mRNA_H-paniculata_contig20732.5384.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20732.5384.1
Unique NamemRNA_H-paniculata_contig20732.5384.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: D7FTA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTA9_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 8.440e-15
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1
Query:   19 AAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            AA +PGDSFT EV+VGG+LNFLSIYN+LITGRVLLSWVPQ
Sbjct:   72 AAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQ 111          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A7S1GGH8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGH8_CYCTE)

HSP 1 Score: 59.7 bits (143), Expect = 5.810e-10
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   10 RGYAAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            R  A  IPG+  TE++ VGG  NFLSIYNI+IT R+LLSW PQ
Sbjct:   16 RILAMAIPGNGVTEQIFVGGFANFLSIYNIVITARILLSWFPQ 58          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A7S1VL38_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VL38_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.870e-10
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   19 AAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            A  IPGD   E+++VGG  NFL IYN ++TGR+LLSWVPQ
Sbjct:   73 AMAIPGDGIAEQIVVGGFANFLQIYNFILTGRILLSWVPQ 112          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A448ZNA5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNA5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.960e-10
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    7 GRGYAAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            G G A  IPG    E+V VGG  NFLSIYNI+IT RVLLSW PQ
Sbjct:   80 GNGAAMAIPGYGVAEQVFVGGFANFLSIYNIVITARVLLSWFPQ 123          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A7S2WJR2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJR2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.990e-9
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    7 GRGYAAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            G+  A VIPG+   E++ VGG LNFL++YN L+TGR++LSW PQ
Sbjct:   65 GQSMAMVIPGNGPLEQIFVGGGLNFLNVYNALLTGRIILSWFPQ 108          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A7S2YCS8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.630e-9
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   19 AAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            A  IPG    E+V VGG  NFLSIYN++ITGR+LLSW PQ
Sbjct:   74 AMAIPGYGIAEQVFVGGFANFLSIYNLIITGRILLSWFPQ 113          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: B7G073_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G073_PHATC)

HSP 1 Score: 58.2 bits (139), Expect = 7.340e-9
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   19 AAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            A  IPG    E+V VGG LNFLSIYNI+IT R+LLSW PQ
Sbjct:  104 AMAIPGYGVAEQVFVGGFLNFLSIYNIVITARILLSWFPQ 143          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A8J2X1G5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1G5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.460e-9
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   25 VIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            VIPGDS  E V++ G LNFL++YN LIT R+LLSW PQ
Sbjct:    2 VIPGDSAAEFVVISGTLNFLALYNALITARILLSWFPQ 39          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A1Z5KLA7_FISSO (YggT family protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLA7_FISSO)

HSP 1 Score: 57.4 bits (137), Expect = 9.460e-9
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   19 AAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            A  IPG+   E+V VGG  NFLSIYN++IT R+LLSW PQ
Sbjct:   62 AMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQ 101          
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Match: A0A7S0ZGD7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGD7_9RHOD)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-8
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   16 YAAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ 138
            YAAVIPGDS TE V VGG+  F  +Y+ L+ GRVLL+W P 
Sbjct:   34 YAAVIPGDSVTETVFVGGLSRFFDLYSNLLVGRVLLTWFPN 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20732.5384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTA9_ECTSI8.440e-1585.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1GGH8_CYCTE5.810e-1062.79Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1VL38_9STRA6.870e-1062.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A448ZNA5_9STRA7.960e-1065.91Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2WJR2_9STRA2.990e-956.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2YCS8_9STRA3.630e-965.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B7G073_PHATC7.340e-967.50Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A8J2X1G5_9STRA7.460e-965.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5KLA7_FISSO9.460e-962.50YggT family protein n=1 Tax=Fistulifera solaris Ta... [more]
A0A7S0ZGD7_9RHOD1.150e-860.98Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20732contigH-paniculata_contig20732:292..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D7FTA9
KEGG koko:K02221
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.YGGT family
EggNOG OGs2S4TK@2759,COG0762@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929541.2622159-CDS-H-paniculata_contig20732:291..4291622929541.2622159-CDS-H-paniculata_contig20732:291..429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20732 292..429 -
1691480905.4419081-CDS-H-paniculata_contig20732:291..4291691480905.4419081-CDS-H-paniculata_contig20732:291..429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20732 292..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20732.5384.1prot_H-paniculata_contig20732.5384.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20732 292..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20732.5384.1

>prot_H-paniculata_contig20732.5384.1 ID=prot_H-paniculata_contig20732.5384.1|Name=mRNA_H-paniculata_contig20732.5384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MGGRGYAAVIPGDSFTEEVLVGGMLNFLSIYNILITGRVLLSWVPQ
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mRNA from alignment at H-paniculata_contig20732:292..429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20732.5384.1 ID=mRNA_H-paniculata_contig20732.5384.1|Name=mRNA_H-paniculata_contig20732.5384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig20732:292..429- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGAAGGGGATACGCGGCGGTCATCCCCGGTGACTCCTTCACAGA GGAGGTGCTCGTTGGAGGCATGCTCAATTTCTTGAGTATCTATAACATCC TCATCACCGGCCGGGTCCTTCTGTCCTGGGTACCCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20732:292..429-

>mRNA_H-paniculata_contig20732.5384.1 ID=mRNA_H-paniculata_contig20732.5384.1|Name=mRNA_H-paniculata_contig20732.5384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig20732:292..429- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGAAGGGGATACGCGGCGGTCATCCCCGGTGACTCCTTCACAGA
GGAGGTGCTCGTTGGAGGCATGCTCAATTTCTTGAGTATCTATAACATCC
TCATCACCGGCCGGGTCCTTCTGTCCTGGGTACCCCAGATGGGAGGAAGG
GGATACGCGGCGGTCATCCCCGGTGACTCCTTCACAGAGGAGGTGCTCGT
TGGAGGCATGCTCAATTTCTTGAGTATCTATAACATCCTCATCACCGGCC
GGGTCCTTCTGTCCTGGGTACCCCAG
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