mRNA_H-paniculata_contig20243.5232.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20243.5232.1
Unique NamemRNA_H-paniculata_contig20243.5232.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20243.5232.1 vs. uniprot
Match: D8LSM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM8_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.510e-34
Identity = 115/283 (40.64%), Postives = 137/283 (48.41%), Query Frame = 1 
Query:    1 QIFIKAFPRTADGRQGLLENTGLVEMGDCLTAINGNPLPVATPLHEVMANIRAAKSPLTLRFARYPAAGRIGTPLP---PSSSLEDQEKFAPRHGESKSADRG-----------------------------GAYLGDGNGHLDASSGGGGGEGAKGDIM---------------AEDPELDAVMNSPLLLGLGERVAGIQKNNTLLLQTVERIATAAVTKRAGVEAVASAAVDLTATAGTL--PRTLKAXXXXXXXXXXXXXXXXXXXXXXAARERAVASRR 702
            +IFIKAFPR  +GR+G+LE+TGLVE+ DCLTAING  +  ++ LHEVMA+IRAA+SPL+LRFARYP       PL    PSSSL     F+P    S SA                                G ++G G                                    A DP+LDAV+NS L+LGLGERVA IQK N+ LLQ V+RI  AA  KR GVE VASAA  LTA    L   R L+                       AARERA  +RR
Sbjct:   34 KIFIKAFPRGPNGRRGILESTGLVELDDCLTAINGVSVDKSSALHEVMASIRAAESPLSLRFARYPPP-----PLQRCSPSSSLSSPSLFSP----SPSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRHIGAGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDAADPDLDAVLNSALVLGLGERVADIQKRNSRLLQEVDRIGRAAADKRQGVERVASAAASLTAAGSDLLPRRALRLLSAARQDAVALCEAMARLDELLAARERAQLARR 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20243.5232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM8_ECTSI1.510e-3440.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20243contigH-paniculata_contig20243:2164..2898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-09_002240.1
Exons1
Model size735
Cds size735
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.915747-CDS-H-paniculata_contig20243:2163..28981622929523.915747-CDS-H-paniculata_contig20243:2163..2898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20243 2164..2898 +
1691480897.8802319-CDS-H-paniculata_contig20243:2163..28981691480897.8802319-CDS-H-paniculata_contig20243:2163..2898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20243 2164..2898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20243.5232.1prot_H-paniculata_contig20243.5232.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20243 2164..2898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20243.5232.1

>prot_H-paniculata_contig20243.5232.1 ID=prot_H-paniculata_contig20243.5232.1|Name=mRNA_H-paniculata_contig20243.5232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
QIFIKAFPRTADGRQGLLENTGLVEMGDCLTAINGNPLPVATPLHEVMAN
IRAAKSPLTLRFARYPAAGRIGTPLPPSSSLEDQEKFAPRHGESKSADRG
GAYLGDGNGHLDASSGGGGGEGAKGDIMAEDPELDAVMNSPLLLGLGERV
AGIQKNNTLLLQTVERIATAAVTKRAGVEAVASAAVDLTATAGTLPRTLK
ALAAARVNATALCETMARLDESLAARERAVASRRKANDKDRAGK*
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mRNA from alignment at H-paniculata_contig20243:2164..2898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20243.5232.1 ID=mRNA_H-paniculata_contig20243.5232.1|Name=mRNA_H-paniculata_contig20243.5232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at H-paniculata_contig20243:2164..2898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCTTCATCAAAGCATTCCCGCGAACGGCAGACGGCCGTCAGGGTCT
GCTAGAGAACACGGGACTCGTAGAAATGGGAGATTGTCTCACAGCAATCA
ACGGCAACCCGCTGCCAGTAGCCACCCCGCTGCACGAGGTCATGGCGAAC
ATCCGCGCCGCAAAGTCTCCGCTTACGCTACGGTTCGCCCGATACCCTGC
AGCTGGTCGGATAGGCACCCCTCTTCCGCCGAGCTCGTCTCTCGAGGACC
AAGAGAAGTTTGCACCCCGTCATGGGGAAAGCAAAAGCGCCGACCGTGGC
GGCGCATACTTGGGGGATGGAAATGGACATCTCGACGCGAGCAGCGGCGG
CGGCGGTGGTGAGGGGGCAAAAGGGGATATCATGGCAGAAGACCCGGAAC
TAGATGCCGTCATGAACAGTCCATTACTGCTAGGCTTGGGGGAGCGCGTC
GCCGGCATCCAGAAGAACAACACGCTGCTTCTGCAGACGGTCGAACGGAT
CGCGACAGCTGCGGTCACGAAGCGCGCGGGCGTCGAAGCAGTTGCCTCTG
CTGCGGTTGACTTGACTGCGACGGCGGGGACCCTCCCGCGCACGTTGAAA
GCGTTGGCGGCCGCTCGAGTCAACGCAACTGCGCTCTGCGAGACGATGGC
GAGGTTGGATGAGTCGCTTGCTGCGAGAGAGCGTGCTGTGGCCAGCCGGC
GAAAAGCTAATGATAAGGATAGGGCGGGGAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20243:2164..2898+

>mRNA_H-paniculata_contig20243.5232.1 ID=mRNA_H-paniculata_contig20243.5232.1|Name=mRNA_H-paniculata_contig20243.5232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig20243:2164..2898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCTTCATCAAAGCATTCCCGCGAACGGCAGACGGCCGTCAGGGTCT
GCTAGAGAACACGGGACTCGTAGAAATGGGAGATTGTCTCACAGCAATCA
ACGGCAACCCGCTGCCAGTAGCCACCCCGCTGCACGAGGTCATGGCGAAC
ATCCGCGCCGCAAAGTCTCCGCTTACGCTACGGTTCGCCCGATACCCTGC
AGCTGGTCGGATAGGCACCCCTCTTCCGCCGAGCTCGTCTCTCGAGGACC
AAGAGAAGTTTGCACCCCGTCATGGGGAAAGCAAAAGCGCCGACCGTGGC
GGCGCATACTTGGGGGATGGAAATGGACATCTCGACGCGAGCAGCGGCGG
CGGCGGTGGTGAGGGGGCAAAAGGGGATATCATGGCAGAAGACCCGGAAC
TAGATGCCGTCATGAACAGTCCATTACTGCTAGGCTTGGGGGAGCGCGTC
GCCGGCATCCAGAAGAACAACACGCTGCTTCTGCAGACGGTCGAACGGAT
CGCGACAGCTGCGGTCACGAAGCGCGCGGGCGTCGAAGCAGTTGCCTCTG
CTGCGGTTGACTTGACTGCGACGGCGGGGACCCTCCCGCGCACGTTGAAA
GCGTTGGCGGCCGCTCGAGTCAACGCAACTGCGCTCTGCGAGACGATGGC
GAGGTTGGATGAGTCGCTTGCTGCGAGAGAGCGTGCTGTGGCCAGCCGGC
GAAAAGCTAATGATAAGGATAGGGCGGGGAAGTAGCAGATCTTCATCAAA
GCATTCCCGCGAACGGCAGACGGCCGTCAGGGTCTGCTAGAGAACACGGG
ACTCGTAGAAATGGGAGATTGTCTCACAGCAATCAACGGCAACCCGCTGC
CAGTAGCCACCCCGCTGCACGAGGTCATGGCGAACATCCGCGCCGCAAAG
TCTCCGCTTACGCTACGGTTCGCCCGATACCCTGCAGCTGGTCGGATAGG
CACCCCTCTTCCGCCGAGCTCGTCTCTCGAGGACCAAGAGAAGTTTGCAC
CCCGTCATGGGGAAAGCAAAAGCGCCGACCGTGGCGGCGCATACTTGGGG
GATGGAAATGGACATCTCGACGCGAGCAGCGGCGGCGGCGGTGGTGAGGG
GGCAAAAGGGGATATCATGGCAGAAGACCCGGAACTAGATGCCGTCATGA
ACAGTCCATTACTGCTAGGCTTGGGGGAGCGCGTCGCCGGCATCCAGAAG
AACAACACGCTGCTTCTGCAGACGGTCGAACGGATCGCGACAGCTGCGGT
CACGAAGCGCGCGGGCGTCGAAGCAGTTGCCTCTGCTGCGGTTGACTTGA
CTGCGACGGCGGGGACCCTCCCGCGCACGTTGAAAGCGTTGGCGGCCGCT
CGAGTCAACGCAACTGCGCTCTGCGAGACGATGGCGAGGTTGGATGAGTC
GCTTGCTGCGAGAGAGCGTGCTGTGGCCAGCCGGCGAAAAGCTAATGATA
AGGATAGGGCGGGGAAGTAG
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