mRNA_H-paniculata_contig20811.5410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20811.5410.1
Unique NamemRNA_H-paniculata_contig20811.5410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: D7G4U4_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U4_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.100e-9
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            ADVAHPCKPW +H KWS+LVTEEFF+Q
Sbjct:  655 ADVAHPCKPWEVHHKWSELVTEEFFKQ 681
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A3P7MCU7_DIBLA (PDEase domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7MCU7_DIBLA)

HSP 1 Score: 54.7 bits (130), Expect = 1.010e-7
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQV 84
            AD+AHPCK W +H+ WS++++EEFFRQV
Sbjct:  214 ADIAHPCKEWKLHKHWSEILSEEFFRQV 241
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-7
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            ADV+H  KPW+IHR+WSD++TEEFF+Q
Sbjct: 1733 ADVSHATKPWDIHRRWSDMITEEFFKQ 1759
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A0R3WE75_TAEAS (Phosphodiesterase n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3WE75_TAEAS)

HSP 1 Score: 53.1 bits (126), Expect = 4.200e-7
Identity = 18/27 (66.67%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            AD+AHPCK W++HR+WS +++EEFFRQ
Sbjct:  510 ADIAHPCKRWDLHRQWSAMLSEEFFRQ 536
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A158QW76_MESCO (PDEase domain-containing protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A158QW76_MESCO)

HSP 1 Score: 53.1 bits (126), Expect = 4.230e-7
Identity = 18/27 (66.67%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            AD+AHPCK W +H++WS+L++EEFFRQ
Sbjct:  188 ADIAHPCKEWALHKEWSNLLSEEFFRQ 214
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A3P7CXY8_SCHSO (PDEase domain-containing protein n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A3P7CXY8_SCHSO)

HSP 1 Score: 52.8 bits (125), Expect = 4.910e-7
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            AD+AHPCK W +H+ WS++++EEFFRQ
Sbjct:   85 ADIAHPCKEWKLHKHWSEILSEEFFRQ 111
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A7M3QX07_SPIER (Phosphodiesterase n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QX07_SPIER)

HSP 1 Score: 52.8 bits (125), Expect = 5.720e-7
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            AD+AHPCK W +H+ WS++++EEFFRQ
Sbjct:  876 ADIAHPCKDWKLHKHWSEILSEEFFRQ 902
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A0V0J754_SCHSO (Phosphodiesterase n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0J754_SCHSO)

HSP 1 Score: 52.8 bits (125), Expect = 5.740e-7
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            AD+AHPCK W +H+ WS++++EEFFRQ
Sbjct:  536 ADIAHPCKEWKLHKHWSEILSEEFFRQ 562
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A068XVZ0_ECHMU (Phosphodiesterase n=3 Tax=Echinococcus TaxID=6209 RepID=A0A068XVZ0_ECHMU)

HSP 1 Score: 52.8 bits (125), Expect = 5.750e-7
Identity = 18/27 (66.67%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            AD+AHPCK W++HR+WS +++EEFFRQ
Sbjct:  486 ADIAHPCKRWDLHRQWSFMLSEEFFRQ 512
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BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Match: A0A654HGA6_9CEST (Phosphodiesterase n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HGA6_9CEST)

HSP 1 Score: 52.8 bits (125), Expect = 5.750e-7
Identity = 17/27 (62.96%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    1 ADVAHPCKPWNIHRKWSDLVTEEFFRQ 81
            AD+AHPCK W +H+ WS++++EEFFRQ
Sbjct:  449 ADIAHPCKDWKLHKHWSEILSEEFFRQ 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20811.5410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4U4_ECTSI1.100e-981.48Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A3P7MCU7_DIBLA1.010e-764.29PDEase domain-containing protein n=1 Tax=Dibothrio... [more]
A0A835Z5P1_9STRA1.630e-770.37Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A0R3WE75_TAEAS4.200e-766.67Phosphodiesterase n=1 Tax=Taenia asiatica TaxID=60... [more]
A0A158QW76_MESCO4.230e-766.67PDEase domain-containing protein n=2 Tax=Mesocesto... [more]
A0A3P7CXY8_SCHSO4.910e-762.96PDEase domain-containing protein n=2 Tax=Schistoce... [more]
A0A7M3QX07_SPIER5.720e-762.96Phosphodiesterase n=1 Tax=Spirometra erinaceieurop... [more]
A0A0V0J754_SCHSO5.740e-762.96Phosphodiesterase n=1 Tax=Schistocephalus solidus ... [more]
A0A068XVZ0_ECHMU5.750e-766.67Phosphodiesterase n=3 Tax=Echinococcus TaxID=6209 ... [more]
A0A654HGA6_9CEST5.750e-762.96Phosphodiesterase n=1 Tax=Sparganum proliferum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20811contigH-paniculata_contig20811:444..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D7G4U4
Preferred namepde-3
KEGG rclassRC00296
KEGG koko:K13293,ko:K13755,ko:K18437,ko:K19021
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04020,ko04022,ko04024,ko04740,ko04742,ko04924,ko04927,ko04934,ko05032,map00230,map04020,map04022,map04024,map04740,map04742,map04924,map04927,map04934,map05032
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000302,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007602,GO:0007610,GO:0007635,GO:0008150,GO:0008340,GO:0009268,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010259,GO:0010446,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010752,GO:0010754,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0046677,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:1901700,GO:1902531,GO:1902532
EggNOG free text desc.calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3688@1,KOG3688@2759
EC3.1.4.17,3.1.4.53
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.9920688-CDS-H-paniculata_contig20811:443..5481622929544.9920688-CDS-H-paniculata_contig20811:443..548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20811 444..548 +
1691480907.3969183-CDS-H-paniculata_contig20811:443..5481691480907.3969183-CDS-H-paniculata_contig20811:443..548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20811 444..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20811.5410.1prot_H-paniculata_contig20811.5410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20811 444..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20811.5410.1

>prot_H-paniculata_contig20811.5410.1 ID=prot_H-paniculata_contig20811.5410.1|Name=mRNA_H-paniculata_contig20811.5410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
ADVAHPCKPWNIHRKWSDLVTEEFFRQVRECGSQ*
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mRNA from alignment at H-paniculata_contig20811:444..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20811.5410.1 ID=mRNA_H-paniculata_contig20811.5410.1|Name=mRNA_H-paniculata_contig20811.5410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=105bp|location=Sequence derived from alignment at H-paniculata_contig20811:444..548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGATGTGGCTCACCCTTGCAAGCCGTGGAATATTCACCGGAAGTGGTC
CGACTTGGTAACCGAAGAATTCTTTCGGCAGGTGCGCGAATGTGGGTCAC
AGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20811:444..548+

>mRNA_H-paniculata_contig20811.5410.1 ID=mRNA_H-paniculata_contig20811.5410.1|Name=mRNA_H-paniculata_contig20811.5410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig20811:444..548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGATGTGGCTCACCCTTGCAAGCCGTGGAATATTCACCGGAAGTGGTC
CGACTTGGTAACCGAAGAATTCTTTCGGCAGGTGCGCGAATGTGGGTCAC
AGTAAGCCGATGTGGCTCACCCTTGCAAGCCGTGGAATATTCACCGGAAG
TGGTCCGACTTGGTAACCGAAGAATTCTTTCGGCAGGTGCGCGAATGTGG
GTCACAGTAA
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