mRNA_H-paniculata_contig20470.5306.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20470.5306.1
Unique NamemRNA_H-paniculata_contig20470.5306.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: D8LS07_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS07_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.960e-27
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 3 
Query:  129 QIVRACELNPSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADLNAW 305
            Q++RA ELN SCS+CLF Y ++E VTLLPCGHLYHTECIDIWM DHVDCPYCRAD+N W
Sbjct:  311 QVIRASELNASCSVCLFGYFVDEAVTLLPCGHLYHTECIDIWMRDHVDCPYCRADMNVW 369
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.800e-14
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:   99 GAEG-IRAQPGQIVRACELNPSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADLN 299
            GA+G  RA    +VR  EL   C+ICL +Y   EEV +LPC H++H EC+D+W+  H  CPYC+ DLN
Sbjct:  395 GADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLN 462
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.420e-13
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:  111 IRAQPGQIVRACELNPSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADLN 299
            +RA    +VR  EL   C+ICL +Y   EEV +LPC H++H EC+D+W+  H  CPYC+ DLN
Sbjct:  306 LRANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLN 368
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: A0A7S1VRK2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VRK2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.900e-11
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:  153 NPSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADLNA 302
             PSC+ICL EY   E++  LPCGH+YH EC+D W  +HV CP C  DL +
Sbjct:  147 GPSCTICLGEYEEGEKLVKLPCGHVYHEECVDSWTTNHVRCPLCNFDLES 196
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: A0A7S2HAW0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HAW0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.150e-11
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:  156 PSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADL 296
            PSCSICL EY   E +T LPCGH+YH EC+  W+++HV CP C  DL
Sbjct:  372 PSCSICLCEYEEGESLTRLPCGHVYHEECVSAWVSNHVRCPLCNYDL 418
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: A0A7R9Z645_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z645_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.680e-11
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 3 
Query:  153 NPSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADLNAWG 308
             PSCSICL +Y   E +  LPCGH+YH EC+  W+++HV CP C  DL A G
Sbjct:  331 QPSCSICLGDYEEGERLIRLPCGHVYHEECVSAWVSNHVRCPLCNYDLEAGG 382
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: D8SNW3_SELML (RING-type domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SNW3_SELML)

HSP 1 Score: 65.1 bits (157), Expect = 1.960e-10
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:  153 NPSCSICLFEYLLEEEVTLLP-CGHLYHTECIDIWMADHVDCPYCRADL 296
             P C++CL ++   E+V LLP CGHL+H +CID+W+  H  CP CR +L
Sbjct:   27 GPECTVCLLQFEENEQVRLLPDCGHLFHADCIDMWLETHSTCPLCRRNL 75
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BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: A0A8J5HY28_ZINOF (RING-type domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HY28_ZINOF)

HSP 1 Score: 68.9 bits (167), Expect = 6.180e-10
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:  162 CSICLFEYLLEEEVTLLP-CGHLYHTECIDIWMADHVDCPYCRADLNA 302
            C++C+ E+  EE + LLP C H++HTECID W+ADH  CP CRADL A
Sbjct:  134 CAVCISEFEEEEVIRLLPGCCHVFHTECIDAWLADHATCPVCRADLVA 181
[Close]
BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: A0A7S4IUE7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUE7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.750e-10
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:  153 NPSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADLNA 302
             P+CSICL +Y   E +  LPCGH+YH EC+  W+++HV CP C  DL A
Sbjct:  384 QPACSICLGDYEEGERLVRLPCGHVYHEECVTAWVSNHVRCPLCNYDLEA 433
[Close]
BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Match: A0A383VZJ0_TETOB (RING-type domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VZJ0_TETOB)

HSP 1 Score: 69.3 bits (168), Expect = 6.820e-10
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 3 
Query:  156 PSCSICLFEYLLEEEVTLLPCGHLYHTECIDIWMADHVDCPYCRADL 296
            PSC++CL EY+ EE V  LPCGH +H  CID WMA+H  CP CR  L
Sbjct:  979 PSCTVCLGEYVAEELVRQLPCGHEFHQACIDQWMANHGTCPICRMPL 1025
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20470.5306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS07_ECTSI7.960e-2777.97RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JT04_9PHAE8.800e-1450.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LAX1_ECTSI1.420e-1349.21RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1VRK2_9STRA3.900e-1154.00Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2HAW0_9STRA6.150e-1159.57Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9Z645_9STRA9.680e-1153.85Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
D8SNW3_SELML1.960e-1048.98RING-type domain-containing protein (Fragment) n=3... [more]
A0A8J5HY28_ZINOF6.180e-1058.33RING-type domain-containing protein n=2 Tax=Zingib... [more]
A0A7S4IUE7_9STRA6.750e-1052.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A383VZJ0_TETOB6.820e-1059.57RING-type domain-containing protein n=2 Tax=Tetrad... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20470contigH-paniculata_contig20470:1187..4027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size715
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20470.5306.1prot_H-paniculata_contig20470.5306.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20470 1261..2631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.4770038-UTR-H-paniculata_contig20470:1186..12601622929532.4770038-UTR-H-paniculata_contig20470:1186..1260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20470 1187..1260 -
1691480901.7307708-UTR-H-paniculata_contig20470:1186..12601691480901.7307708-UTR-H-paniculata_contig20470:1186..1260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20470 1187..1260 -
1622929532.5115862-UTR-H-paniculata_contig20470:2631..26461622929532.5115862-UTR-H-paniculata_contig20470:2631..2646Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20470 2632..2646 -
1691480901.7616746-UTR-H-paniculata_contig20470:2631..26461691480901.7616746-UTR-H-paniculata_contig20470:2631..2646Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20470 2632..2646 -
1622929532.524077-UTR-H-paniculata_contig20470:3788..40271622929532.524077-UTR-H-paniculata_contig20470:3788..4027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20470 3789..4027 -
1691480901.7799196-UTR-H-paniculata_contig20470:3788..40271691480901.7799196-UTR-H-paniculata_contig20470:3788..4027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20470 3789..4027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.4870067-CDS-H-paniculata_contig20470:1260..13971622929532.4870067-CDS-H-paniculata_contig20470:1260..1397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20470 1261..1397 -
1691480901.7393143-CDS-H-paniculata_contig20470:1260..13971691480901.7393143-CDS-H-paniculata_contig20470:1260..1397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20470 1261..1397 -
1622929532.4996974-CDS-H-paniculata_contig20470:2381..26311622929532.4996974-CDS-H-paniculata_contig20470:2381..2631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20470 2382..2631 -
1691480901.7538476-CDS-H-paniculata_contig20470:2381..26311691480901.7538476-CDS-H-paniculata_contig20470:2381..2631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20470 2382..2631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20470.5306.1

>prot_H-paniculata_contig20470.5306.1 ID=prot_H-paniculata_contig20470.5306.1|Name=mRNA_H-paniculata_contig20470.5306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MADHVDCPYCRADLNAWGSGRVGEGREARGRNCPNRAGAAAADAAAAAAA
AAAAAAAAATTVAIASTAAADSSPSASLLATNGVMSRAAARESAGGTAGA
PDRDADGAAGLDLPHASVGHPPWAAGVL*
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mRNA from alignment at H-paniculata_contig20470:1187..4027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20470.5306.1 ID=mRNA_H-paniculata_contig20470.5306.1|Name=mRNA_H-paniculata_contig20470.5306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2841bp|location=Sequence derived from alignment at H-paniculata_contig20470:1187..4027- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGAGAAGATCATACGCCAATCGGAGAAATTGGTGAGAGATCGAGAAAA
GGTGGCGGGGCATTGGGAGGCGGCGGCGGCGGCGGCGGGGGAGGGCAGGG
GGCGGAGGGGATCAGGGCGCAGCCCGGGCAGATCGTGCGCGCGTGCGAAC
TGAATCCGTCTTGCTCGATATGCTTGTTCGAGTACTTGTTGGAGGAGGAG
GTTACCCTGTTACCTTGCGGGCACCTTTATCACACGGAGGTGTGTTTGTC
AATCGGGTGGGCGGACGGGGAGATGGGGGAGAGGGCGGTGGATGTGTATG
TAGTGAAGGCCTGACTGTCATGAGACGTATAGAAAGCCTCGTTCACAAGT
CAACTGACTTTTACCCCTGCCTACAGTATTATTTTGTCCTTGGAAGTGTC
GTGAAAAAGCTTTGCTGTACACGTTGAGTTTATGCAGCCCGCCTAAGTAT
AAGCTGGGTACACTTGTAGTATCAGCAAAATCGGACCAAAGAAAGCATTG
TATGTGGTTTGTATTTTGTGTGTAAGCACTCTTGAGCATTTTGAACCTTG
AGAAAGCGGCATGTCTCCTCGGTACATAGTCAATTTTTCGTTTTGGATGT
CCTCGGGTCATGTCTGGGTGCAGCCTCGTTATGTCATAAATGTCTACATA
CACGTCTCCAAATCGCCGAAAATGTCAAATCGCTCTACCGGCCGAGGGGG
CGGGTAAGCTCTATTGCAACCATGCTAAGGTTGTAAAGCTGACCTCAAAC
TTCAGTTGTGCACATCTATCAGCAAAAATAGATGAATGAGGGATACTCAT
GAAAGCTCATATCGTAGTCTCTTGACCATTGGGTTCGCATAGCTACAATG
CCGGAACGGAGCATGCCGGTTTTTCGCCGGCCAGGCTCCGTTTCCCAAGG
GTGACACTAGCCACTAGTCATTATCCTTGTGTTGCTACACTAACCGGATT
CTGCCATGGAGTTTTAGGCATTTCGGGTTTCCAAGCGTAGCACGTTCAGC
AGGCGCGATTATACCCCAAGGATCGATCGGGACTCCGCTCTTCACGGGGG
CGGGGGGGGGATAAGGAGTGTGTGCACCACTCGGATAAATGAATGGGACC
CTGTGTACAGACAGTATCTAGCCACTTTTCCCCCACGAGTTTGAGCTTTT
ATCGATGATATGACCCGACCACATGACTCGACAAAATACATGAACTCAAG
TGTATCTACCGTTTGCCGATCTTACTCAGATGGTAATTGCATCAATTTAG
ATTTTTTCATTTTTCTAGCCTCCTCAACCACTTTGCCTCTCTCTCTCTCT
CTCTTTGCGCGTGTCTCGTCTACGTGTGATGGTATCTCCCCCATTTATTT
TTATACTTTCTTTTTCCAAACCACGCAAAAGTGCATAGACATATGGATGG
CCGATCACGTTGATTGCCCTTACTGCCGGGCCGACCTGAACGCCTGGGGT
TCGGGCAGGGTCGGTGAAGGGAGAGAAGCGCGGGGGCGCAATTGTCCCAA
TCGCGCGGGCGCGGCTGCCGCCGATGCCGCCGCCGCCGCCGCCGCCGCAG
CAGCAGCAGCAGCAGCAGCAGCAACTACAGTAGCTATAGCAAGCACTGCG
GCGGCAGATTCTTCTCCATCTGCTTCTCTCTTGGCGACAAATGGCGGTGA
GCGCTCCACTAGCATTGATGTTGGCGGTCATGATGATGACTTGTAGCGCC
GAAACGGACATGCACGCTTCAGAGGCCCCAAGCCTCTACACACATGGCTG
CCGTTTTGTTTTTGTTTTTCGCGAGGGCTGGTGATTCGCCTCGTCGGTTG
TTGTTGCTGCCAAATGATTTGAGAGTCCGGGGACGATAGGCTTGGCCCTT
GCAACAGAAGGGAGTATGTCACGTTTGTTGGTATTCCAGGTGCTTTGACC
GAGAGGCCCAACAACCGTAAGGACTGAATCTTTGAACAGTCTCAATTGAC
CCCCCCAGCCAAATTTTCTCCAACATATTTAGCTATTTGAGCAAAATTTG
AACATTTTCTACTCTCGAGGGCAGCGTTGCGCTCTAACTTAGGCGGTATC
GTTTTTAATTTTGTTTTGGCCTGTCGATTCGTGGGTCCGTCGGTCCGTCG
TTGAAAAATTGAATATATGTCACACATGACGTTTTACTCATATGCGTAGC
TGCATTTCCTTTGCGTCCGATTGATTGACTAACTTCATTTAAAATATTTA
AACAATACTATGAGCCGATTATAATTTGCAATTATTCTCATTTTTTTATA
ATCCGAGATTTTGAAAACATTACTTTAAATATCAACTATTTAGTATAGGT
TTTATAGATATATTATTATATATCTATAAAATAGATGGGCGAAGTAATGT
TGGTTTAAAGAGTCAAAAGACGTAATACAATAAGATTAGTATTAATTTGC
GTATATATATATATATATATATAGATCAATAATAGAACTATTAATATAGT
AAAAAAGGATAAATACGTTTAGCTATAATTTTTAAGTTAGGATTAGTATA
ACCTTTAATTGTCACCCTTCCCTTGCTTTTCTTTTTTCCTGTCTGTCTGC
TATAATTACTTGTCGCTGACGGTGTCGTCGATCAACCTCGGTTGCTTCCG
CTGACTTGCACTCTGGTTTGGACACAATAGTAATGAGCAGGGCAGCAGCA
CGTGAGAGTGCTGGGGGGACTGCAGGCGCCCCCGACCGTGATGCTGATGG
TGCTGCCGGATTAGATTTGCCGCATGCGTCTGTTGGACATCCCCCCTGGG
CGGCTGGTGTTCTGTGAATCCGGCGTGAATCCGACGGCATATGGTGCAGT
TTTGATGGTGTTGTTTGGTCAGCTGACTGATGGGGGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig20470:1187..4027-

>mRNA_H-paniculata_contig20470.5306.1 ID=mRNA_H-paniculata_contig20470.5306.1|Name=mRNA_H-paniculata_contig20470.5306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig20470:1187..4027- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGATCACGTTGATTGCCCTTACTGCCGGGCCGACCTGAACGCCTG
GGGTTCGGGCAGGGTCGGTGAAGGGAGAGAAGCGCGGGGGCGCAATTGTC
CCAATCGCGCGGGCGCGGCTGCCGCCGATGCCGCCGCCGCCGCCGCCGCC
GCAGCAGCAGCAGCAGCAGCAGCAGCAACTACAGTAGCTATAGCAAGCAC
TGCGGCGGCAGATTCTTCTCCATCTGCTTCTCTCTTGGCGACAAATGGCG
ATGGCCGATCACGTTGATTGCCCTTACTGCCGGGCCGACCTGAACGCCTG
GGGTTCGGGCAGGGTCGGTGAAGGGAGAGAAGCGCGGGGGCGCAATTGTC
CCAATCGCGCGGGCGCGGCTGCCGCCGATGCCGCCGCCGCCGCCGCCGCC
GCAGCAGCAGCAGCAGCAGCAGCAGCAACTACAGTAGCTATAGCAAGCAC
TGCGGCGGCAGATTCTTCTCCATCTGCTTCTCTCTTGGCGACAAATGGCG
TAATGAGCAGGGCAGCAGCACGTGAGAGTGCTGGGGGGACTGCAGGCGCC
CCCGACCGTGATGCTGATGGTGCTGCCGGATTAGATTTGCCGCATGCGTC
TGTTGGACATCCCCCCTGGGCGGCTGGTGTTCTGTGATAATGAGCAGGGC
AGCAGCACGTGAGAGTGCTGGGGGGACTGCAGGCGCCCCCGACCGTGATG
CTGATGGTGCTGCCGGATTAGATTTGCCGCATGCGTCTGTTGGACATCCC
CCCTGGGCGGCTGGTGTTCTGTGA
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