mRNA_H-paniculata_contig21030.5493.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21030.5493.1
Unique NamemRNA_H-paniculata_contig21030.5493.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: D8LDM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM7_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 3.140e-47
Identity = 73/107 (68.22%), Postives = 91/107 (85.05%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            RDH++LYD  +WE  GEF+ +T+D  +V FSPDG T+C+QDTSL+YRV+FY+L G+L+ RLE YS+ALG +SMAWSPDGTLL+VGSYDQCARL+SPV WK  AVLRH
Sbjct:  162 RDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVMFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSVGSYDQCARLVSPVTWKAVAVLRH 268          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: A0A6H5KUS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS3_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.470e-45
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            RDH++LYD  +WE  GEF+ +T+D  +V FSPDG T+C+QDTSLEYRV+FY+L G+L+ RLE YS ALG +SMAWSP GTLL+VGSYDQCARL+SPV WK  AVLRH
Sbjct:  170 RDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLEYRVMFYSLAGKLVGRLEAYSRALGVKSMAWSPAGTLLSVGSYDQCARLVSPVTWKAVAVLRH 276          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: D8R9P9_SELML (ANAPC4_WD40 domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9P9_SELML)

HSP 1 Score: 111 bits (277), Expect = 1.550e-26
Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            +D+V L  + +WE  G F+ DT+D  ++++SP+ +TI V D+SLEY+VL Y+  G+ L + + Y NALG R++AWSP G  L VGSYDQ AR+++ + WKP A   H
Sbjct:  156 KDYVHLLASNSWEGMGTFAVDTVDLADLEWSPNDNTIAVWDSSLEYKVLVYSPDGRCLFKYQAYENALGVRTVAWSPCGEFLGVGSYDQIARVLNHLTWKPVAEFTH 262          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: A0A2D4BQL4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQL4_PYTIN)

HSP 1 Score: 109 bits (272), Expect = 9.990e-26
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            +D + +Y   +W+    F  ++ D   VQ+SPD STI V+D+ +EYRVL Y   G LLA+ + Y NALG ++MAWS  G  LA+GSYD  AR++S +NWKP A   H
Sbjct:  175 KDFLGIYGCESWDLVTHFQLESYDCVEVQWSPDNSTIAVRDSHIEYRVLVYASNGSLLAKYQAYENALGLKTMAWSSSGQFLALGSYDDHARVLSHLNWKPVADFDH 281          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: A0A067CYV4_SAPPC (ANAPC4_WD40 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYV4_SAPPC)

HSP 1 Score: 108 bits (269), Expect = 1.890e-25
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            +D + +YD  +WE    F   + D   VQ++ DG  ICV+DT LEYR+LFY   G LL   E Y +ALG +S++WSP G  LAVGSYD+  R++S +++KP A L H
Sbjct:  164 KDMLGIYDVASWEMVSHFDVASYDLVEVQWTTDGRAICVRDTFLEYRLLFYAPDGALLQCYEAYQHALGVKSLSWSPTGQFLAVGSYDERVRILSHMHYKPVAELEH 270          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: A0A218X4K3_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218X4K3_PUNGR)

HSP 1 Score: 105 bits (262), Expect = 5.870e-25
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 MCVR---RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            +C R   +D++ L    NWE  G F+ DTLD  ++++SPD S I + D+ LEY+VL Y+  G+ L + + Y + LG +S+AWSP G  LAVGSYDQ  R+++ + WK  A   H
Sbjct:  149 ICTRHDCKDYINLLSCHNWEIMGSFAVDTLDLADIEWSPDDSAIVIWDSPLEYKVLTYSPDGRCLFKYQAYESGLGVKSVAWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFVH 262          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: A0A1V9Y9N4_9STRA (WD repeat-containing protein 8-like (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9N4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.510e-25
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            +D + +Y+   WE    F T + D   + ++ D   ICV+DT LEYRVLFY   G LL   E Y +ALG +SM+WSP G  +A+GSYD+  RL+S ++WKP A L H
Sbjct: 1115 KDMLGIYNTETWELVTHFDTGSYDLVEITWTSDARAICVRDTYLEYRVLFYAPDGTLLQSYEAYEHALGIKSMSWSPSGQFVAIGSYDERVRLLSNLHWKPVAELEH 1221          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: A0A833SSC7_PHYIN (Putative tricorn protease domain 2-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A833SSC7_PHYIN)

HSP 1 Score: 106 bits (264), Expect = 1.090e-24
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            +D + +Y   +WE    FS D+ D   + +SPD + I V+DT LE+RVL Y+  G LLA+ + Y NALG ++M WSP G  LA+GSYD+  R++S +NWK  A   H
Sbjct:  154 KDFIGVYSCESWELTTHFSIDSYDCVEISWSPDDAAIAVRDTHLEFRVLLYSPDGTLLAKYQAYENALGLKTMTWSPSGQFLALGSYDEHLRVLSHINWKLIADFDH 260          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: A0A4P9XK19_9FUNG (Uncharacterized protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XK19_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 1.730e-24
Identity = 52/107 (48.60%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   13 RDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            +DHV +Y+   W     F  +TLD   +Q+SP+G  I V DT LEY+VL YT  G L      YSN LG R+MAWSP    LAVGSYDQ ARL++   W P   L H
Sbjct:  158 KDHVGIYNCDTWSLVHTFPVETLDLEGLQWSPNGRYIAVWDTMLEYKVLVYTPDGHLQKSYSAYSNGLGVRTMAWSPSSQFLAVGSYDQKARLLNHFTWTPLIELEH 264          
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Match: M4BQG9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQG9_HYAAE)

HSP 1 Score: 100 bits (250), Expect = 2.760e-24
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   25 RLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEYRVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISPVNWKPAAVLRH 333
            ++    +WE    FS ++ D   + ++P+ +TI VQDT LE+RVL Y+  G L A+ + Y NALG ++MAWSP G  LA+GSYD+  R++S ++WKP A   H
Sbjct:   18 KIRHCESWELTAHFSIESYDCVEIAWAPEDATIAVQDTHLEFRVLLYSPDGTLRAKFQAYENALGLKTMAWSPSGQFLALGSYDEHLRVLSHLHWKPVADFDH 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21030.5493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM7_ECTSI3.140e-4768.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUS3_9PHAE1.470e-4568.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8R9P9_SELML1.550e-2646.73ANAPC4_WD40 domain-containing protein n=2 Tax=Sela... [more]
A0A2D4BQL4_PYTIN9.990e-2646.73Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067CYV4_SAPPC1.890e-2546.73ANAPC4_WD40 domain-containing protein n=2 Tax=Sapr... [more]
A0A218X4K3_PUNGR5.870e-2542.98Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A1V9Y9N4_9STRA8.510e-2545.79WD repeat-containing protein 8-like (Fragment) n=1... [more]
A0A833SSC7_PHYIN1.090e-2444.86Putative tricorn protease domain 2-containing prot... [more]
A0A4P9XK19_9FUNG1.730e-2448.60Uncharacterized protein n=1 Tax=Thamnocephalis sph... [more]
M4BQG9_HYAAE2.760e-2443.69Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21030contigH-paniculata_contig21030:3091..3714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.6e-39
Seed eggNOG ortholog2880.D8LDM7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of non-motile cilium assembly
EggNOG OGsKOG4497@1,KOG4497@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-19_001240.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.6708245-CDS-H-paniculata_contig21030:3090..32771622929556.6708245-CDS-H-paniculata_contig21030:3090..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21030 3091..3277 -
1691480912.4671366-CDS-H-paniculata_contig21030:3090..32771691480912.4671366-CDS-H-paniculata_contig21030:3090..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21030 3091..3277 -
1622929556.6840227-CDS-H-paniculata_contig21030:3568..37141622929556.6840227-CDS-H-paniculata_contig21030:3568..3714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21030 3569..3714 -
1691480912.4784648-CDS-H-paniculata_contig21030:3568..37141691480912.4784648-CDS-H-paniculata_contig21030:3568..3714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21030 3569..3714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21030.5493.1prot_H-paniculata_contig21030.5493.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21030 3091..3714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21030.5493.1

>prot_H-paniculata_contig21030.5493.1 ID=prot_H-paniculata_contig21030.5493.1|Name=mRNA_H-paniculata_contig21030.5493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MCVRRDHVRLYDATNWEPKGEFSTDTLDSFNVQFSPDGSTICVQDTSLEY
RVLFYTLTGQLLARLEPYSNALGARSMAWSPDGTLLAVGSYDQCARLISP
VNWKPAAVLRH
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mRNA from alignment at H-paniculata_contig21030:3091..3714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21030.5493.1 ID=mRNA_H-paniculata_contig21030.5493.1|Name=mRNA_H-paniculata_contig21030.5493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=624bp|location=Sequence derived from alignment at H-paniculata_contig21030:3091..3714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGTGCGCAGGGATCATGTGCGACTGTATGACGCGACGAATTGGGA GCCGAAGGGCGAGTTCTCCACGGACACTTTAGATTCATTCAATGTACAGT TTTCTCCGGATGGCTCTACAATCTGTGTCCAAGACACCTCACTGGAGTAA GTGTGTACGGATCTAGTTACTTGGGCAACCCGTTTGCGGCGTGTTACTTG GTAGTAGTAGTAGTTGTGCTATCTGTCGTAGTTGTTGCTGTGGTTTTTTC TGTGATTGGGATTGTAGTGGTGGTGGTGGTGGTGGTGGTTGTTGATGTTG CTGTTGTGTTACCACCAGATGTACACGCATTGAGTACCCCCCAAGGCGCC CATCCTCTTGAGGGTACGTGGACAATAATCTAACAGGGAACGCGTTGAAA TAATGGTTATCCGCCATCCCCCTCCCTGTTCCGGCAGGTACCGAGTACTG TTTTACACTCTAACTGGGCAGTTGCTGGCGCGGCTGGAGCCATACTCGAA TGCCCTCGGCGCGCGATCGATGGCGTGGTCGCCAGACGGTACCCTCCTTG CCGTTGGCAGCTACGACCAATGCGCGCGGCTGATATCTCCGGTGAACTGG AAGCCGGCAGCGGTGCTGCGTCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig21030:3091..3714-

>mRNA_H-paniculata_contig21030.5493.1 ID=mRNA_H-paniculata_contig21030.5493.1|Name=mRNA_H-paniculata_contig21030.5493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig21030:3091..3714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGTGCGCAGGGATCATGTGCGACTGTATGACGCGACGAATTGGGA
GCCGAAGGGCGAGTTCTCCACGGACACTTTAGATTCATTCAATGTACAGT
TTTCTCCGGATGGCTCTACAATCTGTGTCCAAGACACCTCACTGGAATGT
GTGTGCGCAGGGATCATGTGCGACTGTATGACGCGACGAATTGGGAGCCG
AAGGGCGAGTTCTCCACGGACACTTTAGATTCATTCAATGTACAGTTTTC
TCCGGATGGCTCTACAATCTGTGTCCAAGACACCTCACTGGAGTACCGAG
TACTGTTTTACACTCTAACTGGGCAGTTGCTGGCGCGGCTGGAGCCATAC
TCGAATGCCCTCGGCGCGCGATCGATGGCGTGGTCGCCAGACGGTACCCT
CCTTGCCGTTGGCAGCTACGACCAATGCGCGCGGCTGATATCTCCGGTGA
ACTGGAAGCCGGCAGCGGTGCTGCGTCATGTACCGAGTACTGTTTTACAC
TCTAACTGGGCAGTTGCTGGCGCGGCTGGAGCCATACTCGAATGCCCTCG
GCGCGCGATCGATGGCGTGGTCGCCAGACGGTACCCTCCTTGCCGTTGGC
AGCTACGACCAATGCGCGCGGCTGATATCTCCGGTGAACTGGAAGCCGGC
AGCGGTGCTGCGTCAT
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