mRNA_H-paniculata_contig2019.5204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2019.5204.1
Unique NamemRNA_H-paniculata_contig2019.5204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2019.5204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2019contigH-paniculata_contig2019:18634..19588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2019.5204.1prot_H-paniculata_contig2019.5204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2019 18634..19439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929519.4712777-CDS-H-paniculata_contig2019:18633..187491622929519.4712777-CDS-H-paniculata_contig2019:18633..18749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 18634..18749 -
1691480896.2224805-CDS-H-paniculata_contig2019:18633..187491691480896.2224805-CDS-H-paniculata_contig2019:18633..18749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 18634..18749 -
1622929519.4842327-CDS-H-paniculata_contig2019:19354..194391622929519.4842327-CDS-H-paniculata_contig2019:19354..19439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 19355..19439 -
1691480896.23053-CDS-H-paniculata_contig2019:19354..194391691480896.23053-CDS-H-paniculata_contig2019:19354..19439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 19355..19439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929519.4968185-UTR-H-paniculata_contig2019:19439..195881622929519.4968185-UTR-H-paniculata_contig2019:19439..19588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2019 19440..19588 -
1691480896.2385027-UTR-H-paniculata_contig2019:19439..195881691480896.2385027-UTR-H-paniculata_contig2019:19439..19588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2019 19440..19588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2019.5204.1

>prot_H-paniculata_contig2019.5204.1 ID=prot_H-paniculata_contig2019.5204.1|Name=mRNA_H-paniculata_contig2019.5204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MEALSRKAEQEKFAELEAMLADVTQDITDEDDEDSSSISFSSDPRTPTTL
ARASPPIMTINQREDFP
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mRNA from alignment at H-paniculata_contig2019:18634..19588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2019.5204.1 ID=mRNA_H-paniculata_contig2019.5204.1|Name=mRNA_H-paniculata_contig2019.5204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=955bp|location=Sequence derived from alignment at H-paniculata_contig2019:18634..19588- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCAACCTCACAGCAGTTTTGGTGACTTACCTTTTCGAACAGTGATTTT
TCGCAGAAGCACCTAGCCACAGCTGGAAAACAGAGTGAACACTCTCTGAA
AACATTGAGTGCGTTCGGAGACGATCGTACTTGGCTGTGCGTGAACGAGA
TGGAGGCACTGTCCAGGAAGGCCGAACAAGAGAAGTTCGCCGAGCTGGAG
GCAATGCTGGCAGACGTAACGCAAGATATCACAGGTGCGTTTTCAAATTG
CTTGGGACCGTCGGTTCGGCTGTTCTATTGTTGGTAGTGCCCGAATAGGT
TACAAGGACGTGCTGCGTCAATAACATCGCTGATGCTATCGGTCGATCGT
CGGTGGAAGTCTTTGCCCTAACAGGGTGTTTTGATCACATGGGTAGTGTT
GCTGCCTGCATGCTAAGTCTTCCTTTACCCGAAGAGTTGAAATCGTTCGC
GCCATCGGAGAGCCTAAACAGCCATACGCATCCGTCTGCTCTACTTGACA
AAACAGCCGCAGGCGTCTGTCTGTCAAGTCAACCTTGCGGTGTTACAGAG
GCTGAACTCGCGCGCGCGCGAGCGAGAGAGAGGGAGAGGGAGAGAGTGCG
CGCGCCGCAACTGTGTACTGCACCAACCCAATTAACGCTGCTATATTTAC
TGTTTTTTTACGAACCCCACATAGCCGTTTTTCGAAGAAGAGTACTTTTC
AAACACAACCTAAAAATCATGCCCTGTGGGCCCTTTGCTCAAATTCAAAC
CCAAAACCAACCTATTGTGCACATACACACAACATATTGAACGTACTACG
TACTGCTGTTGGACATTTTGTCATGAAAAACAAATACAGACGAGGACGAC
GAGGACAGCAGCTCGATATCGTTCTCATCAGATCCACGTACTCCAACAAC
ACTCGCCCGAGCGTCACCTCCAATAATGACGATAAATCAGCGCGAGGATT
TCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2019:18634..19588-

>mRNA_H-paniculata_contig2019.5204.1 ID=mRNA_H-paniculata_contig2019.5204.1|Name=mRNA_H-paniculata_contig2019.5204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig2019:18634..19588- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCACTGTCCAGGAAGGCCGAACAAGAGAAGTTCGCCGAGCTGGA
GGCAATGCTGGCAGACGTAACGCAAGATATCACAGATGGAGGCACTGTCC
AGGAAGGCCGAACAAGAGAAGTTCGCCGAGCTGGAGGCAATGCTGGCAGA
CGTAACGCAAGATATCACAGACGAGGACGACGAGGACAGCAGCTCGATAT
CGTTCTCATCAGATCCACGTACTCCAACAACACTCGCCCGAGCGTCACCT
CCAATAATGACGATAAATCAGCGCGAGGATTTCCCCACGAGGACGACGAG
GACAGCAGCTCGATATCGTTCTCATCAGATCCACGTACTCCAACAACACT
CGCCCGAGCGTCACCTCCAATAATGACGATAAATCAGCGCGAGGATTTCC
CC
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