mRNA_H-paniculata_contig20602.5347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A2Z6P4F1_TRISU (CCHC-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4F1_TRISU) HSP 1 Score: 85.9 bits (211), Expect = 1.650e-15 Identity = 63/191 (32.98%), Postives = 94/191 (49.21%), Query Frame = 3
Query: 171 KARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGTPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATK--DAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEP-KLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
K RLV QG++Q+ +DY TFAP+ + ++ + +Q +SQ KYV +L ++ M+ A TP +T+ +D + D + + +P + HL+AVK IFRYL G PDV + Y + L Y DA Y + T+G F LV + R Q A+STTEAE +A
Sbjct: 582 KGRLVAQGYNQQEGIDYDETFAPIASVFEMSMMGELGFFLGLQI--KQQEDGIFISQEKYVNDLLKKYKMNEAKIMSTP---MHPSTSLDKDEKGKDVSEKEFQTSPKESHLIAVKRIFRYLVGTPDVGLWYKKGSHFDLQAYCDADYAGDKVERKRTSGACQFLGEALVSWCCRKQNTIALSTTEAEYVA 767
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.120e-15 Identity = 73/220 (33.18%), Postives = 99/220 (45.00%), Query Frame = 3
Query: 150 SKSEGKFKARL--VVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRN-----------KQTGTPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDA------------AATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
S SEG+ A L V W+Q D+G TFAPVCRL++ R+LLA A KD V++ ++ G SQ Y S+LDRF M S P T G + + L A P++ H+ A K + RYL G D ITY R L SDA++ +S + + + V F Q +TA+ST EAEL+A
Sbjct: 368 SSSEGEQSAPLPSVTGRWNQVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEEDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELSAIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVA 587
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A6L2LN47_TANCI (Integrase, catalytic region, zinc finger, CCHC-type, peptidase aspartic, catalytic n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LN47_TANCI) HSP 1 Score: 84.3 bits (207), Expect = 5.590e-15 Identity = 66/194 (34.02%), Postives = 106/194 (54.64%), Query Frame = 3
Query: 165 KFKARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGT---PQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEPKL-LGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
+ +ARLV +G+ Q+ +D+ +FAPV R+E R+ + A +K+ T+ + T +L Q YV S L+ F +++ +PT +K +L A + +PT++HL A+K + RYL+G + + YS+ Y+DA + RST+G+ F + LV +SS+ QK T ISTTEAE IA
Sbjct: 1171 RLQARLVAKGYRQEEGIDFEESFAPVARIEAIRIFITNAASKNMTIYQMDVKTTFLNDELKQEVYV-SQLEGF-VNTDHPTHVYCIKK-----ALYGLKLAPRAWYQTSPTKKHLEALKRVCRYLRGTINWGLWYSKDTAMTPTAYADADHAGCQDTQRSTSGSAQFLGDKLVSWSSKKQKSTTISTTEAEYIA 1357
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A2Z6P6S4_TRISU (CCHC-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P6S4_TRISU) HSP 1 Score: 81.3 bits (199), Expect = 6.290e-14 Identity = 67/218 (30.73%), Postives = 99/218 (45.41%), Query Frame = 3
Query: 171 KARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGTPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDA-----------------------------AATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEP-KLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
KARLV QG++Q+ +DY TF+PV A+ + ++ ++ G +SQ KYV +L ++NM+ A TP +T+ +D + D A + +P + HL+AVK IFRYL G PDV + Y + L Y DA Y ++T+G F LV + R Q A+STTEAE +A
Sbjct: 597 KARLVAQGYNQQEEIDYDETFSPV--------------ARKFMCIKQQEDGI-FISQEKYVNDLLKKYNMNEAKIMSTP---MHPSTSLDKDEKGKDVSKKEYRGMIGSLLYLIASRPDIVFAVGLCARFQTSPKESHLIAVKRIFRYLVGTPDVGLWYQKGSHFDLQAYCDADYTGDKIERKNTSGACQFLGEALVSWCCRKQNTIALSTTEAEYVA 796
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A6L2K2A2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2K2A2_TANCI) HSP 1 Score: 80.9 bits (198), Expect = 8.180e-14 Identity = 68/194 (35.05%), Postives = 109/194 (56.19%), Query Frame = 3
Query: 165 KFKARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLR-NKQTG--TPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSR-CEPKLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
K KARLV +G+ Q+ +D+ +FAPV R+E R+ +A AT+K+ T+ + + +T +L + YV S + F + +PT +K + S + +PT+++L A+K +FRYL+G + + YS+ +L Y+DA + RST+ + F + LV +SS+ QK TAISTTEAE IA
Sbjct: 815 KNKARLVAKGYRQEEGIDFEKSFAPVTRIEAIRIFIANATSKNMTIYQMDVKTAFLNDELKEEVYV-SQPEGF-VDPDHPTHVYRLKKALYXVKTGPSGMA-------SPTKKYLEALKQVFRYLKGTINGGLWYSKDIAIELTTYADADHAGCQDTRRSTSRSAQFLGDKLVSWSSKKQKSTAISTTEAEYIA 999
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A2Z6NHP6_TRISU (CCHC-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NHP6_TRISU) HSP 1 Score: 80.5 bits (197), Expect = 1.140e-13 Identity = 68/218 (31.19%), Postives = 100/218 (45.87%), Query Frame = 3
Query: 171 KARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGTPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDA-----------------------------AATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEP-KLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
KARLV QG++Q+ +DY TFAPV E + ++ ++ ++ G +SQ KYV +L ++ M+ A TP +T+ +D + D A + +P + HL+AVK IFRYL G+PDV + Y + L Y DA Y +ST+G F LV + R Q A+STTEAE +A
Sbjct: 379 KARLVAQGYNQQEGIDYDETFAPVDS-EFEMSMMGELGFFLGLQIKQQEDGI-FISQEKYVNDLLKKYKMNEAKIMSTP---MHPSTSLDKDEKGKDVSEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTSPKESHLIAVKRIFRYLVGNPDVGLWYKKGSHFDLQAYCDADYAGDKIERKSTSGACQFLGEALVSWCCRKQNTIALSTTEAEYVA 591
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A2Z6NRJ1_TRISU (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NRJ1_TRISU) HSP 1 Score: 79.7 bits (195), Expect = 2.050e-13 Identity = 70/219 (31.96%), Postives = 98/219 (44.75%), Query Frame = 3
Query: 171 KARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGTPQ-LSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDA-----------------------------AATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEP-KLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
KARLV QG++Q+ +DY TFAPV ++ + L+ KQ +SQ KYV +L ++ MS A TP +T+ +D + D A + +P + HL+AVK IFRYL G PDV + Y + L Y DA Y +ST+G F LV++ R Q A+STTEAE +A
Sbjct: 146 KARLVAQGYNQQEGIDYDETFAPVASEFEMSMM---GELGFFLGLQIKQLEDEIFISQEKYVNDLLKKYKMSEAKIMSTP---MHPSTSLDKDEKGKDVSEKEYRGMIGSLLYLTASRPDIVFTVGLCARFQTSPKESHLIAVKRIFRYLVGTPDVGLWYKKGSHFDLQAYCDADYAGDKIERKSTSGACQFLGEALVNWCCRKQNTIALSTTEAEYVA 358
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A2Z6LY43_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LY43_TRISU) HSP 1 Score: 79.7 bits (195), Expect = 2.080e-13 Identity = 65/215 (30.23%), Postives = 97/215 (45.12%), Query Frame = 3
Query: 171 KARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGTPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLD--------------------------AAATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEP-KLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
KARLV QG++Q+ +DY TFAPV E + ++ + ++ ++ G +SQ KYV +L ++ M+ + TP + S + + + A + +P + HL AVK IFRYL G PDV + Y + L Y DA Y +ST+G F LV + R Q A+STTEAE +A
Sbjct: 295 KARLVAQGYNQQEGIDYDETFAPVAS-EFEMSMMGELSFFLGLQIKQQEDGI-FISQEKYVNDLLKKYKMNESKIMSTPMHPSTSLDKDEKGKDVFEKEYRGMIGSLLYLTASRPHIVFVVSLCARFQTSPKESHLTAVKRIFRYLVGTPDVGLWYKKGSHFDLQAYCDADYAGDKIERKSTSGACQFLGEALVSWCFRKQNTIALSTTEAEYVA 507
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A2Z6NQI0_TRISU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NQI0_TRISU) HSP 1 Score: 77.4 bits (189), Expect = 1.210e-12 Identity = 65/218 (29.82%), Postives = 99/218 (45.41%), Query Frame = 3
Query: 171 KARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGTPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKD-----------------------------APTQQHLVAVKLIFRYLQGHPDVPITYSRCEP-KLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
KARLV QG++Q+ +DY TF PV E + ++ ++ ++ G +SQ KYV +L ++ M+ + TP ++T+ +D + D + ++ +P + HL AVK IFRYL G PDV + Y + L Y DA Y +ST+G F LV + R Q A+STTEAE +A
Sbjct: 384 KARLVAQGYNQQEGIDYDETFVPVAS-EFEMSMMGELGFFLGLQIKQQEDGI-FISQEKYVNDLLKKYKMNESKIMSTP---MHASTSLDKDEKGKDVSEKENRGMIGSLLYLTASRPDIVFAVGLCARFQTSPKESHLTAVKRIFRYLVGTPDVGLWYKKGSHFDLQAYCDADYAGDKVERKSTSGACQFLGEALVSWCCRKQNTIALSTTEAEYVA 596
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Match: A0A2Z6NAY6_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NAY6_TRISU) HSP 1 Score: 77.4 bits (189), Expect = 1.310e-12 Identity = 67/218 (30.73%), Postives = 98/218 (44.95%), Query Frame = 3
Query: 171 KARLVVQGWSQKHWVDYGSTFAPVCRLENQRLLLARATAKDWTVLRNKQTGTPQLSQHKYVPSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDA-----------------------------AATKDAPTQQHLVAVKLIFRYLQGHPDVPITYSRCEP-KLLGYSDASYC-----TRSTTGTMFFFANVLVHFSSRPQKITAISTTEAELIA 719
KARLV QG++Q+ +DY TF PV E + ++ ++ ++ G +SQ KYV +L ++ M+ A TP +T+ +D + D A + +P + HL+AVK IFRYL G PDV + Y + L Y DA Y +ST+G F LV + R Q A+STTEAE +A
Sbjct: 553 KARLVAQGYNQQEGIDYDKTFDPVAS-EFEMSMMGEHGFFLGLKIKQQEDGI-FISQEKYVNDLLKKYKMNEAKIMSTP---MHPSTSLDKDEKGKDVSEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTSPKESHLIAVKRIFRYLVGTPDVGLWYKKGSHFDLQAYCDADYLGDKIERKSTSGACQFLGEALVSWCCRKQNTIALSTTEAEYVA 765 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20602.5347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20602.5347.1 >prot_H-paniculata_contig20602.5347.1 ID=prot_H-paniculata_contig20602.5347.1|Name=mRNA_H-paniculata_contig20602.5347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp MSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKDAPTQQHLVAVKLIFRYback to top mRNA from alignment at H-paniculata_contig20602:561..1772- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20602.5347.1 ID=mRNA_H-paniculata_contig20602.5347.1|Name=mRNA_H-paniculata_contig20602.5347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig20602:561..1772- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20602:561..1772- >mRNA_H-paniculata_contig20602.5347.1 ID=mRNA_H-paniculata_contig20602.5347.1|Name=mRNA_H-paniculata_contig20602.5347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig20602:561..1772- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |