mRNA_H-paniculata_contig20783.5401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20783.5401.1
Unique NamemRNA_H-paniculata_contig20783.5401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20783.5401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20783contigH-paniculata_contig20783:2962..3548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size348
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.178657-UTR-H-paniculata_contig20783:2961..32001622929543.178657-UTR-H-paniculata_contig20783:2961..3200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20783 2962..3200 +
1691480906.2830203-UTR-H-paniculata_contig20783:2961..32001691480906.2830203-UTR-H-paniculata_contig20783:2961..3200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20783 2962..3200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.2031178-CDS-H-paniculata_contig20783:3200..35481622929543.2031178-CDS-H-paniculata_contig20783:3200..3548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20783 3201..3548 +
1691480906.292203-CDS-H-paniculata_contig20783:3200..35481691480906.292203-CDS-H-paniculata_contig20783:3200..3548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20783 3201..3548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20783.5401.1prot_H-paniculata_contig20783.5401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20783 3201..3548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20783.5401.1

>prot_H-paniculata_contig20783.5401.1 ID=prot_H-paniculata_contig20783.5401.1|Name=mRNA_H-paniculata_contig20783.5401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MNEGLRGLLTDGSPDTTTRSPDIGTGDSEITCTKSFNSSSASAFNVRPQF
THSSFKHDFRLGSSSTHIRSTSRVALTDFLFSRISSTIYARSVRSITAVF
SITWWPFSTSPVRMK*
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mRNA from alignment at H-paniculata_contig20783:2962..3548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20783.5401.1 ID=mRNA_H-paniculata_contig20783.5401.1|Name=mRNA_H-paniculata_contig20783.5401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=587bp|location=Sequence derived from alignment at H-paniculata_contig20783:2962..3548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCTGAGCGACCACCTCGCCCGTCTCCGCGCTCGTAGTGGCAGAGCTCC
TTCGCCGCCACTACTGTAGAAGCGAGAAGTGGTCGGTGTCTAGCACCGGC
TCTTCCGTCAAGTATAGCACCAGATCCCGTCGAACATGCGCACTCCGTGG
GTGCCGCCGCACCCTCACCTCCCTGCATCCCACTGCTGACGGTACCCGCT
TCTGCTTTAGCAATGCGTTCCTAGCGCCTCTTCTCCAGCATGAACGAAGG
CTTGCGAGGCCTCTTGACTGACGGCTCCCCAGATACGACGACCCGCTCAC
CTGACATAGGGACTGGAGACAGCGAGATCACTTGCACCAAATCTTTCAAT
TCCTCTTCCGCGAGTGCCTTCAACGTTCGTCCGCAATTCACGCACTCTTC
TTTTAAGCACGACTTCCGCCTCGGGTCCAGCAGCACGCACATACGCTCTA
CCTCCAGGGTGGCTTTGACCGATTTCCTATTCTCCAGGATCTCCAGCACT
ATTTATGCGCGCAGCGTACGGTCAATCACCGCTGTCTTCTCCATCACATG
GTGGCCATTCTCAACCTCGCCTGTACGGATGAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20783:2962..3548+

>mRNA_H-paniculata_contig20783.5401.1 ID=mRNA_H-paniculata_contig20783.5401.1|Name=mRNA_H-paniculata_contig20783.5401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig20783:2962..3548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGAAGGCTTGCGAGGCCTCTTGACTGACGGCTCCCCAGATACGAC
GACCCGCTCACCTGACATAGGGACTGGAGACAGCGAGATCACTTGCACCA
AATCTTTCAATTCCTCTTCCGCGAGTGCCTTCAACGTTCGTCCGCAATTC
ACGCACTCTTCTTTTAAGCACGACTTCCGCCTCGGGTCCAGCAGCACGCA
CATACGCTCTACCTCCAGGGTGGCTTTGACCGATTTCCTATTCTCCAGGA
TCTCCAGCACTATTTATGCGCGCAGCGTACGGTCAATCACCGCTGTCTTC
TCCATCACATGGTGGCCATTCTCAACCTCGCCTGTACGGATGAAATGAAT
GAACGAAGGCTTGCGAGGCCTCTTGACTGACGGCTCCCCAGATACGACGA
CCCGCTCACCTGACATAGGGACTGGAGACAGCGAGATCACTTGCACCAAA
TCTTTCAATTCCTCTTCCGCGAGTGCCTTCAACGTTCGTCCGCAATTCAC
GCACTCTTCTTTTAAGCACGACTTCCGCCTCGGGTCCAGCAGCACGCACA
TACGCTCTACCTCCAGGGTGGCTTTGACCGATTTCCTATTCTCCAGGATC
TCCAGCACTATTTATGCGCGCAGCGTACGGTCAATCACCGCTGTCTTCTC
CATCACATGGTGGCCATTCTCAACCTCGCCTGTACGGATGAAATGA
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