mRNA_H-paniculata_contig21369.5615.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21369.5615.1
Unique NamemRNA_H-paniculata_contig21369.5615.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21369.5615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21369contigH-paniculata_contig21369:1423..4293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929574.2531428-CDS-H-paniculata_contig21369:1422..15151622929574.2531428-CDS-H-paniculata_contig21369:1422..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21369 1423..1515 +
1691480919.875268-CDS-H-paniculata_contig21369:1422..15151691480919.875268-CDS-H-paniculata_contig21369:1422..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21369 1423..1515 +
1622929574.2882922-CDS-H-paniculata_contig21369:4108..42911622929574.2882922-CDS-H-paniculata_contig21369:4108..4291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21369 4109..4291 +
1691480919.8873122-CDS-H-paniculata_contig21369:4108..42911691480919.8873122-CDS-H-paniculata_contig21369:4108..4291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21369 4109..4291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21369.5615.1prot_H-paniculata_contig21369.5615.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21369 1423..4291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21369.5615.1

>prot_H-paniculata_contig21369.5615.1 ID=prot_H-paniculata_contig21369.5615.1|Name=mRNA_H-paniculata_contig21369.5615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
EALDSERRNGGAGWYTEEMQVVKKSLDDHHEESPKHGKGLFAAKDLKKDE
HVGLPLMGNFRLYDSGDQAVLETSVPRYRVVERVQLEKVLEP
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mRNA from alignment at H-paniculata_contig21369:1423..4293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21369.5615.1 ID=mRNA_H-paniculata_contig21369.5615.1|Name=mRNA_H-paniculata_contig21369.5615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2871bp|location=Sequence derived from alignment at H-paniculata_contig21369:1423..4293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCTCTTGACAGTGAGCGAAGGAATGGCGGAGCAGGCTGGTACACAGA
GGAGATGCAAGTAGTGAAGAAGTCGCTTGACGATCATCACGAGGTAACCC
TGTTGTGTGTTGTGTGTGTGTGTGTTGCCCTCCTCTCATTGTTTACTCCG
CAGATTTGGATACAGGGTGCATAAGGCATGGTTGCTTCCAATCCTGCTGA
TACAGTCAGTGGATTGATTCCCGTTGTCTGATCACTTGAGCTTGGTATCT
TGAGCATCAGCTTGGTCATGGGACAGTGGTGCACCGCCATGACGTATGCT
GCCCACAGGTATCTCCTCGCGCTGAACTGCTACAAAATACTGCACTGTCA
TGGCCTCATCATGCGCCTCTTCTTGTATATGCTTTCTCTGTTCCTTTTCT
CCTCAAGGATGTAGGTCGGTCGCGACAAGTCTACATTAATGCCAAGTCTA
CAGATATCCTGAAGATTCGAAATTGATCGTCAGGGTACAGCCTATTTCGA
ATATAACCCAGAATCTCCATTTCAAAGTTGGATCTCAATCTCACCACTAT
ACTGTTATATCAAAAATGAATAATTTTTATCACTATATATCGCTTCTATC
CAATCAGGTAACCAAATTTCGCTACCTGGTAAAGTAGCAGGACTGTCTTT
AGAGGCTAAAAGCAGATCAAAACCGTATAGAGCTTTTCCTGATGCTGCTT
GAATAAATTGCGCACAAACAGGTTCAACTAATATTTGTTTTTCATATTGA
CCAAATGCTACTACAGTATCATTATGAATATATAATCCCAATGTATGAAA
ACCTAAAAATATACTAACCCAACTCAAATGAGAAATAATTGCTTCTTTGT
GTTCTAGCATTCTTGCTAAAACATTTTTTTTTTTTTTCTGGATCATAATC
TCGAACAAAAAATATTGCACCATGAGCAAATGCTCCCACCATTAAAAATC
CTGCTATATATTGGTGATGAGTATATAAAGCGGCTTGAGTTGCAAAATCT
TCTGCCATAAAAGCACCTTCTTCTTCTAATAATTTGTTTGCTTCTTCAGT
AGCGGCTTTACTTAATCCTTCTTTTAAAACTCTTGGGGTATTTTCAACAA
CTTATTTTGCTTAATTTAATCCCAAGTCAGTTACAGATCTAACGACTTTT
AGAATAGAGATCTTTTTATCTTTTGGAACTTCATCTAAACTTGAAGATAT
TTCTGTCTTTTTCTGTTACAACAGAATCTTAAGATTTTACAGCTCCAGCA
CCACTCATCATCATAACCCCACCTCCAGTCGAAGAATCAAGATTAATTGT
TTCTTCTGTAACTTTAACTAAGTCAGCCGCTTCTAATAATGTTCAAGTTT
TTAATTCGTCGATTAGTTAGGTCGACCTTATTTATTTTCTAGTAGATCAG
TAATTCGTAAAATTCGTAGATATTTTGTTAAAAGTCACGACATTCTTGGT
CACTTATTATATGAATGTTTTAAAGCAGGTGACATTGTTCAAGGTTTACC
TAAATTGAACAAATCTTAGAAGTTCGTAACCCCAAAAATGAAGCTTTTTT
AGCTACAAGCCCTGGAATTATTAACAATATTAATTATACTTCAAGCCAAA
TTCTGATATCAATAATGCCTTCGAATCACTTTGAAGAATATTCATTAATG
CGTTCTTCGAAATGATTAGTTAAACAATTTCAGTTTATTTATGTAGGAGA
ATCCTGAACAGAAGGTCCAATAATTCCTCATAGTCTTCTTATACATATAT
GTTTTCAATATTTTTGCTCTTCCTTGCTTGTGTAGGTGCCAACCTGACGA
TCCAAGTACTCCATGAGACTATCCTTGATCTCTTGAAGCGGCAAGCCAAT
GGGGTACCGCTGCCTCGCCGTCTGTATTTGCAAATGGATAACTGCGGCCG
TGAGAACAGGAACAGATGGGGCTCACTAGTGTGTAGGATGTGCTTTCTAA
AAGTACAGTTGTTGTATTGGTCCAGACCAGGAAGTTCTCAGTGGTTGCTT
CGGTGAGTGTCATGGAAACGAAAGGCGGGCGTCAACCAACGTAGTGGTAG
GGTTCTGGCGAAGATCACTGTTCACGATTTATTTGTGCTTCTGCCCCTAC
CAACACTTGGTTGCAGGTCAATACAAAGGCTGATGATACGCTTGTGATGG
AAGGAAAGACTTGCACGAAGCTCACGAGGAGTCTCTCAACTATCATGCTG
GGGGCAAATACTTCGCTATGCAGCTTACAGGAGCTAGCAAAGGCACAAGA
GAGCATCAATGATGATGACGAGGATGGAGACCTGGCACATCGCACACTTG
CGGAAACCTTTGCGGCCCCCTTTGACCTGGAAATAAAGGTGAACTTTGTG
GCACATCCCTGTTCATTAGAACATTTGTCTCCGAACCATCTACTACGTTT
CATACAACAATTGTGTGAGTGTAGATGTCTGCTTGCACTTCGTTATATCT
CTGTGCGTATCATTCAAGGCCTATGTTGATGACGCCTCTGTTGGGCACTT
TGTGGTGACAGGCATTACTAATAATAATGTTGCTTACGTGCTTATCTGCT
TTGTTTGTAGTATGTATTACTACACTACTTCTTACGTACACTGTTGTCGG
GTAGTGTATGATGTGTTCTCAGCATGACAAGGTGTGGGTCTTACGAGTGA
CTCAATATTATGTTTCCGGCTGTTTCTTGGGCGCAGGAATCCCCCAAGCA
TGGCAAGGGCCTCTTTGCTGCAAAAGATTTGAAGAAGGACGAGCACGTTG
GTTTGCCACTGATGGGGAACTTCAGATTGTACGATAGTGGAGATCAAGCC
GTTCTTGAGACAAGCGTCCCACGCTACCGCGTGGTGGAGCGTGTTCAACT
GGAGAAGGTTTTGGAGCCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig21369:1423..4293+

>mRNA_H-paniculata_contig21369.5615.1 ID=mRNA_H-paniculata_contig21369.5615.1|Name=mRNA_H-paniculata_contig21369.5615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig21369:1423..4293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCTCTTGACAGTGAGCGAAGGAATGGCGGAGCAGGCTGGTACACAGA
GGAGATGCAAGTAGTGAAGAAGTCGCTTGACGATCATCACGAGGAGGCTC
TTGACAGTGAGCGAAGGAATGGCGGAGCAGGCTGGTACACAGAGGAGATG
CAAGTAGTGAAGAAGTCGCTTGACGATCATCACGAGGAATCCCCCAAGCA
TGGCAAGGGCCTCTTTGCTGCAAAAGATTTGAAGAAGGACGAGCACGTTG
GTTTGCCACTGATGGGGAACTTCAGATTGTACGATAGTGGAGATCAAGCC
GTTCTTGAGACAAGCGTCCCACGCTACCGCGTGGTGGAGCGTGTTCAACT
GGAGAAGGTTTTGGAGCCTGAATCCCCCAAGCATGGCAAGGGCCTCTTTG
CTGCAAAAGATTTGAAGAAGGACGAGCACGTTGGTTTGCCACTGATGGGG
AACTTCAGATTGTACGATAGTGGAGATCAAGCCGTTCTTGAGACAAGCGT
CCCACGCTACCGCGTGGTGGAGCGTGTTCAACTGGAGAAGGTTTTGGAGC
CT
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