mRNA_H-paniculata_contig20602.5348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20602.5348.1
Unique NamemRNA_H-paniculata_contig20602.5348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.330e-27
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  139 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 242
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 6.770e-26
Identity = 46/103 (44.66%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLV 309
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD++
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDII 240
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.790e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 636
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.810e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISL 249
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.130e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 157
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.260e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 631
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.360e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 610
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.580e-24
Identity = 46/104 (44.23%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + +  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 609
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.370e-24
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+G RR I    G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  229 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISL 332
[Close]
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.350e-24
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 312
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP L C  + PI+ K R +++  G+ L A++DD+ L
Sbjct:   95 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLSCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE4.330e-2745.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE6.770e-2644.66Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJC0_9PHAE1.790e-2545.19Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLG6_9PHAE1.810e-2545.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE6.130e-2545.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE6.260e-2545.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE6.360e-2545.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE1.580e-2444.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE3.370e-2444.23Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KUZ8_9PHAE7.350e-2444.23Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20602contigH-paniculata_contig20602:4187..4498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score69.7
Seed ortholog evalue9.1e-10
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929537.63541-CDS-H-paniculata_contig20602:4186..44981622929537.63541-CDS-H-paniculata_contig20602:4186..4498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20602 4187..4498 -
1691480903.82776-CDS-H-paniculata_contig20602:4186..44981691480903.82776-CDS-H-paniculata_contig20602:4186..4498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20602 4187..4498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20602.5348.1prot_H-paniculata_contig20602.5348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20602 4187..4498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20602.5348.1

>prot_H-paniculata_contig20602.5348.1 ID=prot_H-paniculata_contig20602.5348.1|Name=mRNA_H-paniculata_contig20602.5348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDT
GERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLD
DLVL
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mRNA from alignment at H-paniculata_contig20602:4187..4498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20602.5348.1 ID=mRNA_H-paniculata_contig20602.5348.1|Name=mRNA_H-paniculata_contig20602.5348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig20602:4187..4498- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTGTACTAATGCCTTCAACTCCGCCAAGCGGGCGGC
GATCTTAGAAGAAGTGGCAATCCGCATCCCGGGACTGACACCCTTCGTTG
CCAAATGCTACGGGGAGAAGCCGGCAGACACCATTTTCCTGATGGACACC
GGCGAACGCAGGAGAATCTCCTCGAACACGGGAATCCACCAGGGTGACGG
ACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGACCGATCTTACGCAAGT
CCCGAGAACAATTCGAGGCTCCGGGGTTGGAGCTATTGGCCTTCCTAGAC
GATCTGGTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20602:4187..4498-

>mRNA_H-paniculata_contig20602.5348.1 ID=mRNA_H-paniculata_contig20602.5348.1|Name=mRNA_H-paniculata_contig20602.5348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig20602:4187..4498- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTGTACTAATGCCTTCAACTCCGCCAAGCGGGCGGC
GATCTTAGAAGAAGTGGCAATCCGCATCCCGGGACTGACACCCTTCGTTG
CCAAATGCTACGGGGAGAAGCCGGCAGACACCATTTTCCTGATGGACACC
GGCGAACGCAGGAGAATCTCCTCGAACACGGGAATCCACCAGGGTGACGG
ACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGACCGATCTTACGCAAGT
CCCGAGAACAATTCGAGGCTCCGGGGTTGGAGCTATTGGCCTTCCTAGAC
GATCTGGTGCTGCTTATCGCCCTCGACTGTACTAATGCCTTCAACTCCGC
CAAGCGGGCGGCGATCTTAGAAGAAGTGGCAATCCGCATCCCGGGACTGA
CACCCTTCGTTGCCAAATGCTACGGGGAGAAGCCGGCAGACACCATTTTC
CTGATGGACACCGGCGAACGCAGGAGAATCTCCTCGAACACGGGAATCCA
CCAGGGTGACGGACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGACCGA
TCTTACGCAAGTCCCGAGAACAATTCGAGGCTCCGGGGTTGGAGCTATTG
GCCTTCCTAGACGATCTGGTGCTG
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