mRNA_H-paniculata_contig2139.5624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2139.5624.1 vs. uniprot
Match: D8LC54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC54_ECTSI) HSP 1 Score: 238 bits (607), Expect = 4.380e-63 Identity = 183/489 (37.42%), Postives = 243/489 (49.69%), Query Frame = 1
Query: 232 LLDRMLNAFLNGNTPWCLNVLSAVSSLHSPLPSAASTRTSAGDSSVPYPLPRGGTVDRKS---TLCNGAHTISDIIGGVAVAAVAPAXXXXAGRGIRARAPASN--GHYQHDDNXNDDEPITAALCLHLFRRVLQVGGAEARAIAAKVGIATAXXXXXXXXXXXXXXXXXARVGGXXXXRSNSISSEDSSGLRRVDGXXXXXWRRGRGGV-----------------GVAEVALRCGPPLTPALVVAVRLFADGYDVVVKLQANAADVEECESIDPLPLDLIRYLVSLGELLVTWVSPRGAES---GLSRRLLSSGANWSLLRAFGKML-------DFPPLPSVAAGXXXXXAWRTEDCQCRATANARAPGFMADFSLAYLHALVAVNLGGLFASAEGLTRGTLAAGIAKHIGLFELCRAMDSASDWVTFA--------------KVGGQGRCSPVPAWWALAGDATFSKELLGAIQAAQCAAVELIAR 1560
LLDR L+AFL+GNT WC +VL+ V++ H+ SAA ++ SS P +V R + ++ NG D+ GGVAV + R A AP S+ G + + +D+P+ AAL L L RRVLQ GGA+ARAIAA VG+ T R GG R+ S +S+G G + RGG G + +RCGPPLTPAL VA+RL ADGY V Q + E E P P DL YL+SLGEL++TW+S AE LSRRLL+SG++W+LLR FG+ D PP G +A D SL+YLHA+VA+ +G +S L LAAGI +++GLFE CR +DSASDW+ FA + G+ R VP++WALAGD+TFS L+ IQ AQ ++LI +
Sbjct: 96 LLDRTLDAFLSGNTEWCKSVLAGVAAKHA---SAARLEDASRSSSPPASTGNPSSVPRSNDHVSVANGTSKERDV-GGVAVMSTVAKIGLLCVRASSAAAPQSSKPGETEANGGGGEDDPLAAALRLRLLRRVLQAGGADARAIAASVGLPTGAAA--------------VRRGGE---RARESSEGESNGREEPSGVEGPIEEQQRGGXXXXXXXXXXXASDGNGEGGSGRRVRCGPPLTPALEVAMRLLADGYKCAVTRQTGVLEAEGEERRSP-PSDLTHYLISLGELVLTWLSLAPAEGVGPALSRRLLASGSSWTLLRTFGRAFRPDLARRDVPP----GNGDHIEEGHDAAAASAADATSADGRRLSDDPSLSYLHAVVAMVVGSFVSSGSNLASRALAAGIERYVGLFEFCRILDSASDWIAFAWPATAMHTPTHPGGSMAGEMR---VPSFWALAGDSTFSSRLVEIIQTAQMTMIDLIIK 555
BLAST of mRNA_H-paniculata_contig2139.5624.1 vs. uniprot
Match: A0A6H5JC49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC49_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.640e-35 Identity = 100/243 (41.15%), Postives = 129/243 (53.09%), Query Frame = 1
Query: 910 RLFADGYDVVVKLQANAADVEECESIDPLPLDLIRYLVSLGELLVTWVSPRGAES---GLSRRLLSSGANWSLLRAFGKML-------DFPP--LPSVAAGXXXXXAWRTEDCQCRATANARAPGFMADFSLAYLHALVAVNLGGLFASAEGLTRGTLAAGIAKHIGLFELCRAMDSASDWVTFA--------------KVGGQGRCSPVPAWWALAGDATFSKELLGAIQAAQCAAVELIAR 1560
RL ADGY V Q + E E + P P DL YLVSLGEL++TW+S AE LSRRLL+SG++W LLR FG+ D PP + G A A +A D SL+YLHA+VA+ +G +S L LAAGI +++GLFE CR +DSASDW+ FA V G+ R VP++WALAGD+TFS L+ IQ AQ ++LI +
Sbjct: 2 RLLADGYKCAVTRQTGVLEAEGDERLSP-PSDLTHYLVSLGELVLTWLSLSPAEGVGPALSRRLLASGSSWMLLRTFGRAFRPDLARRDIPPGNAEQIEEGHNAGAA------SAAAATSADGRRLSDDPSLSYLHAVVAMVVGSFVSSGSNLASRALAAGIERYVGLFEFCRILDSASDWIAFAWPATATHTPTHPGGSVAGEMR---VPSFWALAGDSTFSSRLVKMIQTAQMTMIDLIIK 234
BLAST of mRNA_H-paniculata_contig2139.5624.1 vs. uniprot
Match: A0A6H5JB63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB63_9PHAE) HSP 1 Score: 124 bits (310), Expect = 6.110e-25 Identity = 86/230 (37.39%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 13 QCKIRGAPISVSVHGRREFVNGKPRSALNTLFGLWLAAAKGMEFNTEREGEEGTEEEAA---TEVRQEGNREVFMMLLDRMLNAFLNGNTPWCLNVLSAVSSLHSPLPSAASTRTSAGDSSVPYPLPRGGTVDRKS-----TLCNGAHTISDIIGGVAVAAVAPAXXXXAGRGIRARAPASN--GHYQHDDNXNDDEPITAALCLHLFRRVLQVGGAEARAIAAKVGIAT 672
+C++RGAP+SV++HG+++ V+ +PR+ ++ L LWLAA+ ME T E N + LLDR L+AFL GNT WC +VL+ V++ H A++ R SVP P G + NG D+ GGVAV + R A AP S+ G + D +D+P+ AAL L L RRVLQ GGA+ARAIAA VG+ T
Sbjct: 586 RCQVRGAPMSVTLHGQKQLVSSEPRNVVDALLELWLAASSAMEDGATAAAXXXXXXXXXXXETAADNEINATAEVALLDRTLDAFLYGNTEWCKSVLAGVAAKH-----ASAARIGDASQSVPPPASTGNPSSASRGNDHVPVANGTSKEQDV-GGVAVMSTVAKIGLLCVRASSAGAPRSSTRGETEADGGGGEDDPLAAALRLRLLRRVLQAGGADARAIAASVGLPT 809 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2139.5624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2139.5624.1 >prot_H-paniculata_contig2139.5624.1 ID=prot_H-paniculata_contig2139.5624.1|Name=mRNA_H-paniculata_contig2139.5624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=595bp MEFNTEREGEEGTEEEAATEVRQEGNREVFMMLLDRMLNAFLNGNTPWCLback to top mRNA from alignment at H-paniculata_contig2139:167..9773- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2139.5624.1 ID=mRNA_H-paniculata_contig2139.5624.1|Name=mRNA_H-paniculata_contig2139.5624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9607bp|location=Sequence derived from alignment at H-paniculata_contig2139:167..9773- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2139:167..9773- >mRNA_H-paniculata_contig2139.5624.1 ID=mRNA_H-paniculata_contig2139.5624.1|Name=mRNA_H-paniculata_contig2139.5624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3570bp|location=Sequence derived from alignment at H-paniculata_contig2139:167..9773- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |