mRNA_H-paniculata_contig20863.5429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20863.5429.1
Unique NamemRNA_H-paniculata_contig20863.5429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20863.5429.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 8.490e-18
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 IGFLVMLVWNGIIDVVEVNFIMVGYAHIKIDQIFSRFAVGVRGKNIFARSQQSEILKDSYKHLPVHCTTLRN 216
            +GF  +LV   +I VVE+NF+MVG+ H+KIDQIFSRF+ G++GKNIF R+Q +E+L+ SY  +PV C+TL N
Sbjct:   34 LGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGN 105
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BLAST of mRNA_H-paniculata_contig20863.5429.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-15
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 IGFLVMLVWNGIIDVVEVNFIMVGYAHIKIDQIFSRFAVGVRGKNIFARSQQSEILKDSYKHLPVHCTTLRN 216
            +G+  +LV   ++ VVE++F+MVG+ H KIDQ+FSRF+ G++GKNIF R+  +E L+ SY  +PV C+TLRN
Sbjct:  237 LGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRN 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20863.5429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE8.490e-1856.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE1.270e-1551.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20863contigH-paniculata_contig20863:951..1687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20863.5429.1prot_H-paniculata_contig20863.5429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20863 951..1672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.7946358-CDS-H-paniculata_contig20863:950..10591622929546.7946358-CDS-H-paniculata_contig20863:950..1059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20863 951..1059 -
1691480908.2186582-CDS-H-paniculata_contig20863:950..10591691480908.2186582-CDS-H-paniculata_contig20863:950..1059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20863 951..1059 -
1622929546.8085501-CDS-H-paniculata_contig20863:1580..16721622929546.8085501-CDS-H-paniculata_contig20863:1580..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20863 1581..1672 -
1691480908.227815-CDS-H-paniculata_contig20863:1580..16721691480908.227815-CDS-H-paniculata_contig20863:1580..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20863 1581..1672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.8189092-UTR-H-paniculata_contig20863:1672..16871622929546.8189092-UTR-H-paniculata_contig20863:1672..1687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20863 1673..1687 -
1691480908.2363973-UTR-H-paniculata_contig20863:1672..16871691480908.2363973-UTR-H-paniculata_contig20863:1672..1687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20863 1673..1687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20863.5429.1

>prot_H-paniculata_contig20863.5429.1 ID=prot_H-paniculata_contig20863.5429.1|Name=mRNA_H-paniculata_contig20863.5429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLVWNGIIDVVEVNFIMVGYAHIKIDQIFSRFAVGVRGKNIFARSQQSEI
LKDSYKHLPVHCTTLRN
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mRNA from alignment at H-paniculata_contig20863:951..1687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20863.5429.1 ID=mRNA_H-paniculata_contig20863.5429.1|Name=mRNA_H-paniculata_contig20863.5429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at H-paniculata_contig20863:951..1687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGTTTCCTTGTAATGCTCGTGTGGAACGGAATCATTGATGTCGTGGA
GGTCAACTTCATTATGGTTGGGTACGCCCACATCAAAATTGACCAGATCT
TCTCCAGGTAACCTCACATCATGCTCGTATTAGTGATGTCTGTTTTGTGC
AGACCAGTTCTAGAATAACAGATACCGTAATATGTATAATAACAGTGACG
TTGTACTTGACACTGACAACGTCCCCAATTGGTATTGAATATGCCAAGTT
CCATTGACATGCATTGAAGTTAAACTGCACGCTGTAGCAGTACTCCAATA
TTTGTGCGTTTCGAATGCATTGTTACGTGGTGCTAACGACGTACTTGATG
TATAACCTCATTTTTGAGGCATGCTCGTAGGTCTACGGTTATTCTCTTCT
GTAGCTCACCGTACAAACAGCTTAAATTCTCAAATTATGCAATAATATAT
TTTTAGTTAATGCCATCGACATGATTGACACGATTGACTGTGCGCCAAAT
GTTTTATACAAGCGAGAGCTAGATCATCTGTGGCACGACAACTTGTGTAC
AACTGCTTTTTGACATTATTGCCATAATAATGGCTTTGTTTGCACTTCTC
CATCAATATATCGTTCGCTGACGCGAAGGTTTGCTGTAGGTGTGCGTGGC
AAGAACATCTTCGCCAGAAGTCAACAATCAGAGATCTTGAAGGACTCCTA
CAAACACTTGCCTGTCCACTGTACGACACTGAGGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20863:951..1687-

>mRNA_H-paniculata_contig20863.5429.1 ID=mRNA_H-paniculata_contig20863.5429.1|Name=mRNA_H-paniculata_contig20863.5429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig20863:951..1687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGTGTGGAACGGAATCATTGATGTCGTGGAGGTCAACTTCATTAT
GGTTGGGTACGCCCACATCAAAATTGACCAGATCTTCTCCAGATGCTCGT
GTGGAACGGAATCATTGATGTCGTGGAGGTCAACTTCATTATGGTTGGGT
ACGCCCACATCAAAATTGACCAGATCTTCTCCAGGTTTGCTGTAGGTGTG
CGTGGCAAGAACATCTTCGCCAGAAGTCAACAATCAGAGATCTTGAAGGA
CTCCTACAAACACTTGCCTGTCCACTGTACGACACTGAGGAACGTTTGCT
GTAGGTGTGCGTGGCAAGAACATCTTCGCCAGAAGTCAACAATCAGAGAT
CTTGAAGGACTCCTACAAACACTTGCCTGTCCACTGTACGACACTGAGGA
AC
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