mRNA_H-paniculata_contig21354.5610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21354.5610.1
Unique NamemRNA_H-paniculata_contig21354.5610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21354.5610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21354contigH-paniculata_contig21354:2..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.5776484-CDS-H-paniculata_contig21354:1..3101622929573.5776484-CDS-H-paniculata_contig21354:1..310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21354 2..310 +
1691480919.6230888-CDS-H-paniculata_contig21354:1..3101691480919.6230888-CDS-H-paniculata_contig21354:1..310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21354 2..310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.5905728-UTR-H-paniculata_contig21354:310..5631622929573.5905728-UTR-H-paniculata_contig21354:310..563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21354 311..563 +
1691480919.6327138-UTR-H-paniculata_contig21354:310..5631691480919.6327138-UTR-H-paniculata_contig21354:310..563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21354 311..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21354.5610.1prot_H-paniculata_contig21354.5610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21354 2..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21354.5610.1

>prot_H-paniculata_contig21354.5610.1 ID=prot_H-paniculata_contig21354.5610.1|Name=mRNA_H-paniculata_contig21354.5610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
SNPTTSPHRRSDSSPVSNPPVFLHRAHSDPHGAVVFLLFSERFLIRQNLP
DLCNFKPVGGFGRSSCYSWPHPHQPGIYPGVSWVRVRELPRVELIPSATW
TR*
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mRNA from alignment at H-paniculata_contig21354:2..563+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21354.5610.1 ID=mRNA_H-paniculata_contig21354.5610.1|Name=mRNA_H-paniculata_contig21354.5610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=562bp|location=Sequence derived from alignment at H-paniculata_contig21354:2..563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAACCCCACAACCTCCCCACACAGGAGAAGCGACTCTTCTCCCGTCTC
AAACCCTCCAGTCTTTCTCCACAGGGCTCACTCAGACCCTCATGGCGCGG
TCGTTTTCTTACTCTTTTCTGAGAGATTTCTGATTCGCCAAAACCTGCCA
GACCTATGCAACTTTAAGCCTGTAGGTGGTTTCGGACGATCCAGTTGTTA
CTCTTGGCCTCACCCCCATCAACCTGGGATTTACCCCGGGGTGAGTTGGG
TTAGGGTTAGGGAGTTACCCCGGGTTGAGTTAATCCCGTCCGCCACGTGG
ACGCGGTAACCATTCGGATATCCGCCCCCCCTTCAATGGAAATGACTCTA
GGTGCTTCCTCTATTTCGGTGTTGGTTACAACTTGTGAAGTGCGGTGAAT
GGGAATGGTAACATGCATTGCTCTTCTCGCCTTGGTGTCGGTAGCGGCAT
GCACAGCAACTTCCAGGGTAATCGAACATAAGAAGTCAGTTCTCTTCGAC
ATTTTTTACAAATTATCCCTTGATAGCCGCTAATCAGCAGCCATAGACAG
GGTTAGTCATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig21354:2..563+

>mRNA_H-paniculata_contig21354.5610.1 ID=mRNA_H-paniculata_contig21354.5610.1|Name=mRNA_H-paniculata_contig21354.5610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig21354:2..563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAACCCCACAACCTCCCCACACAGGAGAAGCGACTCTTCTCCCGTCTC
AAACCCTCCAGTCTTTCTCCACAGGGCTCACTCAGACCCTCATGGCGCGG
TCGTTTTCTTACTCTTTTCTGAGAGATTTCTGATTCGCCAAAACCTGCCA
GACCTATGCAACTTTAAGCCTGTAGGTGGTTTCGGACGATCCAGTTGTTA
CTCTTGGCCTCACCCCCATCAACCTGGGATTTACCCCGGGGTGAGTTGGG
TTAGGGTTAGGGAGTTACCCCGGGTTGAGTTAATCCCGTCCGCCACGTGG
ACGCGGTAATCGAACCCCACAACCTCCCCACACAGGAGAAGCGACTCTTC
TCCCGTCTCAAACCCTCCAGTCTTTCTCCACAGGGCTCACTCAGACCCTC
ATGGCGCGGTCGTTTTCTTACTCTTTTCTGAGAGATTTCTGATTCGCCAA
AACCTGCCAGACCTATGCAACTTTAAGCCTGTAGGTGGTTTCGGACGATC
CAGTTGTTACTCTTGGCCTCACCCCCATCAACCTGGGATTTACCCCGGGG
TGAGTTGGGTTAGGGTTAGGGAGTTACCCCGGGTTGAGTTAATCCCGTCC
GCCACGTGGACGCGGTAA
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