mRNA_H-paniculata_contig10830.533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10830.533.1
Unique NamemRNA_H-paniculata_contig10830.533.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: D8LCQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 9.830e-25
Identity = 48/54 (88.89%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            +VL+GED+GVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELG++AK+
Sbjct:  459 KVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGDAAKI 512
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: A0A7S0C779_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C779_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.240e-20
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            + L+GED+GVVVEFVNPKYK  +RTEFKKPTRLECMMQDFPKL+ KE+G  A V
Sbjct:  365 KTLKGEDEGVVVEFVNPKYKDETRTEFKKPTRLECMMQDFPKLLQKEMGKEANV 418
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: A0A7S2Y4M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4M2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.250e-20
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            +VL+GEDQGVVVEFVNPKYK  +RT FKKP RLE MMQDFPKLMSKELGN A++
Sbjct:  371 KVLEGEDQGVVVEFVNPKYKDEARTLFKKPARLESMMQDFPKLMSKELGNHARI 424
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: A0A7R9VXE0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXE0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.260e-19
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            + L+GEDQGVVVEFVNPKYK  +RTEFKKPTRLECMMQD PKL  KE+G+ A +
Sbjct:  117 KTLRGEDQGVVVEFVNPKYKDDTRTEFKKPTRLECMMQDIPKLFQKEMGSDANI 170
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: A0A1E7FM17_9STRA (UDP-sugar pyrophosphorylase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FM17_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.530e-19
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            + L+GEDQGVV+EFVNPKYK  +RT+FKKPTRLECMMQD PKL  KELGNS  +
Sbjct:  457 KTLRGEDQGVVLEFVNPKYKDETRTDFKKPTRLECMMQDIPKLFQKELGNSVNI 510
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: B8CC52_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC52_THAPS)

HSP 1 Score: 88.6 bits (218), Expect = 3.440e-19
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            + L+GEDQGVV+EFVNPKYK  +RTEFKKPTRLECMMQD PKL  KE+G+ A +
Sbjct:  358 RTLRGEDQGVVIEFVNPKYKDDARTEFKKPTRLECMMQDIPKLFQKEMGSEANI 411
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: A0A7S2MCW7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MCW7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.460e-19
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            + L+GEDQGVVVEFVNPKYK  +RT+FKKPTRLECMMQD PKL  KELG+ A +
Sbjct:  498 KTLRGEDQGVVVEFVNPKYKDDTRTDFKKPTRLECMMQDIPKLFQKELGSEANI 551
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: A0A7S0TFS1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0TFS1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.690e-19
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            + L+GEDQGVV+EFVNPKYK  +RTEFKKPTRLECMMQD PKL  KE+G+ A +
Sbjct:  460 KTLRGEDQGVVIEFVNPKYKDETRTEFKKPTRLECMMQDIPKLFQKEMGSEANI 513
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: B7GCG1_PHATC (Precursor of phosphorylase udp-glucose diphosphorylase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GCG1_PHATC)

HSP 1 Score: 88.2 bits (217), Expect = 4.720e-19
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            + L+GEDQGVV+EFVNPKYK  SRTEFKKPTRLECMMQD PKL  KE+G  A +
Sbjct:  460 KTLRGEDQGVVLEFVNPKYKDASRTEFKKPTRLECMMQDIPKLFQKEMGAEANI 513
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BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Match: A0A4D9D7Z1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7Z1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.210e-18
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGNSAKV 162
            +VLQGE QGVV EFVNPK+K  SRT F KPTRLECMMQDFPKL++KE+G  A+V
Sbjct:  305 RVLQGEAQGVVEEFVNPKFKDSSRTAFTKPTRLECMMQDFPKLLAKEIGGKARV 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10830.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ2_ECTSI9.830e-2588.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0C779_9STRA7.240e-2075.93Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2Y4M2_9STRA7.250e-2079.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9VXE0_9STRA1.260e-1974.07Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FM17_9STRA2.530e-1974.07UDP-sugar pyrophosphorylase n=1 Tax=Fragilariopsis... [more]
B8CC52_THAPS3.440e-1972.22Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2MCW7_9STRA3.460e-1974.07Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0TFS1_9STRA4.690e-1972.22Hypothetical protein (Fragment) n=2 Tax=Skeletonem... [more]
B7GCG1_PHATC4.720e-1974.07Precursor of phosphorylase udp-glucose diphosphory... [more]
A0A4D9D7Z1_9STRA2.210e-1874.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10830contigH-paniculata_contig10830:8034..8198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D8LCQ2
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K00972,ko:K12447
KEGG ReactionR00289,R00416,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014,M00361,M00362
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG4284@1,KOG2388@2759
EC2.7.7.23,2.7.7.64,2.7.7.83
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928787.6240504-CDS-H-paniculata_contig10830:8033..81981622928787.6240504-CDS-H-paniculata_contig10830:8033..8198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10830 8034..8198 -
1691480619.8423398-CDS-H-paniculata_contig10830:8033..81981691480619.8423398-CDS-H-paniculata_contig10830:8033..8198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10830 8034..8198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10830.533.1prot_H-paniculata_contig10830.533.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10830 8034..8198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10830.533.1

>prot_H-paniculata_contig10830.533.1 ID=prot_H-paniculata_contig10830.533.1|Name=mRNA_H-paniculata_contig10830.533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
QVLQGEDQGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGN
SAKV*
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mRNA from alignment at H-paniculata_contig10830:8034..8198-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10830.533.1 ID=mRNA_H-paniculata_contig10830.533.1|Name=mRNA_H-paniculata_contig10830.533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig10830:8034..8198- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTACTGCAAGGCGAGGACCAAGGAGTTGTGGTGGAGTTCGTCAACCC
GAAGTACAAAGCCGGTAGCAGGACGGAGTTCAAGAAGCCGACACGGCTGG
AGTGCATGATGCAAGACTTCCCGAAGCTCATGTCCAAGGAATTAGGAAAC
TCGGCCAAGGTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10830:8034..8198-

>mRNA_H-paniculata_contig10830.533.1 ID=mRNA_H-paniculata_contig10830.533.1|Name=mRNA_H-paniculata_contig10830.533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig10830:8034..8198- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTACTGCAAGGCGAGGACCAAGGAGTTGTGGTGGAGTTCGTCAACCC
GAAGTACAAAGCCGGTAGCAGGACGGAGTTCAAGAAGCCGACACGGCTGG
AGTGCATGATGCAAGACTTCCCGAAGCTCATGTCCAAGGAATTAGGAAAC
TCGGCCAAGGTATAGCAGGTACTGCAAGGCGAGGACCAAGGAGTTGTGGT
GGAGTTCGTCAACCCGAAGTACAAAGCCGGTAGCAGGACGGAGTTCAAGA
AGCCGACACGGCTGGAGTGCATGATGCAAGACTTCCCGAAGCTCATGTCC
AAGGAATTAGGAAACTCGGCCAAGGTATAG
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