mRNA_H-paniculata_contig21428.5639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21428.5639.1
Unique NamemRNA_H-paniculata_contig21428.5639.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.790e-30
Identity = 58/162 (35.80%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    1 SVTRILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            ++  I RYL+  P+  + Y  +S FEL  + DA Y +   +  +S +GSM FL+G +++FSS +Q+I+AQS++E +   +++ AK GVY   ++GELGW      ++  D +  L L   G + +RS+H++  +  LR W++  +I +DHV +    SDILT
Sbjct:  703 NIKSIFRYLRKRPNLSLVYRKDSRFELPCYSDASYAS--TKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILT 862          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 109 bits (272), Expect = 4.690e-25
Identity = 59/159 (37.11%), Postives = 98/159 (61.64%), Query Frame = 1
Query:   10 RILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            RI+RYLKG    K+TY   S  ++ G+ DA YG GD +  +STSG ++  +G  + + S  QK++AQSTTEA+ I++S   K+ ++L+ +  E+  K     +I+CD+K  + LA   N+  ++KH+   F  + D I   ++++ HVST+K  +D+LT
Sbjct:  280 RIMRYLKGTIDHKLTYGP-SRTDIIGYSDADYG-GDIDDRKSTSGYVFVKNGTALCWQSKKQKVVAQSTTEAEFISLSFATKEAIWLHALCNEITGKPNLPYQIYCDNKGAIDLARNNNHSEQTKHVDIKFKLVHDEIVNNRMLLTHVSTEKMLADVLT 436          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: UPI00142E1883 (uncharacterized protein LOC103868828 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E1883)

HSP 1 Score: 108 bits (269), Expect = 2.810e-24
Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = 1
Query:   16 LRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            LRY+KG+   ++++    +F + G+CD+ YG GD + A+ST+G ++   G  V + SSLQK++A STTEA+ IA+S   K+GV+L     ELG+    SV IFCD +  + L+    Y  R+KH+A  +  +RD I   ++ +  ++T    +DI T
Sbjct:  620 LRYIKGSVDTRLSFKSKGDFVVKGYCDSDYG-GDLDNAKSTTGMVFTAGGNPVSWRSSLQKVVALSTTEAEYIALSEAVKEGVWLKRFAEELGFPQ-DSVEIFCDSQSAIALSKNAVYHERTKHMATKYHFIRDLIKVGEVQVLKIATANNPADIFT 774          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.000e-24
Identity = 60/162 (37.04%), Postives = 101/162 (62.35%), Query Frame = 1
Query:   10 RILRYLKGAPHQKITYNHNSNFELTGFCDA-FYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFP--SVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            R+LRYL+G P  ++ +      +L  +CDA F G+ +  + RS++G ++ L+GGVV  +S+LQK+ AQS+  A++IAM+T A++ +YL G+L ELG   FP  ++ I  D    +  AG   +  RSK ++  +  LR  +N+  I++  V +++Q +DILT
Sbjct:  343 RVLRYLQGCPDMRLKFRRGQWGDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELG---FPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILT 501          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A6D2J922_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J922_9BRAS)

HSP 1 Score: 106 bits (264), Expect = 8.020e-24
Identity = 56/158 (35.44%), Postives = 98/158 (62.03%), Query Frame = 1
Query:   13 ILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            +L+YLKG   +K+ +   S+F + GF D+ Y  GD ++ RS +G ++ + G VV + S+LQ+++A STTEA+ IA+S   K+G++L G++ ELG+K   +  I+CD +  + LA    +  R+KH+A  +  +RD      + I  + T++  +D+LT
Sbjct:  317 LLKYLKGMQDKKLVFTKGSDFRVEGFSDSDY-AGDKDRRRSITGYVFRVGGNVVSWKSNLQQVVALSTTEAEYIALSEAVKEGIWLRGLVEELGFKQ-EATDIWCDSQSAICLAKNNVFHERTKHVAVKYHFIRDETEVGTVKIQKIPTERNPADMLT 472          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A1J3GF14_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GF14_NOCCA)

HSP 1 Score: 101 bits (252), Expect = 8.470e-24
Identity = 57/162 (35.19%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    1 SVTRILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            +V  +LRY+ G+   K+ Y     F + G+CD+ Y     +K RS SG M+   G  + + SSLQK+ A STTEA+ +A++  +K+ V+L G++ ELG+K   +V I+ D +  L LA    +  R+KH+A  +  +RD I  R  ++  ++T    +D+LT
Sbjct:   32 AVKWLLRYINGSLKNKLCYRKEGEFVIKGYCDSDYAA-YLDKRRSISGMMFTAGGNPISWRSSLQKVAALSTTEAEYMALTEASKEAVWLKGLMNELGFKQ-EAVNIYSDSQSALALAKNVVFHERTKHIAVKYHFIRDLITNRFFLVVKIATAYNPADMLT 191          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A1E1JXD8_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1JXD8_9HELO)

HSP 1 Score: 105 bits (261), Expect = 1.750e-23
Identity = 58/158 (36.71%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   13 ILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            +LRYL+G+    + Y ++S+  ++G+CD+ Y  GD   A+STSG  +++   +  + S LQ I+AQSTTEA+ IA+++  K+ +Y+  +L ELG+       +F D+   LLL+    +  R+KH+A  +  +RD INQ  I + ++ST KQ +D  T
Sbjct:  287 VLRYLRGSIKLGLVYINSSSKYVSGYCDSDY-AGDIGTAKSTSGYSFYIGSCLFSWKSKLQSIIAQSTTEAEYIAINSAVKEAIYIRQLLTELGYYFQERFPVFTDNNSALLLSKNPQFHERTKHIAMKYHFIRDLINQDTIDLIYISTLKQKADGFT 443          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.460e-23
Identity = 60/162 (37.04%), Postives = 101/162 (62.35%), Query Frame = 1
Query:   10 RILRYLKGAPHQKITYNHNSNFELTGFCDA-FYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFP--SVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            R+LRYL+G P   + +     ++L  +CDA F G+ +  + RS++G ++ L+GGVV  +S+LQK+ AQS+  A++IAM+T A++ +YL G+L ELG   FP  ++ I  D    +  AG   +  RSK ++  +  LR  +N+  I++  V +++Q +DILT
Sbjct:  527 RVLRYLRGCPDMPLKFRRGQ-WDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELG---FPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILT 684          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: A0A1J3IJ96_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IJ96_NOCCA)

HSP 1 Score: 104 bits (260), Expect = 4.520e-23
Identity = 57/162 (35.19%), Postives = 97/162 (59.88%), Query Frame = 1
Query:    1 SVTRILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDILT 486
            +V  ++RY+KG+   K+ Y    +F + G+CDA Y   D +K RS +G ++   G  + + SSLQK++A STTEA+ +A+S  A++ V+L G++ ELG++  P V I CD +  + LA    +  R+KH+A  +  +RD I+   + +  ++T    +DI T
Sbjct:  573 AVKWVMRYIKGSMETKLCYKKAGDFVIRGYCDADYAA-DLDKRRSITGIVFTAGGNTISWRSSLQKVVALSTTEAEYMALSDAAREAVWLKGLVSELGFEQGP-VSIHCDSQSAIALAKNAVFHERTKHVAVKYHFIRDLISFGLVQVVKIATAYNPADIFT 732          
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Match: UPI00142E0481 (secreted RxLR effector protein 161-like n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E0481)

HSP 1 Score: 100 bits (249), Expect = 4.690e-23
Identity = 52/160 (32.50%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 SVTRILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWKNFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDHVSTKKQFSDI 480
            +V  ++RY+KG+   ++++    +F + G+CD+ Y  GD ++++ST+G ++   G  V + SSLQK++A STTEA+ IA+S   K+GV+L     ELG+    ++ +FCD +  + L+    +  R+KH+A  +  +RD I   ++ +  ++T    +DI
Sbjct:   76 AVKWVMRYIKGSVDTRLSFKKKGDFVVRGYCDSDY-AGDLDQSKSTTGMVFTAGGNPVSWRSSLQKVVALSTTEAEYIALSEAVKEGVWLKRFAEELGFPQ-DTIEVFCDSQSAIALSKNAVFHERTKHVASKYHFIRDLIKVGEVQVLKIATTNNPADI 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21428.5639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV56_9PHAE8.790e-3035.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Q3EC79_9SPHI4.690e-2537.11Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]
UPI00142E18832.810e-2437.58uncharacterized protein LOC103868828 n=1 Tax=Brass... [more]
A0A6H5JRF1_9PHAE5.000e-2437.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2J922_9BRAS8.020e-2435.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3GF14_NOCCA8.470e-2435.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A1E1JXD8_9HELO1.750e-2336.71Uncharacterized protein n=1 Tax=Rhynchosporium com... [more]
A0A6H5J897_9PHAE4.460e-2337.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1J3IJ96_NOCCA4.520e-2335.19Retrovirus-related Pol polyprotein from transposon... [more]
UPI00142E04814.690e-2332.50secreted RxLR effector protein 161-like n=1 Tax=Br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21428contigH-paniculata_contig21428:315..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.1
Seed ortholog evalue8e-21
Seed eggNOG ortholog4565.Traes_5DL_4EB95019D.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.8564346-CDS-H-paniculata_contig21428:314..8001622929577.8564346-CDS-H-paniculata_contig21428:314..800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21428 315..800 +
1691480921.545574-CDS-H-paniculata_contig21428:314..8001691480921.545574-CDS-H-paniculata_contig21428:314..800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21428 315..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21428.5639.1prot_H-paniculata_contig21428.5639.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21428 315..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21428.5639.1

>prot_H-paniculata_contig21428.5639.1 ID=prot_H-paniculata_contig21428.5639.1|Name=mRNA_H-paniculata_contig21428.5639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
SVTRILRYLKGAPHQKITYNHNSNFELTGFCDAFYGTGDPEKARSTSGSM
YFLSGGVVHFSSSLQKIMAQSTTEADLIAMSTCAKQGVYLYGILGELGWK
NFPSVRIFCDDKEVLLLAGQGNYGSRSKHLAFPFAGLRDWINQRQIIIDH
VSTKKQFSDILT
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mRNA from alignment at H-paniculata_contig21428:315..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21428.5639.1 ID=mRNA_H-paniculata_contig21428.5639.1|Name=mRNA_H-paniculata_contig21428.5639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig21428:315..800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGTAACGCGTATCTTGCGCTACCTAAAAGGTGCGCCACACCAAAAAAT CACCTACAATCACAACTCCAACTTCGAGCTAACGGGCTTCTGCGACGCCT TTTACGGCACTGGTGACCCTGAGAAAGCTAGGTCAACCTCAGGGAGCATG TACTTCCTCTCCGGTGGAGTTGTTCATTTCAGTTCGAGCCTTCAGAAAAT TATGGCTCAGTCAACCACCGAGGCGGACCTAATCGCCATGAGCACCTGCG CTAAACAAGGAGTTTATCTTTACGGCATCCTCGGAGAGCTGGGATGGAAG AACTTCCCCAGCGTCCGCATCTTTTGTGACGACAAGGAGGTGCTACTTCT TGCAGGCCAAGGCAACTATGGAAGCAGGTCCAAACATCTGGCATTTCCTT TTGCCGGGCTCCGCGATTGGATTAACCAGCGACAGATAATCATCGACCAT GTCTCCACCAAGAAACAGTTCAGCGATATCTTGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig21428:315..800+

>mRNA_H-paniculata_contig21428.5639.1 ID=mRNA_H-paniculata_contig21428.5639.1|Name=mRNA_H-paniculata_contig21428.5639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig21428:315..800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGTAACGCGTATCTTGCGCTACCTAAAAGGTGCGCCACACCAAAAAAT
CACCTACAATCACAACTCCAACTTCGAGCTAACGGGCTTCTGCGACGCCT
TTTACGGCACTGGTGACCCTGAGAAAGCTAGGTCAACCTCAGGGAGCATG
TACTTCCTCTCCGGTGGAGTTGTTCATTTCAGTTCGAGCCTTCAGAAAAT
TATGGCTCAGTCAACCACCGAGGCGGACCTAATCGCCATGAGCACCTGCG
CTAAACAAGGAGTTTATCTTTACGGCATCCTCGGAGAGCTGGGATGGAAG
AACTTCCCCAGCGTCCGCATCTTTTGTGACGACAAGGAGGTGCTACTTCT
TGCAGGCCAAGGCAACTATGGAAGCAGGTCCAAACATCTGGCATTTCCTT
TTGCCGGGCTCCGCGATTGGATTAACCAGCGACAGATAATCATCGACCAT
GTCTCCACCAAGAAACAGTTCAGCGATATCTTGACCAGCGTAACGCGTAT
CTTGCGCTACCTAAAAGGTGCGCCACACCAAAAAATCACCTACAATCACA
ACTCCAACTTCGAGCTAACGGGCTTCTGCGACGCCTTTTACGGCACTGGT
GACCCTGAGAAAGCTAGGTCAACCTCAGGGAGCATGTACTTCCTCTCCGG
TGGAGTTGTTCATTTCAGTTCGAGCCTTCAGAAAATTATGGCTCAGTCAA
CCACCGAGGCGGACCTAATCGCCATGAGCACCTGCGCTAAACAAGGAGTT
TATCTTTACGGCATCCTCGGAGAGCTGGGATGGAAGAACTTCCCCAGCGT
CCGCATCTTTTGTGACGACAAGGAGGTGCTACTTCTTGCAGGCCAAGGCA
ACTATGGAAGCAGGTCCAAACATCTGGCATTTCCTTTTGCCGGGCTCCGC
GATTGGATTAACCAGCGACAGATAATCATCGACCATGTCTCCACCAAGAA
ACAGTTCAGCGATATCTTGACC
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