mRNA_H-paniculata_contig20780.5400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20780.5400.1
Unique NamemRNA_H-paniculata_contig20780.5400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20780.5400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20780contigH-paniculata_contig20780:302..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.1083715-CDS-H-paniculata_contig20780:301..8441622929543.1083715-CDS-H-paniculata_contig20780:301..844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20780 302..844 +
1691480906.2731946-CDS-H-paniculata_contig20780:301..8441691480906.2731946-CDS-H-paniculata_contig20780:301..844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20780 302..844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20780.5400.1prot_H-paniculata_contig20780.5400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20780 302..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20780.5400.1

>prot_H-paniculata_contig20780.5400.1 ID=prot_H-paniculata_contig20780.5400.1|Name=mRNA_H-paniculata_contig20780.5400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
ATLTGSPRQQPARPFIAKITGSKQQFFLLVNGHPHRETSQLPANPGTNPT
SRQIIPANGQFTSPAHPASTAHGGPYVFVNPQRPTSLNGSSSYSGTGGCQ
GRCTPGGSETSSCCSGSSQRGEETGGTACYGGRASTTAGADEYAGAVPTR
RSKPHSSNTTTASPARSVRGSHTQTATQRPA
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mRNA from alignment at H-paniculata_contig20780:302..845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20780.5400.1 ID=mRNA_H-paniculata_contig20780.5400.1|Name=mRNA_H-paniculata_contig20780.5400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=544bp|location=Sequence derived from alignment at H-paniculata_contig20780:302..845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACACTCACAGGCAGCCCTCGTCAACAACCAGCCCGACCCTTTATCGC
CAAGATCACCGGGAGCAAGCAGCAATTCTTCCTCCTCGTCAATGGGCATC
CACACCGTGAAACCTCACAACTTCCGGCAAATCCTGGAACTAACCCCACC
TCCCGCCAGATTATTCCAGCCAACGGTCAATTCACCTCCCCTGCCCACCC
CGCATCCACTGCGCACGGCGGCCCCTACGTTTTCGTCAATCCACAACGAC
CGACCTCTCTCAACGGGTCGAGTAGCTACAGCGGAACAGGAGGCTGCCAA
GGCCGATGCACACCTGGAGGCAGCGAGACAAGCAGTTGTTGCAGCGGAAG
CAGCCAGCGCGGAGAAGAAACGGGCGGTACAGCTTGCTACGGAGGCAGAG
CATCAACAACAGCAGGAGCGGACGAGTATGCAGGCGCAGTACCAACCCGA
CGTAGCAAGCCTCACAGCTCAAATACAACAACTGCAAGCCCAGCAAGAAG
CGTCCGCGGCTCACATACACAAACTGCAACGCAACGTCCAGCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig20780:302..845+

>mRNA_H-paniculata_contig20780.5400.1 ID=mRNA_H-paniculata_contig20780.5400.1|Name=mRNA_H-paniculata_contig20780.5400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig20780:302..845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACACTCACAGGCAGCCCTCGTCAACAACCAGCCCGACCCTTTATCGC
CAAGATCACCGGGAGCAAGCAGCAATTCTTCCTCCTCGTCAATGGGCATC
CACACCGTGAAACCTCACAACTTCCGGCAAATCCTGGAACTAACCCCACC
TCCCGCCAGATTATTCCAGCCAACGGTCAATTCACCTCCCCTGCCCACCC
CGCATCCACTGCGCACGGCGGCCCCTACGTTTTCGTCAATCCACAACGAC
CGACCTCTCTCAACGGGTCGAGTAGCTACAGCGGAACAGGAGGCTGCCAA
GGCCGATGCACACCTGGAGGCAGCGAGACAAGCAGTTGTTGCAGCGGAAG
CAGCCAGCGCGGAGAAGAAACGGGCGGTACAGCTTGCTACGGAGGCAGAG
CATCAACAACAGCAGGAGCGGACGAGTATGCAGGCGCAGTACCAACCCGA
CGTAGCAAGCCTCACAGCTCAAATACAACAACTGCAAGCCCAGCAAGAAG
CGTCCGCGGCTCACATACACAAACTGCAACGCAACGTCCAGCGGCAACAC
TCACAGGCAGCCCTCGTCAACAACCAGCCCGACCCTTTATCGCCAAGATC
ACCGGGAGCAAGCAGCAATTCTTCCTCCTCGTCAATGGGCATCCACACCG
TGAAACCTCACAACTTCCGGCAAATCCTGGAACTAACCCCACCTCCCGCC
AGATTATTCCAGCCAACGGTCAATTCACCTCCCCTGCCCACCCCGCATCC
ACTGCGCACGGCGGCCCCTACGTTTTCGTCAATCCACAACGACCGACCTC
TCTCAACGGGTCGAGTAGCTACAGCGGAACAGGAGGCTGCCAAGGCCGAT
GCACACCTGGAGGCAGCGAGACAAGCAGTTGTTGCAGCGGAAGCAGCCAG
CGCGGAGAAGAAACGGGCGGTACAGCTTGCTACGGAGGCAGAGCATCAAC
AACAGCAGGAGCGGACGAGTATGCAGGCGCAGTACCAACCCGACGTAGCA
AGCCTCACAGCTCAAATACAACAACTGCAAGCCCAGCAAGAAGCGTCCGC
GGCTCACATACACAAACTGCAACGCAACGTCCAGCG
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