mRNA_H-paniculata_contig21468.5651.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21468.5651.1
Unique NamemRNA_H-paniculata_contig21468.5651.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21468.5651.1 vs. uniprot
Match: A0A6H5JSE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSE0_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 4.600e-42
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 ALLAFFQGGSATCDIQEKAMRRRQVLLNRMNKRYEYDNALWSYVRSRLEAELQGALPPPGAPPGARAPINPRASCPVYVAELTTEVLSADSQEVQMVAGMPF 306
            ALLAFFQGG + C   EK+MRRRQV+L+ MNKR++ DNALW+YVRSRLEAELQGALPPPGAPPGARAP+NPRA+CPVYVAELTTEVLSA SQE   V  M +
Sbjct:  347 ALLAFFQGGGSICGEMEKSMRRRQVVLDGMNKRHDRDNALWAYVRSRLEAELQGALPPPGAPPGARAPVNPRAACPVYVAELTTEVLSAASQEASAVDMMHY 448
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BLAST of mRNA_H-paniculata_contig21468.5651.1 vs. uniprot
Match: A0A7S2GJK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJK9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   13 FFQGGSATCDIQEKAMRRRQVLLNRMNKRYEYDNALWSYVRSRLEAELQGALPPPGAPPGARAPINPR 216
            +F  G A     +K+  + +  L     +Y  +   W  +R+RLEAEL G+ PPPGAP GA++PI+PR
Sbjct:  108 YFHSGDALISSVQKSTEKTKKALTLALSQYVEEGGAWDRMRNRLEAELLGSQPPPGAPEGAQSPISPR 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21468.5651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSE0_9PHAE4.600e-4276.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2GJK9_9STRA1.830e-739.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21468contigH-paniculata_contig21468:1868..4089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.5e-36
Seed eggNOG ortholog2880.D7FY51
KEGG koko:K12491
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0705@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.187088-CDS-H-paniculata_contig21468:1867..20261622929579.187088-CDS-H-paniculata_contig21468:1867..2026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21468 1868..2026 -
1691480922.2212667-CDS-H-paniculata_contig21468:1867..20261691480922.2212667-CDS-H-paniculata_contig21468:1867..2026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21468 1868..2026 -
1622929579.1987894-CDS-H-paniculata_contig21468:3942..40891622929579.1987894-CDS-H-paniculata_contig21468:3942..4089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21468 3943..4089 -
1691480922.2356024-CDS-H-paniculata_contig21468:3942..40891691480922.2356024-CDS-H-paniculata_contig21468:3942..4089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21468 3943..4089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21468.5651.1prot_H-paniculata_contig21468.5651.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21468 1868..4089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21468.5651.1

>prot_H-paniculata_contig21468.5651.1 ID=prot_H-paniculata_contig21468.5651.1|Name=mRNA_H-paniculata_contig21468.5651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
ALLAFFQGGSATCDIQEKAMRRRQVLLNRMNKRYEYDNALWSYVRSRLEA
ELQGALPPPGAPPGARAPINPRASCPVYVAELTTEVLSADSQEVQMVAGM
PF
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mRNA from alignment at H-paniculata_contig21468:1868..4089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21468.5651.1 ID=mRNA_H-paniculata_contig21468.5651.1|Name=mRNA_H-paniculata_contig21468.5651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2222bp|location=Sequence derived from alignment at H-paniculata_contig21468:1868..4089- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTGCTGGCGTTTTTCCAAGGAGGATCGGCCACTTGCGACATCCAAGA
AAAGGCCATGCGCAGAAGACAAGTCCTACTCAATAGGATGAACAAGCGCT
ACGAGTATGATAATGCCCTCTGGTCGTATGTGCGCTCGAGGCTCGAGGTG
GGGTAATGGGAAAGTGCGGAGGGTTGATATGCCGGGTTTTCTGCGAATTT
TATAGAGATGGTTGTTTTGGCAATTCGGGTATTCGTTCCGCAATTTCGAG
TTTTTTTGGTTTTTTTTCCGTAATTTCCGGGAGTATTATTCGTGATGTCG
GAGAGGGTGTTTTTCATCATGTTTCCATGAAGATTTTTCTTTTCCGCATG
TTCCCAAAAAGATTTTCTGTACTGTTTAGATAATTTTTGTAATATACTTA
AGGGATTTTTTTTTTTCAATTTTCAGATATTTTTTCCGTAATTTTTCGAG
AGGTTTTCCGCAATTTCAAGCTGTTCGCCTCCAATTCATAATGATGGCTC
CAGTACCATATATTTTGTTATAGGACCACTGGGTGTTAGTGCAGCTGTGG
CTCCACCCGTGCAGTGCGCGTTGTGTTGTCGATCCATACAGACAGAACGT
GCAAGGTTCGCTCAAAGGGAAAATACGGATAGATAAGGATGTCCACTAAA
AGATACGTTTTCAGAAGATAAGTTGAGCATAGAGTCGAAAATTGTTTTGG
AAGGACGGCACACACCTCACGGTAGTGTGTACTTGAGTATAGAATCTTAC
GCTATGCAAAAAAACAAATACAAGATATGTGAACAGTCAAAACGTCCTCC
TTGTAGCCGTGCGTGCTGGTTCAGGCTTGAGAGCGAGAGAAGACCGGTCG
AAACGAGTCTGATTATTCCCTTCAAATTTCAAGAGTTAGTCGTCATTTCG
CAATTTTGTCCGCTTGAGTGTCAAGTCTTGACGAAATCCGCACCAAAATT
CCACCGCCTATGAGATATGACATGATGGTCTCCGAAATAAGGAGCCGCCG
CTGTCGAATTTAGACAGTCCAGTACAGACTCGTGTTACAATATCTTTTTC
GGAAGATAACGTTAGTACAGAGTCGAAAATTATATGTCACGGAGGGATGA
TGCACACCTCGCGGTGGTGCGTTCTTGGACCATGCGGACATACACGAAGT
TGACATCGTTTTGCATGTGGATAATGACTGCAGAGCGATCCATATCCGCT
GTCATATGTTCTGTTTTTTTGTTCGGGGACAGCACGCCGAGAGTTAACAG
ACAGGGGTCGTCCCGCACTATATTTTGTTCTTGTTCGATTTTTACGCACT
TGTTTACATTTTATTTTTTTACTCTCGTCAGGTTTATTTTTGTGTCTTTT
GTATTTTAGTCTTGTCTCTTTTCCAGACGGAGTTTTGTTTAGTCATTGTA
TTCGCGTATCATCTTTTTTCTTTTTCTTAATGTTGACTTGAAGTCCATTC
GGCTGTAAATAAAAACAACAAAATTACAAGGGAAGTCAAAGATTTTTTGT
TTTTTTTTGTGGCATTTTTTTTTCCGGGCATTTCTACGGTCTTCCTCCAC
TACTGTACTAGAATGTTGCGCCCGTAAATATCTGTTTGTAAATATCGTTT
TGATCTTGTAGGACTGACTCATAGTGAGCTCTAAGTTTCGGACCCCAGTC
TACCTGCAACAACGTAGGTCTCTCTACGAAGCTTACTTCTGTTTAACAAC
CAGTTACACTTGGTAAAACTGGCGAAAATTTCTAATATATATGTATATAT
ATTGTAGCGTCACGTCGGTCCAGGTGGACTGGGATGAGGGACTCGGAGCT
CATTGTGAGCTTCACAGTACCGAATTAAAAATGCTACCAGTAGATAGATA
TATGCTGGCCCAAAAGCGCTGTAACTACTACCTTTCTGTATTTGTTGTTT
TCGAGGCTGAGTTGGCTGCGTGTCGAGTGCTTTTCTACAATACTCTAGCC
TGCTACTCTTTAGTCGTGCCGAGTTTTTAAATAACGTAGTACGTGCTCTG
TATACTCCAATCTCTTCTCCCTCATGCTTACTTACTCCACTCCATTTGTC
TGTCTTTTTTCAGGCGGAATTACAGGGAGCACTTCCCCCCCCCGGGGCGC
CGCCGGGGGCTCGAGCGCCGATTAACCCGAGGGCATCTTGTCCGGTGTAT
GTGGCGGAACTGACGACGGAGGTGCTGTCGGCGGACAGCCAAGAGGTACA
GATGGTAGCCGGAATGCCCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig21468:1868..4089-

>mRNA_H-paniculata_contig21468.5651.1 ID=mRNA_H-paniculata_contig21468.5651.1|Name=mRNA_H-paniculata_contig21468.5651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig21468:1868..4089- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTGCTGGCGTTTTTCCAAGGAGGATCGGCCACTTGCGACATCCAAGA
AAAGGCCATGCGCAGAAGACAAGTCCTACTCAATAGGATGAACAAGCGCT
ACGAGTATGATAATGCCCTCTGGTCGTATGTGCGCTCGAGGCTCGAGGCT
TTGCTGGCGTTTTTCCAAGGAGGATCGGCCACTTGCGACATCCAAGAAAA
GGCCATGCGCAGAAGACAAGTCCTACTCAATAGGATGAACAAGCGCTACG
AGTATGATAATGCCCTCTGGTCGTATGTGCGCTCGAGGCTCGAGGCGGAA
TTACAGGGAGCACTTCCCCCCCCCGGGGCGCCGCCGGGGGCTCGAGCGCC
GATTAACCCGAGGGCATCTTGTCCGGTGTATGTGGCGGAACTGACGACGG
AGGTGCTGTCGGCGGACAGCCAAGAGGTACAGATGGTAGCCGGAATGCCC
TTTGCGGAATTACAGGGAGCACTTCCCCCCCCCGGGGCGCCGCCGGGGGC
TCGAGCGCCGATTAACCCGAGGGCATCTTGTCCGGTGTATGTGGCGGAAC
TGACGACGGAGGTGCTGTCGGCGGACAGCCAAGAGGTACAGATGGTAGCC
GGAATGCCCTTT
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