mRNA_H-paniculata_contig20814.5411.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20814.5411.1
Unique NamemRNA_H-paniculata_contig20814.5411.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A2K3NI74_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NI74_TRIPR)

HSP 1 Score: 111 bits (278), Expect = 3.950e-24
Identity = 82/289 (28.37%), Postives = 138/289 (47.75%), Query Frame = 1
Query:    1 IQCWNCGKHGHRQWECREKPKGND-SAANDMAQSSKLHV-----------HWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHI-IFCNVFYVPEASDSILSVERVKYSSRMILGDEVEI---DAAKRAIGKQVKVNRLFSNDFTTLKNKEK----KQQVDTKLLHERLGHVRDVPTIARQQGI------RLSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
            ++C  CG+ GH +  C+ + +  +   A D +Q  +L              W+IDSGCT H +T  R+LF+   + V S +       ++V+G+G V       EG   + +  +V +VPE + ++LSV ++      +  ++      D+  R + K     + F+ DF    NKE+    K+   T L H+RLGH      I  ++        +L     +C AC  GK  + P +     R T+ L+LVHTD+ GP+   S  G ++ I F+DDYSRM  ++ ++
Sbjct:  280 VRCHKCGRLGHVEKICKSQQQQQEVKVAEDESQDEQLFTASCFASNYSTESWLIDSGCTNH-MTYDRELFRELDENVLSKVKIGNGAYIEVKGKGTV-----AIEGHTGLKLISDVLFVPEINQNLLSVPQLLEKGYKVFFEDKNCMIKDSEGREVFKIQMKGKSFALDFM---NKEQAAMHKEVSSTMLWHKRLGHFHHAALIFMKKNNLVNDLPKLEVMPPECIACQYGKQKRLPFQQNNTWRATQKLQLVHTDVGGPMKTPSLNGSKYYIAFIDDYSRMCWIYFMK 559          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A151QUV8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QUV8_CAJCA)

HSP 1 Score: 111 bits (277), Expect = 5.710e-24
Identity = 79/287 (27.53%), Postives = 140/287 (48.78%), Query Frame = 1
Query:    1 IQCWNCGKHGHRQWECRE-KPKGNDSAANDMAQSSKLHV-----------HWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHI-IFCNVFYVPEASDSILSVERVKYSSRMILGDEVEI---DAAKRAIGKQVKVNRLFSNDFTTLKNKEKKQQVDTKLL-HERLGHVRDVPTIARQQGIRLSGKLGD-------CSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
            ++C  CG+ GH +  C+  + +G    A D +Q  +L              W+IDSGCT H ++  R+LF+   +   S +       + V+G+G V       EG   + +  +V YVPE + ++LSV ++      +L ++      D+A + + K     + F+ DF + ++    ++V   +L H+RLGH      I  ++   + G L D       C AC  GK ++ P    +  R  ++L+L+HTD+ GP+   S  G R+ IIF+DD +RM  ++ ++
Sbjct:  233 VKCHKCGQLGHMEKICKSHQQQGEVKVAEDQSQEEQLFAVTCFAANSSTESWLIDSGCTNH-MSYDRELFKELDKTALSKVRVGNGAYIAVKGKGTV-----AIEGQTGLKLISDVLYVPEINQNLLSVPQLLEKGYKVLFEDKNCIIKDSAGKEVFKVRMKGKSFALDFMSEEHAAVHKEVSNTILWHKRLGHFHHSALIFMKKNNMVRG-LSDIEEESPTCIACQYGKQTRLPFPQNKTWRAIQNLQLIHTDVGGPMSTPSLNGSRYYIIFIDDMTRMCWIYFMK 512          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT)

HSP 1 Score: 109 bits (273), Expect = 1.710e-23
Identity = 84/302 (27.81%), Postives = 139/302 (46.03%), Query Frame = 1
Query:    7 CWNCGKHGHRQWECRE-------------------KPKGNDSAANDMA-------QSSKLH-VHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGEL-DVEGQGDVE-GLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEI-DAAKRAIGKQVKVNRLFSNDFTTLKNKEKK--QQVDTKLLHERLGHVRDVPTIARQQGIRLSG-------KLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLR 786
            C+ CG  GH +  C +                   K + +DS +   A        ++KL   HW+IDSG + H +T ++ +  N++Q         G G +    G G+V   ++++   +   + CNV YVP+ + ++ SV        ++   GD+  I DA+ R  G     N+L+  D   + N       Q  + L H+RLGHV +    +  +   + G       KL  C AC  GK  ++P     E R++  L+LVH+D+ GP+  +SFGG R+ + F DDYSR   V+ ++
Sbjct:  204 CFKCGTVGHIRRNCPQEKARYTKPVYKSRHGAKVGKTQNSDSESESSACVFTVSEGNAKLSDCHWLIDSGASSH-MTKEKSVLVNYQQFGEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASGRLRGMGSLANKLYKLDCEDVSNGHATLASQESSDLWHQRLGHVHEQRLNSCIKNNIVKGICCENVDKLSFCEACLAGKMHRKPFLAREEIRSSHKLQLVHSDVCGPMQTESFGGARYFVTFTDDYSRCCAVYFMK 504          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: Q9ZQE9_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQE9_ARATH)

HSP 1 Score: 107 bits (267), Expect = 1.220e-22
Identity = 82/289 (28.37%), Postives = 133/289 (46.02%), Query Frame = 1
Query:    1 IQCWNCGKHGHRQWECREKPKGND----------------SAANDMAQSSKLHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDEVEI---DAAKRAIGKQVKVNRLFSNDFTTLKNKEKKQQVDTK-LLHERLGHVRDVPTIARQQGIRLSG------KLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLR 786
            I+C+ CGK GH   ECR K K                   SA+ + + + +  V W++DSGCT H +T +   F N  + +  PI       +   G+GD+   + T  G    I  NVF VP    ++LSV ++  S   +   +      DA  + I      ++ F    ++++ +     V T+   H+RLGHV +      Q    ++G          C AC  GK S++      + +T E LE+VHTD+ GP+  +S  G R+ ++F+DDY+ M  V+ L+
Sbjct:  272 IKCYKCGKIGHYANECRSKNKERAHVTLEEEDVNEDHMLFSASEEESTTLREDV-WLVDSGCTNH-MTKEERYFSNINKSIKVPIRVRNGDIVMTAGKGDIT--VMTRHGKR--IIKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEIMNIEMTDKSFKIKLSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLK 554          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI)

HSP 1 Score: 107 bits (266), Expect = 1.510e-22
Identity = 76/289 (26.30%), Postives = 143/289 (49.48%), Query Frame = 1
Query:    4 QCWNCGKHGHRQWECREKPKGN-----------------DSAANDMAQSSKL-HVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDE----VEIDAAKRAIGKQVKVNRLFSNDFTTLKNKEKKQQVDTKLLHERLGHVRDVPTIARQQG----IRL-SGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
            +C++C K+GH    CR K K N                 + A + +  S+K+ +  W +DS C+  H+T ++   QN +   +  I  A K  + ++  G+V+  + T  G   ++  +V Y PE++ ++LSV ++      ++       +  D   R I    + N ++  D    K     +  + +L H+RLGH+ +   IA  +     I++ + ++  C +C KGK  + P  ++ + R+ E L++VH+D+ GP++K S GG R+ + F+DDYS+   V  L+
Sbjct:   66 RCFSCNKYGHYAIVCRSKSKQNSKGNLQKAEEKQNSPKTEKAFDALLSSTKISNRQWYVDS-CSSAHITNEKVELQNNKDCRNMSITVANKNMISIKAIGNVKIPVTTESGVDEVVVKDVKYAPESAANLLSVSKIVNKGFFVIFTPRVSYISDDKGTR-IATMSQENGIYRLDTPREKVYYAAETPNAELWHKRLGHLNNKNVIALSKNPATEIKIRNAEIPTCVSCIKGKQHRYPF-SHSKTRSREILQMVHSDVCGPMEKTSIGGSRYFLTFIDDYSKKTFVFFLK 351          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5A7UI36_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UI36_CUCME)

HSP 1 Score: 107 bits (266), Expect = 1.540e-22
Identity = 83/293 (28.33%), Postives = 140/293 (47.78%), Query Frame = 1
Query:    1 IQCWNCGKHGHRQWECREKPKGNDSAANDMAQSSK-----------------LHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDEVEIDAAKRAIG---KQVKV--NRLFSNDFT--TLKNKEKKQQVDTKLLHERLGHV--RDVPTIARQQGIR----LSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDKSF-GGCRFAIIFVDDYSRMRKVHTLR 786
            IQC+NCGK+GH Q +C     G  +A  +M +  K                 +   W +DSGC+ H +T  R +F    +   S + T     L V+GQGD+  L+ T +G   +   NVFYVP    ++LS+ ++      +   E +I A K  +G    +VK+  N++F  +FT   +       +  + L H R GH+  + +  + +   +R    ++ +   C  C   K  +    T +  R ++ LEL+HTD+ GP+  +  GG R+ I F+DD+SR   ++ L+
Sbjct:  283 IQCFNCGKYGHFQADCWALKNGVGNATMNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNH-MTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDI--LVKTKKGTKRVT--NVFYVPGLKHNLLSIGQLLQRGLKV-SFEGDICAIKDQVGVLIAKVKMTANKMFPLNFTYGQISCFSSILKDPSWLWHFRYGHLNFKSLSYLCKNHMVRGIQNINHETNICEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLK 569          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5N5G876_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G876_9ROSA)

HSP 1 Score: 106 bits (265), Expect = 2.250e-22
Identity = 82/294 (27.89%), Postives = 140/294 (47.62%), Query Frame = 1
Query:    1 IQCWNCGKHGHRQWECREKP---KGNDSAAND------MAQSSKLHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDE--VEIDAAKRAIGKQVKV--NRLFSNDFTTLKNKEKK----QQVD-TKLLHERLGH--------------VRDVPTIARQQGIRLSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTL 783
            ++C++C + GH QWEC +KP   K N +   +      + +  ++   W +DSGC+ H +  + DLF  F       +       L V+G+G V   I   +G +H+I   VFYVP+  +++LS+ +++     +L  +   +I   ++ +  + K+  NR+F+        +E+K    Q  D  +L H R GH              V+ +P IA  Q +        C  C  G+  + P     + R +E+L+LVH DI GP++  S    R+ I F+DD+SR   V+ L
Sbjct:  371 LECYHCHELGHFQWECPKKPREEKANYAETKEEMLLMALVEFKRMEHTWFLDSGCSNH-MCGRLDLFSEFDSSFKESVKLGNDSSLTVQGKGSVRMEI---DGRIHVI-TGVFYVPDLKNNLLSIGQLQEKGLTVLIQQGRCKIFHFEKGLIMETKMSTNRMFA--VVARSPEEQKCLSSQTTDQAQLWHHRYGHLSWNGLKVLQQKQMVKGLPQIAASQKV--------CEDCLVGRQQRDPFPKESQWRASETLQLVHADICGPINPTSNSNKRYLITFIDDFSRKTWVYFL 649          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A7D9F0C3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F0C3_PARCT)

HSP 1 Score: 105 bits (262), Expect = 4.620e-22
Identity = 82/302 (27.15%), Postives = 139/302 (46.03%), Query Frame = 1
Query:    7 CWNCGKHGHRQWECRE-------------------KPKGNDSAANDMA-------QSSKLH-VHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGEL-DVEGQGDVE-GLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEI-DAAKRAIGKQVKVNRLFSNDFTTLKNKEKK--QQVDTKLLHERLGHVRDVPTIARQQGIRLSG-------KLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLR 786
            C+ CG  GH +  C +                   K + +DS +   A        ++KL   HW+IDSG + H +T ++ +  N++Q         G G +    G G+V   ++++   +   + CNV YVP+ + ++ SV+       ++   GD+  I DA+ R  G     N+L+  D   + +       Q  + L H+RLGHV +    +  +   + G       KL  C AC  GK  ++P     E R++  L+LVH+D+ GP+  +SFGG  + + F DDYSR   V+ ++
Sbjct:   40 CFKCGTVGHIRRNCPQEKARYTKPVYKSRHGAKVGKTQNSDSESESGACVFTVSEGNAKLSDCHWLIDSGASSH-MTKEKSVLVNYQQFGEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVQAAVAKGNVVKFRGDKCWISDASGRLRGMGSLANKLYKLDCEDVSDGHATLASQESSDLWHQRLGHVHEQRLNSCIKNNIVKGICCENVDKLSFCEACLAGKMHRKPFLAREEIRSSHKLQLVHSDVCGPMQTESFGGASYFVTFTDDYSRCCAVYFMK 340          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR)

HSP 1 Score: 105 bits (261), Expect = 6.690e-22
Identity = 77/290 (26.55%), Postives = 145/290 (50.00%), Query Frame = 1
Query:    1 IQCWNCGKHGHRQWECREKPKGNDSAAND-------MAQSSK-------LHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEIDAAKRAI--GKQVKVNRLFSNDFTTLKNKEKKQQV---DTKLLHERLGHV--RDVPTIARQQGIR----LSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
            I+C+ C + GH Q+EC +  KG + A  D       MA+  K        + +W +DS C+ H +T  ++ F    + ++  +       L+V+G G ++   +   G + II   V++VP+ + +++S+ +++     I     E  +  A+R +    ++  NR+F           +  QV   +T++ H RL HV  + + T+ +++ +R    +SGK   C  C  GK +++ +      R+TE LEL+HTD+ GP+   S  G R+ ++F+DD +R   V+ L+
Sbjct:  258 IECYKCQQMGHYQFECPQWNKGVNYAEFDDTEELVLMAKEEKEDQETTECNGYWFLDSACSNH-MTGTKEWFTELDENINHSVKLGNGLRLNVQGIGSIK---FEVNGIIQII-TKVYFVPQLTSNLISIGQLQEKKVKITIENGECTVYHAQRGVIMKSEMSRNRMFIVHGVKKGEHTRCMQVTEDETQVWHRRLAHVNYKAIKTMQQKEMVRGLPEVSGKAMICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQ 542          
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5D3CBW3_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CBW3_CUCME)

HSP 1 Score: 103 bits (258), Expect = 1.810e-21
Identity = 82/292 (28.08%), Postives = 136/292 (46.58%), Query Frame = 1
Query:    1 IQCWNCGKHGHRQWECREKPKGNDSAANDMAQSSK-----------------LHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEI-DAAKRAIGK-QVKVNRLFSNDFT--TLKNKEKKQQVDTKLLHERLGHV--RDVPTIARQQGIR----LSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDKSF-GGCRFAIIFVDDYSRMRKVHTLR 786
            IQC+NCGK+GH Q  C     G  +   +M +  K                 +   W +DSGC+ H +T  R +F    +   S + T     L V+GQGD+  L+ T +G   +   NVFYVP    ++LS+ ++      +   GD   I D A   I K ++  N++F  +FT   +       +  + L H R GH+  + +  + +   +R    ++ +   C  C   K  +    T +  R ++ LEL+HTD+ GP+  +  GG R+ I F+DD+SR   ++ L+
Sbjct:  283 IQCFNCGKYGHFQANCWALKNGVGNTTMNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNH-MTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDI--LVKTKKGTKRVT--NVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQAGVLIAKVKMTANKMFPLNFTYGQISCFSSILKDPSWLWHFRYGHLNFKSLSYLCKNHMVRGIQNINHETNICEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLK 569          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3NI74_TRIPR3.950e-2428.37Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A151QUV8_CAJCA5.710e-2427.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7JQN7_PARCT1.710e-2327.81Retrovirus-related Pol poly from transposon TNT 1-... [more]
Q9ZQE9_ARATH1.220e-2228.37Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A0J7KG03_LASNI1.510e-2226.30Retrovirus-related pol polyprotein from transposon... [more]
A0A5A7UI36_CUCME1.540e-2228.33Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1... [more]
A0A5N5G876_9ROSA2.250e-2227.89Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
A0A7D9F0C3_PARCT4.620e-2227.15Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5N6M7D6_9ASTR6.690e-2226.55Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5D3CBW3_CUCME1.810e-2128.08Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20814contigH-paniculata_contig20814:2529..3526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score109.4
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog7070.TC009115-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons3
Model size789
Cds size789
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20814.5411.1prot_H-paniculata_contig20814.5411.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20814 2529..3526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.0480366-CDS-H-paniculata_contig20814:2528..29601622929545.0480366-CDS-H-paniculata_contig20814:2528..2960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 2529..2960 -
1691480907.412713-CDS-H-paniculata_contig20814:2528..29601691480907.412713-CDS-H-paniculata_contig20814:2528..2960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 2529..2960 -
1622929545.0615263-CDS-H-paniculata_contig20814:3053..33141622929545.0615263-CDS-H-paniculata_contig20814:3053..3314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 3054..3314 -
1691480907.4237442-CDS-H-paniculata_contig20814:3053..33141691480907.4237442-CDS-H-paniculata_contig20814:3053..3314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 3054..3314 -
1622929545.083458-CDS-H-paniculata_contig20814:3430..35261622929545.083458-CDS-H-paniculata_contig20814:3430..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 3431..3526 -
1691480907.4330823-CDS-H-paniculata_contig20814:3430..35261691480907.4330823-CDS-H-paniculata_contig20814:3430..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 3431..3526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20814.5411.1

>prot_H-paniculata_contig20814.5411.1 ID=prot_H-paniculata_contig20814.5411.1|Name=mRNA_H-paniculata_contig20814.5411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
IQCWNCGKHGHRQWECREKPKGNDSAANDMAQSSKLHVHWIIDSGCTGHH
LTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIF
CNVFYVPEASDSILSVERVKYSSRMILGDEVEIDAAKRAIGKQVKVNRLF
SNDFTTLKNKEKKQQVDTKLLHERLGHVRDVPTIARQQGIRLSGKLGDCS
ACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDKSFGGCRFAIIFVD
DYSRMRKVHTLR*
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mRNA from alignment at H-paniculata_contig20814:2529..3526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20814.5411.1 ID=mRNA_H-paniculata_contig20814.5411.1|Name=mRNA_H-paniculata_contig20814.5411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=998bp|location=Sequence derived from alignment at H-paniculata_contig20814:2529..3526- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCAATGCTGGAATTGCGGCAAGCACGGACATCGGCAGTGGGAGTGCCG TGAGAAGCCCAAGGGAAACGACTCGGCGGCAAACGACATGGCACAAGTGA ACACGCGGGCTACGTAGAAGAGCATAATGTAGCCTTGCACCCAGTACCCC AACATCACATAATGCCCCGATGGTTGCTTGGTCCCGTTGCCTGTGCGATG CGATGGATGGAGTCATCTAAATTACACGTACACTGGATCATTGATTCGGG CTGCACCGGGCATCACCTGACCCCGCAACGCGACCTCTTCCAAAACTTTC GCCAGGTCGTACATAGTCCCATTGCCACAGCGGGCAAGGGGGAATTGGAT GTAGAGGGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAGC CATGCACATCATCTTCTGCAATGTATTTTATGTACCCGAAGCATCAGACA GTATTTTATCGGTGGAGCGGGTGGTGAGCCAAGGGATAAAGGCGTATTTT GGTTCGGAACGGAGACGGTTGTATTACAATGGGATCACGATTCCGTTCGA ACACACATCGCGCAAGAAGTATTCATCGCGTATGATATTGGGGGACGAAG TAGAGATAGACGCCGCAAAGCGGGCCATCGGAAAACAAGTGAAGGTTAAT CGATTATTCAGCAACGACTTTACTACACTGAAGAACAAAGAGAAGAAGCA ACAGGTGGACACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACG TTCCCACAATCGCGCGGCAACAAGGCATAAGGTTAAGCGGGAAGCTCGGT GATTGCTCGGCGTGTGGGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAAAC GTATCGAGAAGAGCGGACGACCGAGTCGTTGGAGCTGGTGCACACCGACA TAGCGGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATC TTCGTCGACGACTACAGCAGAATGCGCAAAGTCCATACTTTGCGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20814:2529..3526-

>mRNA_H-paniculata_contig20814.5411.1 ID=mRNA_H-paniculata_contig20814.5411.1|Name=mRNA_H-paniculata_contig20814.5411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig20814:2529..3526- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCAATGCTGGAATTGCGGCAAGCACGGACATCGGCAGTGGGAGTGCCG
TGAGAAGCCCAAGGGAAACGACTCGGCGGCAAACGACATGGCACAAATCC
AATGCTGGAATTGCGGCAAGCACGGACATCGGCAGTGGGAGTGCCGTGAG
AAGCCCAAGGGAAACGACTCGGCGGCAAACGACATGGCACAATCATCTAA
ATTACACGTACACTGGATCATTGATTCGGGCTGCACCGGGCATCACCTGA
CCCCGCAACGCGACCTCTTCCAAAACTTTCGCCAGGTCGTACATAGTCCC
ATTGCCACAGCGGGCAAGGGGGAATTGGATGTAGAGGGGCAAGGAGACGT
GGAAGGTTTAATTTGGACTGCGGAAGGAGCCATGCACATCATCTTCTGCA
ATGTATTTTATGTACCCGAAGCATCAGACAGTATTTTATCGGTGGAGCGG
GTGTCATCTAAATTACACGTACACTGGATCATTGATTCGGGCTGCACCGG
GCATCACCTGACCCCGCAACGCGACCTCTTCCAAAACTTTCGCCAGGTCG
TACATAGTCCCATTGCCACAGCGGGCAAGGGGGAATTGGATGTAGAGGGG
CAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAGCCATGCACAT
CATCTTCTGCAATGTATTTTATGTACCCGAAGCATCAGACAGTATTTTAT
CGGTGGAGCGGGTGAAGTATTCATCGCGTATGATATTGGGGGACGAAGTA
GAGATAGACGCCGCAAAGCGGGCCATCGGAAAACAAGTGAAGGTTAATCG
ATTATTCAGCAACGACTTTACTACACTGAAGAACAAAGAGAAGAAGCAAC
AGGTGGACACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACGTT
CCCACAATCGCGCGGCAACAAGGCATAAGGTTAAGCGGGAAGCTCGGTGA
TTGCTCGGCGTGTGGGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAAACGT
ATCGAGAAGAGCGGACGACCGAGTCGTTGGAGCTGGTGCACACCGACATA
GCGGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTT
CGTCGACGACTACAGCAGAATGCGCAAAGTCCATACTTTGCGATAAAAGT
ATTCATCGCGTATGATATTGGGGGACGAAGTAGAGATAGACGCCGCAAAG
CGGGCCATCGGAAAACAAGTGAAGGTTAATCGATTATTCAGCAACGACTT
TACTACACTGAAGAACAAAGAGAAGAAGCAACAGGTGGACACCAAGTTAC
TACACGAGCGACTTGGGCATGTTCGAGACGTTCCCACAATCGCGCGGCAA
CAAGGCATAAGGTTAAGCGGGAAGCTCGGTGATTGCTCGGCGTGTGGGAA
GGGGAAAGCGTCGAAGCAGCCCGTAAAAACGTATCGAGAAGAGCGGACGA
CCGAGTCGTTGGAGCTGGTGCACACCGACATAGCGGGACCGGTGGACAAG
TCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGACGACTACAGCAG
AATGCGCAAAGTCCATACTTTGCGATAA
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