mRNA_H-paniculata_contig21232.5567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21232.5567.1
Unique NamemRNA_H-paniculata_contig21232.5567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21232.5567.1 vs. uniprot
Match: A0A6H5KQD4_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.550e-6
Identity = 23/47 (48.94%), Postives = 28/47 (59.57%), Query Frame = 1 
Query:    1 WEGRPGTSWFSQQPSVLVLDDFKCHHDQKLQESLKKKVNTDTILILG 141
            W   P      Q+PS+LVLDDFKCH D+   + L K+ NT  ILI G
Sbjct: 1253 WRLCPNHESIKQRPSILVLDDFKCHRDKAFIDDLGKRCNTSVILIPG 1299
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21232.5567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQD4_9PHAE2.550e-648.94Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21232contigH-paniculata_contig21232:2466..2648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size184
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.976143-CDS-H-paniculata_contig21232:2465..26481622929565.976143-CDS-H-paniculata_contig21232:2465..2648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21232 2466..2648 +
1691480916.7670817-CDS-H-paniculata_contig21232:2465..26481691480916.7670817-CDS-H-paniculata_contig21232:2465..2648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21232 2466..2648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21232.5567.1prot_H-paniculata_contig21232.5567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21232 2466..2648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21232.5567.1

>prot_H-paniculata_contig21232.5567.1 ID=prot_H-paniculata_contig21232.5567.1|Name=mRNA_H-paniculata_contig21232.5567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
WEGRPGTSWFSQQPSVLVLDDFKCHHDQKLQESLKKKVNTDTILILGAYQ
WLTSLARACLT
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mRNA from alignment at H-paniculata_contig21232:2466..2648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21232.5567.1 ID=mRNA_H-paniculata_contig21232.5567.1|Name=mRNA_H-paniculata_contig21232.5567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig21232:2466..2648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAGGGTCGCCCGGGGACAAGCTGGTTTAGCCAGCAACCGAGCGTGTT
GGTGCTCGACGACTTCAAGTGCCACCACGACCAGAAGCTCCAAGAGAGCT
TGAAGAAAAAGGTCAACACGGACACCATCCTCATTCTGGGGGCTTATCAG
TGGTTAACCAGCCTTGCGAGGGCATGCTTAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig21232:2466..2648+

>mRNA_H-paniculata_contig21232.5567.1 ID=mRNA_H-paniculata_contig21232.5567.1|Name=mRNA_H-paniculata_contig21232.5567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig21232:2466..2648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAGGGTCGCCCGGGGACAAGCTGGTTTAGCCAGCAACCGAGCGTGTT
GGTGCTCGACGACTTCAAGTGCCACCACGACCAGAAGCTCCAAGAGAGCT
TGAAGAAAAAGGTCAACACGGACACCATCCTCATTCTGGGGGCTTATCAG
TGGTTAACCAGCCTTGCGAGGGCATGCTTAACATGGGAGGGTCGCCCGGG
GACAAGCTGGTTTAGCCAGCAACCGAGCGTGTTGGTGCTCGACGACTTCA
AGTGCCACCACGACCAGAAGCTCCAAGAGAGCTTGAAGAAAAAGGTCAAC
ACGGACACCATCCTCATTCTGGGGGCTTATCAGTGGTTAACCAGCCTTGC
GAGGGCATGCTTAACA
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