mRNA_H-paniculata_contig20235.5228.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20235.5228.1
Unique NamemRNA_H-paniculata_contig20235.5228.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20235.5228.1 vs. uniprot
Match: A0A6H5KAV0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.840e-41
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:    1 LPTVTGHPVRSLPPDGTRYVTMYPTPATFDPAQLVPGNFIAPHEARLMEVFSLGRTIRFLAILDGIILLFNCAYFPVLYLLL-WAPLAGWMAGTRFSTAWTYAYLCYYVMRLSVDLAYVLTG 363
            LP   G PV+   P GT+YV ++P    FDPA L    F+APHEA+LME  SL +TIR+LA+ DG+IL+ NC YFP+L LLL W PL+GWMAGTR+STAWTYAY CYY++RLS  L+YV  G
Sbjct:   55 LPAARGMPVQPGAP-GTQYVAIFPPSVPFDPADLGVAGFMAPHEAKLMEASSLAKTIRWLAVFDGLILVINCGYFPMLLLLLLWGPLSGWMAGTRYSTAWTYAYCCYYLLRLSTYLSYVFEG 175
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BLAST of mRNA_H-paniculata_contig20235.5228.1 vs. uniprot
Match: A0A6V1TFA5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TFA5_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 2.760e-18
Identity = 37/91 (40.66%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   91 PAQLVPGNFIAPHEARLMEVFSLGRTIRFLAILDGIILLFNCAYFPVLYLLLWAPLAGWMAGTRFSTAWTYAYLCYYVMRLSVDLAYVLTG 363
            P     G  +  HE RL+E +SLGR +R +A++DG+ILLF+C  FPV ++L+W PLAG++  + F  ++   Y  YYV++++ D+ ++L G
Sbjct:   86 PGPQAEGMALGDHERRLLETYSLGRGVRVIALIDGMILLFDCLLFPVFFVLMWGPLAGYLGSSYFRFSFVTCYFLYYVLKMAADIIFILYG 176
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BLAST of mRNA_H-paniculata_contig20235.5228.1 vs. uniprot
Match: A0A7S2Y004_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y004_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.180e-17
Identity = 35/82 (42.68%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:  118 IAPHEARLMEVFSLGRTIRFLAILDGIILLFNCAYFPVLYLLLWAPLAGWMAGTRFSTAWTYAYLCYYVMRLSVDLAYVLTG 363
            +   E R++E FSLGR IR +A+LD +ILLF+C  FP+ ++ +W P+ G+ AG  F   ++Y YL YY ++++ D+A++L G
Sbjct:   82 LGAQEQRILETFSLGRGIRCIALLDSVILLFDCLLFPIFFVFVWGPICGYFAGQDFRAFYSYLYLLYYAVKITADIAFILFG 163
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BLAST of mRNA_H-paniculata_contig20235.5228.1 vs. uniprot
Match: D8LQC7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.070e-6
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   91 PAQLVPGNFIAPHEARLMEVFSLGRTIRFLAILDGIILLFNCAYFPVLYLLLWAPLAGWMAGTRFSTAWTYAYLCYYVMRLSVDLAYVLTG 363
            PA   PG    P E+ LM      R +R LAILD II+L   + F  L L++W P+AG++A   F     + +L YY +R+S D+ ++L+G
Sbjct:   77 PAPSFPGT-PRPSES-LMACHRYSRVVRVLAILDAIIVLCGASAFTPLILMIWGPIAGYLAS-NFRLRAAFTFLFYYGLRISWDIGWILSG 164
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BLAST of mRNA_H-paniculata_contig20235.5228.1 vs. uniprot
Match: A0A836CJB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB9_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.030e-5
Identity = 31/101 (30.69%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:   67 YPTPATFDPAQLVPGNFIAPH--EARLMEVFSLGRTIRFLAILDGIILLFNCAYF--PVLYLLL----WAPLAGWMAGTRFSTAWTYAYLCYYVMRLSVDL 345
            +PTP  F   Q V    +     + RLME +SL R+I+ L+++D I+L FN  +F  P+ ++++    W P  G+ +   +       YL YYV+++  D+
Sbjct:   22 FPTP-DFPSVQAVVAGVVEGQGDDERLMETYSLARSIKVLSMIDAILLTFNAVFFWGPLFFIVMLALAWGPACGYYSAKHYHIHSARGYLVYYVIKVLTDV 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20235.5228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAV0_9PHAE2.840e-4159.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1TFA5_HETAK2.760e-1840.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y004_9STRA1.180e-1742.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LQC7_ECTSI2.070e-638.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJB9_9STRA9.030e-530.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20235contigH-paniculata_contig20235:3012..4544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005480.1
Exons3
Model size366
Cds size366
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20235.5228.1prot_H-paniculata_contig20235.5228.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20235 3012..4544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.4122357-CDS-H-paniculata_contig20235:3011..31141622929523.4122357-CDS-H-paniculata_contig20235:3011..3114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20235 3012..3114 +
1691480897.7098296-CDS-H-paniculata_contig20235:3011..31141691480897.7098296-CDS-H-paniculata_contig20235:3011..3114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20235 3012..3114 +
1622929523.4264765-CDS-H-paniculata_contig20235:3853..39991622929523.4264765-CDS-H-paniculata_contig20235:3853..3999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20235 3854..3999 +
1691480897.7183409-CDS-H-paniculata_contig20235:3853..39991691480897.7183409-CDS-H-paniculata_contig20235:3853..3999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20235 3854..3999 +
1622929523.4468057-CDS-H-paniculata_contig20235:4427..45441622929523.4468057-CDS-H-paniculata_contig20235:4427..4544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20235 4428..4544 +
1691480897.7275567-CDS-H-paniculata_contig20235:4427..45441691480897.7275567-CDS-H-paniculata_contig20235:4427..4544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20235 4428..4544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20235.5228.1

>prot_H-paniculata_contig20235.5228.1 ID=prot_H-paniculata_contig20235.5228.1|Name=mRNA_H-paniculata_contig20235.5228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
LPTVTGHPVRSLPPDGTRYVTMYPTPATFDPAQLVPGNFIAPHEARLMEV
FSLGRTIRFLAILDGIILLFNCAYFPVLYLLLWAPLAGWMAGTRFSTAWT
YAYLCYYVMRLSVDLAYVLTG*
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mRNA from alignment at H-paniculata_contig20235:3012..4544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20235.5228.1 ID=mRNA_H-paniculata_contig20235.5228.1|Name=mRNA_H-paniculata_contig20235.5228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1533bp|location=Sequence derived from alignment at H-paniculata_contig20235:3012..4544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCGACGGTTACAGGACACCCAGTGAGGTCACTTCCACCTGATGGGAC
ACGATACGTGACAATGTACCCCACACCTGCTACGTTTGACCCAGCACAGC
TTGGTGAGCAGCCGTAAAAAAGCGACGCCCTTGTGGCAGATATGCATGTA
TCGATGTATATCACCCCCCAAATGGGGTGTTGTGGCTCCATTGTTTTTAC
TGGTTTATGTTGGGATTTCTTTTTGAGATAAACACACCTGTTGAGTGTCG
ACCAGTTTTTTTTTTCATTTAGTCGATGGGAATAGTCACATCAACTTGTT
GCTTTCTAGTGCTCAGTTTGTTTTTTCTTAAAAGATGGCTAGTTTGGATG
TCTCTCGGGGTTTTTATTTGAGGAGTCAATGCAAATAAAGCTGCAGCGCT
TTTTTTTTTTTTTTGCAACACACAAAGTTGAAGTTTTTTAAAGAAATTAA
TTTCGGAGTGTCGCCCTTTTTTTTTTTCGTTTAATTAGTTGATGTAAAGA
GTTGCTAGAAAGTGGTTATTTATTTTTGGGGGGAAGTTCGTGGCTCCATA
TTTTGTAGTTTTTCTCAATTACTGTAGTCAATGAAATAGCCATCGAACGT
AATTGCCAAAAATTCTTGATTTTTTATTTTTGGAGAAGTAATGGCAGGAT
ATCTCTCACACTGTGTTATATTTGTCGAACGTTAAGATTCACAATAATTT
CTTGCCACAAAATCATATATATATATATATATATATGTATATTGCTATAG
TATACTTTCTTTTCAAGAGGAAGTAACAGTAAAAACGCGTATCTGTTCCC
TCTATGTCTTTCCCGCTGCCCTCCTGTTGATATCCGCAGGAGTACCTGGA
AATTTCATAGCGCCGCACGAAGCGCGGCTGATGGAGGTTTTCTCGCTTGG
CAGAACGATTCGGTTTCTGGCAATCCTGGATGGGATCATTCTCCTCTTCA
ACTGCGCATACTTTCCCGTGTTGTATTTGCTTCTATGGGTGAGTGTACGC
AAGCCTCTACGAGGTTACCCCCAATTTTTGAGCTTCGGACTGCGGATCCC
GATCAAATGACGTGCTAATGTGCGACGACAAAAACATGTGCGCGCTTTTT
TTTCACCTGTTGCCCAGCGGCAAATTCCAGGACATATGTGTCGATTTTTA
TAAGTTACGTGGGAAACGTTCGCTCGAAGACATATATCATATCGATGTGC
TCAAATACTGATGATCTACGATGATCTATCACCTGGTTCAGAACGAATTT
GCCCATTCCAAATGTTTTCAGAGCACCGAAGATCGTATATTATGTAGTGC
GCTGGATCATGATAGAAAGGAGGCGAGCCATTTAAAAGAAAAAAAAAAAG
GATAATGACCTGGTTTCGTGATGTCGGATGGACGTGTCGTTATTTTTTTT
GCTTTTTTTATGGAAGGCGCCGCTTGCAGGGTGGATGGCAGGAACCCGAT
TCAGCACCGCCTGGACTTACGCCTATCTGTGCTACTACGTTATGCGCCTC
AGCGTGGACTTGGCGTATGTTTTGACCGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20235:3012..4544+

>mRNA_H-paniculata_contig20235.5228.1 ID=mRNA_H-paniculata_contig20235.5228.1|Name=mRNA_H-paniculata_contig20235.5228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig20235:3012..4544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCGACGGTTACAGGACACCCAGTGAGGTCACTTCCACCTGATGGGAC
ACGATACGTGACAATGTACCCCACACCTGCTACGTTTGACCCAGCACAGC
TTGTTACCGACGGTTACAGGACACCCAGTGAGGTCACTTCCACCTGATGG
GACACGATACGTGACAATGTACCCCACACCTGCTACGTTTGACCCAGCAC
AGCTTGTACCTGGAAATTTCATAGCGCCGCACGAAGCGCGGCTGATGGAG
GTTTTCTCGCTTGGCAGAACGATTCGGTTTCTGGCAATCCTGGATGGGAT
CATTCTCCTCTTCAACTGCGCATACTTTCCCGTGTTGTATTTGCTTCTAT
GGTACCTGGAAATTTCATAGCGCCGCACGAAGCGCGGCTGATGGAGGTTT
TCTCGCTTGGCAGAACGATTCGGTTTCTGGCAATCCTGGATGGGATCATT
CTCCTCTTCAACTGCGCATACTTTCCCGTGTTGTATTTGCTTCTATGGGC
GCCGCTTGCAGGGTGGATGGCAGGAACCCGATTCAGCACCGCCTGGACTT
ACGCCTATCTGTGCTACTACGTTATGCGCCTCAGCGTGGACTTGGCGTAT
GTTTTGACCGGGTGAGCGCCGCTTGCAGGGTGGATGGCAGGAACCCGATT
CAGCACCGCCTGGACTTACGCCTATCTGTGCTACTACGTTATGCGCCTCA
GCGTGGACTTGGCGTATGTTTTGACCGGGTGA
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