mRNA_H-paniculata_contig20466.5304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20466.5304.1
Unique NamemRNA_H-paniculata_contig20466.5304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 8.370e-11
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:   46 GGEWRKALHLLLKMINNNIEPDTIAYNASISA 141
            GGEWRKALHLLLKMIN+ IEPDTIAYNASISA
Sbjct:  669 GGEWRKALHLLLKMINSGIEPDTIAYNASISA 700
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BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Match: A0A813G6D6_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6D6_POLGL)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-6
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 PNVVCYSSAITACEKGGEWRKALHLLLK-MINNNIEPDTIA 120
            PN VCY+SAI+ACEKGG+W+ AL LLLK M +  ++PD  +
Sbjct:    5 PNEVCYNSAISACEKGGQWQLALELLLKEMPSIRLQPDAFS 45
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BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Match: A0A7S1Z2D6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2D6_TRICV)

HSP 1 Score: 51.2 bits (121), Expect = 2.490e-6
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   25 AITACEKGGEWRKALHLLLKMINNNIEPDTIAYNAS 132
            AI+ACEKGG+W KAL LL  M N NI+PD I+Y+A+
Sbjct:    1 AISACEKGGKWEKALDLLQDMQNYNIKPDVISYSAA 36
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BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Match: A0A4D9DB36_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB36_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.960e-6
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 PNVVCYSSAITACEKGGEWRKALHLLLKMINNNIEPD 111
            PN+VCY+S ITA ++G +W+KALHLL+ M+++   PD
Sbjct:  591 PNLVCYTSVITALQQGQQWQKALHLLVHMLSSGPVPD 627
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BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Match: A0A812LNB7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LNB7_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 1.640e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   19 SSAITACEKGGEWRKALHLLLKMINNNIEPDTIAYNA 129
            ++ I+ACEK GEWR ALHLL KM    + PD I++NA
Sbjct:   43 AARISACEKSGEWRMALHLLSKMPTGRVVPDVISFNA 79
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BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Match: A0A7S2F2N3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F2N3_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.290e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 PNVVCYSSAITACEKGGEWRKALHLLLKMINNNIEPD 111
            PNV CY++A++AC KGG WRKA+ LL +M    +E D
Sbjct:  216 PNVDCYNAALSACTKGGHWRKAMGLLAQMKRQGVERD 252
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BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Match: A0A7S4V7M8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V7M8_9DINO)

HSP 1 Score: 47.8 bits (112), Expect = 5.850e-5
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   16 YSSAITACEKGGEWRKALHLLLKMINNNIEPDTIAYN 126
            +++AI+ACEKGGEW+KA+ LL +M  + ++PD I Y+
Sbjct:    2 FNAAISACEKGGEWQKAVALLAEMRRSALDPDAIVYS 38
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20466.5304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FIK7_ECTSI8.370e-1193.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813G6D6_POLGL1.870e-658.54Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A7S1Z2D6_TRICV2.490e-663.89Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A4D9DB36_9STRA8.960e-654.05Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A812LNB7_9DINO1.640e-556.76Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S2F2N3_9STRA2.290e-554.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4V7M8_9DINO5.850e-551.35Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20466contigH-paniculata_contig20466:291..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog2880.D7FIK7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.2434697-CDS-H-paniculata_contig20466:290..4311622929532.2434697-CDS-H-paniculata_contig20466:290..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20466 291..431 -
1691480901.5539927-CDS-H-paniculata_contig20466:290..4311691480901.5539927-CDS-H-paniculata_contig20466:290..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20466 291..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20466.5304.1prot_H-paniculata_contig20466.5304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20466 291..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20466.5304.1

>prot_H-paniculata_contig20466.5304.1 ID=prot_H-paniculata_contig20466.5304.1|Name=mRNA_H-paniculata_contig20466.5304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
PNVVCYSSAITACEKGGEWRKALHLLLKMINNNIEPDTIAYNASISA
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mRNA from alignment at H-paniculata_contig20466:291..431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20466.5304.1 ID=mRNA_H-paniculata_contig20466.5304.1|Name=mRNA_H-paniculata_contig20466.5304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig20466:291..431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAACGTGGTGTGCTACAGCTCCGCCATCACCGCGTGCGAAAAGGGTGG
CGAATGGCGTAAGGCCTTGCATCTGCTCTTGAAGATGATCAACAATAACA
TCGAGCCCGATACCATCGCCTATAATGCCTCGATTAGCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig20466:291..431-

>mRNA_H-paniculata_contig20466.5304.1 ID=mRNA_H-paniculata_contig20466.5304.1|Name=mRNA_H-paniculata_contig20466.5304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig20466:291..431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAACGTGGTGTGCTACAGCTCCGCCATCACCGCGTGCGAAAAGGGTGG
CGAATGGCGTAAGGCCTTGCATCTGCTCTTGAAGATGATCAACAATAACA
TCGAGCCCGATACCATCGCCTATAATGCCTCGATTAGCGCACCCAACGTG
GTGTGCTACAGCTCCGCCATCACCGCGTGCGAAAAGGGTGGCGAATGGCG
TAAGGCCTTGCATCTGCTCTTGAAGATGATCAACAATAACATCGAGCCCG
ATACCATCGCCTATAATGCCTCGATTAGCGCA
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