mRNA_H-paniculata_contig2052.5318.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2052.5318.1
Unique NamemRNA_H-paniculata_contig2052.5318.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2052.5318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2052contigH-paniculata_contig2052:4207..8192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size370
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2052.5318.1prot_H-paniculata_contig2052.5318.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2052 4209..8192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.310321-CDS-H-paniculata_contig2052:4208..42461622929534.310321-CDS-H-paniculata_contig2052:4208..4246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 4209..4246 -
1691480902.5924377-CDS-H-paniculata_contig2052:4208..42461691480902.5924377-CDS-H-paniculata_contig2052:4208..4246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 4209..4246 -
1622929534.3238463-CDS-H-paniculata_contig2052:4532..46131622929534.3238463-CDS-H-paniculata_contig2052:4532..4613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 4533..4613 -
1691480902.603036-CDS-H-paniculata_contig2052:4532..46131691480902.603036-CDS-H-paniculata_contig2052:4532..4613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 4533..4613 -
1622929534.3553956-CDS-H-paniculata_contig2052:6954..70411622929534.3553956-CDS-H-paniculata_contig2052:6954..7041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 6955..7041 -
1691480902.61046-CDS-H-paniculata_contig2052:6954..70411691480902.61046-CDS-H-paniculata_contig2052:6954..7041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 6955..7041 -
1622929534.3717523-CDS-H-paniculata_contig2052:7380..74731622929534.3717523-CDS-H-paniculata_contig2052:7380..7473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 7381..7473 -
1691480902.6182775-CDS-H-paniculata_contig2052:7380..74731691480902.6182775-CDS-H-paniculata_contig2052:7380..7473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 7381..7473 -
1622929534.3878207-CDS-H-paniculata_contig2052:8125..81921622929534.3878207-CDS-H-paniculata_contig2052:8125..8192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 8126..8192 -
1691480902.6259372-CDS-H-paniculata_contig2052:8125..81921691480902.6259372-CDS-H-paniculata_contig2052:8125..8192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2052 8126..8192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2052.5318.1

>prot_H-paniculata_contig2052.5318.1 ID=prot_H-paniculata_contig2052.5318.1|Name=mRNA_H-paniculata_contig2052.5318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
EHCDASSPCCDGYQCENSICTVIPPPCRGNAEWCDASSPCCDGYQCDNSI
CTVVCTKLDDFCSIDADCCDDLECDQDSWKCKVPSVCLPDGGDCSSGREC
CGDYECYNGECASEPRCIPEDV
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mRNA from alignment at H-paniculata_contig2052:4207..8192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2052.5318.1 ID=mRNA_H-paniculata_contig2052.5318.1|Name=mRNA_H-paniculata_contig2052.5318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3986bp|location=Sequence derived from alignment at H-paniculata_contig2052:4207..8192- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATTGCGACGCCTCCTCGCCGTGCTGCGACGGCTACCAGTGCGAAAA
CAGCATCTGTACCGTCAGTAAGTATTACCTTCGTTGCAGGATAGCTGTGT
GTGATTTTGTATGATACGAAGTTCTCGAAGACGAGTGTAACACTCGGCTT
AGGTGGCTAGACGGTGTATTACGCTTGTCGTCCTATAGACCGTGGTCGTT
TATGCTTCTCGCCAACGATACGTGTCGCCTTCATCGAGAAACCACACACG
CTTCCAAGGAAATTGATCCTATTCTAGGGCAGGTATTTAGGCGGGAAGAT
TCCACTTCCGCTTTGTCTCGCTTCGACGACGCGGGGAAATTGGTTCCGCG
AAGTCGAACAGAAACAAGATTCTCGTATGTTGGGAGACATTTTGCACACA
GTGGGCTCCGCGAGGCAACAAAAATAGTGACCAAGGGTGGTGGAATACCA
AATAAGATCAAGGAAACAGTACCGCGATAGTGGCCGTGAGGAAGCTCATT
ATCCCCGGTCCAATGAGACCTGATTCGGGGCCGTAGCTCTGTATCCGACC
GGGTTGTATATGGGTACAAACCAGTATGCGCAGGCCATTTAGGAGCCGGT
TGCAGGTAGAAGCTACAGCATTTTTCTTGGCCACCATACATAATATTGCG
TCTGCCATGCATCGACCACCATCCGCCGAACGGTCGATTTCTTGTCTGAT
TGTTTTTTTTGGCGTTCAGTTCCTCCTCCCTGCCGAGGAAATGCGGAATG
GTGCGACGCCTCCTCGCCGTGCTGCGACGGCTACCAATGCGACAACAGCA
TCTGTACAGTCGGTGTGTGTGGAATTGTTTTAGAAAATGTTGGCAGTGGT
GTTACTACTCCCACGGCTATACCTGGTAAATTTTGGGAGCGATCGTGCAA
ACGTCGCACCTTGTCGTACCGACCGAGTCAGGTGCAAGACGATGCACGAG
CATCGTTGCTTTCCTGTTTTGTTGATGGCTACTAGGTAATTGAGGCAACA
TCCTCAGCAAGAAACTTTTGAGTCCGGCCAAGGCAATTTTTTCGCTTCTT
GGCACGTCAACAACAGGAGTTCCGACTTGTAATGGGGATATTGCTAGTCG
GCAACTATATGTCGCTTGCTCACTTCGGCCCTTGTGTGTATTTTTTTGCA
GTATGCACTAAGCTGGACGATTTCTGCAGCATCGACGCTGACTGTTGCGA
TGACCTCGAGTGTGACCAAGATTCTTGGAAATGCAAAGGTACGTTTCCAT
AGCCCATTCTCAGGAACTGGTAGGAATGAGGTTTCGCCCCTCCCTTCTCC
GCTTGCAACTCCGATGGTGCTCTTAGAGTATCTTGTGGCGCAATCTCGGC
CTGTTTTGTTTTCGTCACTCATCGCAAGAAATCAAACCATCCGTGCAGTC
GCTACATGATTCTCCGAATATCCGGATTTCGGTCGTGTTATTTTCTTGTC
ACAACACGCTGGCGTGTGTGTTTGTGGTGCTTTCCATTTTTGGTTGCGCT
TCTCAAAATTGTAGACGTGTGCTCCATATTATCTAATGCGTTGTGGCTAT
TAGAATGACTCCTTCTAGAGACTGACCTAAGGCTGCGAGACACTCGGAAA
CTGTGTCCGCTCAAACTAAACTCAAATTTCAGGTGAAAAGCTTGCCCATT
GGGCGCCCCATGGCTCTCGACAAACCACGCGAAATCAGTACCATCCTACA
TGTAATCGTAAACATAAAATTAGTTGAACTGTGGAAGTAAATTTCTTAAT
GTCTTACGCTCGGTGCCGTGAACAGTGAACATTGTGACGCTCTCCCAAAT
AACGGCACCGAGTTCCCAGCGCGTGATATTTGCGCGTGGTTCAGAGAGAA
CAGTTTTTGGAGTGCTGTCAGTGGTGACTTCGCGTCGACCTTGAGGTCAG
ATGGTATTGAGTAAAGGAATGGTCTCGGCGCTAGCAGCTACTTCGATTCA
CAAAACTACAACGAGAGGCCCCGTAACGTAAAGGGAAATGCGAGAATATG
GCCTATCAGCCACCAGCGCAGCAGCAGTCGAGCAAAACAAATTGCGACGG
TAGCAAGCTTGCGTGAGGTGATCTTAAACGTCAATGAAGACATGCAGAGC
TAGAGAGCCACGAATGTGCCCCCCTCCACACGGCTCTTTTGTTTTGCACG
GGCAATGATCGACGCATGTGACTACTACAGGCCATTGCACTTGGCCATCA
AATTTGATCCTGCCGCTATTGCAATGGAACACTTGGGCCGCGTTCGTGCT
CGCTCGTTGCCCATCGAATCGTGACAAGAGACGGCCATCCCACAATACAC
TGTTTTCCGCGGCTACGTGTGCCTCACACACACGTCACGAATCGCTGAAA
GTGTTTGCGAAAAAGCAAGTTGAAGTTGAACAACGCCTTTTTTTTCTTTT
TTTCAAATCTGCAGTCTCCTGGACGTAATGCAAATGCAGAAAATTACGCA
TAAACAAACTGCTATTTTGCTATTTTGCTATTTGTACTTTTCAAGATTTT
CCTAGATCTCGTGTTTTTCTGTTCGCTTGCGAAATGTTTCCCTGTACACA
GCACCTCGAATACCGGCCTTCGGGTTTGTTAATACGACCACAATGATGCT
TGTAGAAACGGTGCACATGATGCCCCTTGCATATAGTGTTCGCGCAAAAT
GAATTCATGTTATAAATCTCGGTTTGGTGGTATATAGCTAACAATGACTT
GCTGGCGGTAGACCCCCTTCGGACTCCAGCTCATCCTACAAAACACCGCC
TCGATACCAAGGAAATTCGTTTAGTAAAAAGACGGTGCAGGTGAACTGAG
ATCCGGGATGGGGAGCGCACTGTTAGCTATACACGACTAAATAGCAATGA
ACTGAACAAAGGATTTCGTTTTGCATAACACCCTAATGACGTGAGTCCGA
CCATCCAATCGAGAGCTATCCGGGTCTCAACTTTATGGTTCCCGTTGGGT
GCCACATTCTGAGATTTAAAAACAATACGAGCTGAAGATGTTAAGATGCA
CTATGATTAGTCACAAGTGCGAAAATTTCTGTCCAACTTTGACTACGCCT
TTTTTTGTTTGTATGCAGTATTTCCCCCCATATATAACCAATTGACCAGG
AAATGTTGTTTTGCCATCTGTTGACCATCATCCGTCAATCTGGAGCATTG
ACTCTTTTTTCTAATGTTCGTGAACAGTGCCTATGATCTGGCTACGTGTG
TAACACCAACGAGTGTATAGATGTGTTGAATTCTGGGAAAGCATTACTCA
TGGTTCGTACGAAACTTGATGATTACATGGCAATTCGCGTTCCTTGTCTC
GGGGAAAGTGCACGTTTGTGCACCTTGCCATATAGGCATGCGCACAATCA
CTGTGAACGGGACATCGTTTACGCGGTATAGGACTCAAGTGGCGGTATTG
TTATACTCGGATTCGCTCGTAAAATATCCTTCCCTCGGTATTTGGCACAG
CGACAGAATGAGTGCCTGTGTACCGAAGCTAATATTTGCCGTCTTGGCAT
GCCATATGATTTTACCCCACTCATAGGATCGCACGTTTTCTCGATTTTTC
CCCAAAATTACGTCGGAATTTTCACGCAGTGCCCTCGGTATGCCTGCCAG
ACGGCGGCGACTGCAGCTCAGGAAGGGAGTGCTGTGGTGACTATGAGTGC
TACAATGGAGGTGCGCCACTCGACTTGGCGTCGTGAGTGGGAATTGTCAA
GAAAACCTCGTTGACCTCTTCGGGTTTTTTTCGACTGAGGGACTTCTCTT
GAATATAATGTGTGCATGATTATAATCCTGCACAGCACATCTGTTGCGTC
ATGCATGTATCGGCTTGCATTGACCCAAATGAATCCTCTCCGGAAATTTG
TTTTTGCAGCGGTCACTTTTTTCTTCTAAACGGAGTCTCTACCCTTTCGT
CGGAACTTGTTTCCTTTTGCATGACTCATGCCGAACGCGGGAGCAGAATG
CGCTAGCGAGCCACGTTGCATCCCCGAGGACGTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2052:4207..8192-

>mRNA_H-paniculata_contig2052.5318.1 ID=mRNA_H-paniculata_contig2052.5318.1|Name=mRNA_H-paniculata_contig2052.5318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig2052:4207..8192- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATTGCGACGCCTCCTCGCCGTGCTGCGACGGCTACCAGTGCGAAAA
CAGCATCTGTACCGTCAGAACATTGCGACGCCTCCTCGCCGTGCTGCGAC
GGCTACCAGTGCGAAAACAGCATCTGTACCGTCATTCCTCCTCCCTGCCG
AGGAAATGCGGAATGGTGCGACGCCTCCTCGCCGTGCTGCGACGGCTACC
AATGCGACAACAGCATCTGTACAGTCGTTCCTCCTCCCTGCCGAGGAAAT
GCGGAATGGTGCGACGCCTCCTCGCCGTGCTGCGACGGCTACCAATGCGA
CAACAGCATCTGTACAGTCGTATGCACTAAGCTGGACGATTTCTGCAGCA
TCGACGCTGACTGTTGCGATGACCTCGAGTGTGACCAAGATTCTTGGAAA
TGCAAAGTATGCACTAAGCTGGACGATTTCTGCAGCATCGACGCTGACTG
TTGCGATGACCTCGAGTGTGACCAAGATTCTTGGAAATGCAAAGTGCCCT
CGGTATGCCTGCCAGACGGCGGCGACTGCAGCTCAGGAAGGGAGTGCTGT
GGTGACTATGAGTGCTACAATGGAGTGCCCTCGGTATGCCTGCCAGACGG
CGGCGACTGCAGCTCAGGAAGGGAGTGCTGTGGTGACTATGAGTGCTACA
ATGGAGAATGCGCTAGCGAGCCACGTTGCATCCCCGAGGACGTAAATGCG
CTAGCGAGCCACGTTGCATCCCCGAGGACGTA
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