prot_H-paniculata_contig20361.5274.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20361.5274.1
Unique Nameprot_H-paniculata_contig20361.5274.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length250
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20361.5274.1 vs. uniprot
Match: A0A6H5JR08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR08_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.180e-8
Identity = 43/87 (49.43%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:   51 LDSPRNRGRAYDDRWKAPGHAESVLAKFVERLEEHRVA------------------------NHSPLDEEAAAALAEARANRGVAMA 113
            LDSPR+RGR YDDRWK PG AESVLA FVERLE   +A                          S  +  A+AALAEARANR  A+A
Sbjct:  974 LDSPRHRGRQYDDRWKMPGKAESVLASFVERLEHRGLAVDGGESGGXXXXXXXXXXXXXRDSTESYGETSASAALAEARANRHAAVA 1060
[Close]
BLAST of mRNA_H-paniculata_contig20361.5274.1 vs. uniprot
Match: D8LCX9_ECTSI (Villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 6.550e-7
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:   51 LDSPRNRGRAYDDRWKAPGHAESVLAKFVERLEEHR 86
            LDSPR+RGR YDDRWK PG AESVLA FVERLE HR
Sbjct: 1785 LDSPRHRGRQYDDRWKMPGKAESVLASFVERLE-HR 1819
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20361.5274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JR08_9PHAE3.180e-849.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCX9_ECTSI6.550e-783.33Villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20361contigH-paniculata_contig20361:2769..4212 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20361.5274.1mRNA_H-paniculata_contig20361.5274.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20361 2769..4212 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20361.5274.1 ID=prot_H-paniculata_contig20361.5274.1|Name=mRNA_H-paniculata_contig20361.5274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MGSPRAGGNGSRAAGGGGGGSHDAEISAASIAVSRYSLESAMSGGDGGED
LDSPRNRGRAYDDRWKAPGHAESVLAKFVERLEEHRVANHSPLDEEAAAA
LAEARANRGVAMAGIKSSPTARLHAPAAGSSGSATKAGKAGAIRPGQGDP
KDDEGEAQPLRYHKQAPALSKAASKKKKRTSTSGPVSGGGREPRKRSLGT
GKRPPGSTRMGGVAAPREIVGSRKTHRKRAVGDNGGGDAVGGGGGSGVGG
back to top