAGCGTGGCCTGGTGCAAGCGGCACGAGG
TTCCGGTGGAGAAGGTGTTCGCCAAGACCCTTCGCGACAAGTTCGTGTGG
GCTATGAACGTTCCCCCGGACTGGGAGTTCTCGTACCAGACCCTCCTCAA
GTCCAACTCACCTCTCGTAGATCCCAGAGAGATCAGGGCTGCCAAGGCCG
CTGCCGCCAGGAAGGCGAAAGAGGCAACAACGCCTGTGAAGGCGAAGAAA
CCCGCCGCCGCCGCCACCCCCACCCCCGCCCCCGCCCCCGCTCCCGCCCC
CGCGGCCAAAGCAGCGACCCCAAAGCCCGACAGGAAAGGCAAGGGCAAGG
TGAAGAAAGAGGAGGTGTTCGCCAAGACCCTTCGCGACAAGTTCGTGTGG
GCTATGAACGTTCCCCCGGACTGGGAGTTCTCGTACCAGACCCTCCTCAA
GTCCAACTCACCTCTCGTAGATCCCAGAGAGATCAGGGCTGCCAAGGCCG
CTGCCGCCAGGAAGGCGAAAGAGGCAACAACGCCTGTGAAGGCGAAGAAA
CCCGCCGCCGCCGCCACCCCCACCCCCGCCCCCGCCCCCGCTCCCGCCCC
CGCGGCCAAAGCAGCGACCCCAAAGCCCGACAGGAAAGGCAAGGGCAAGG
TGAAGAAAGAGGAG
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