mRNA_H-paniculata_contig2019.5203.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2019.5203.1
Unique NamemRNA_H-paniculata_contig2019.5203.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2019.5203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2019contigH-paniculata_contig2019:8884..9772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size890
Cds size810
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929519.1603-CDS-H-paniculata_contig2019:8883..96931622929519.1603-CDS-H-paniculata_contig2019:8883..9693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 8884..9693 +
1691480896.0892751-CDS-H-paniculata_contig2019:8883..96931691480896.0892751-CDS-H-paniculata_contig2019:8883..9693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 8884..9693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929519.1748903-UTR-H-paniculata_contig2019:9693..97721622929519.1748903-UTR-H-paniculata_contig2019:9693..9772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2019 9694..9772 +
1691480896.0989268-UTR-H-paniculata_contig2019:9693..97721691480896.0989268-UTR-H-paniculata_contig2019:9693..9772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2019 9694..9772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2019.5203.1prot_H-paniculata_contig2019.5203.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2019 8884..9693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2019.5203.1

>prot_H-paniculata_contig2019.5203.1 ID=prot_H-paniculata_contig2019.5203.1|Name=mRNA_H-paniculata_contig2019.5203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
FTRSSVSLSAPASRLHLTTACSAATAATACPSLNFCRSPPSLFFERARCE
LRTGLLLSQVGAPSLITLRVGAFSASASTPRRRALVLLPFSDDRAARRST
LLLSGVNTTAPVPCPSFSSTSSFFSVCEPLFVVIFAGADVAGTLSSGGGG
KNNGAVCVCVCVAIVVLVCLSSSRANRTPRRAESTLSRRASNARPATTVW
SFGLPSSDATGAAAVPASSAPASRAAPSLGAVSDSTITGVHANPTESLPS
FALPGSSRRRCCCPTLLSR*
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mRNA from alignment at H-paniculata_contig2019:8884..9772+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2019.5203.1 ID=mRNA_H-paniculata_contig2019.5203.1|Name=mRNA_H-paniculata_contig2019.5203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=889bp|location=Sequence derived from alignment at H-paniculata_contig2019:8884..9772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCACCCGCTCCAGCGTTTCGCTCAGCGCCCCGGCCTCCCGCCTCCACTT
GACCACAGCATGCTCCGCTGCCACCGCTGCCACCGCCTGCCCGTCCCTCA
ACTTCTGCCGGTCCCCTCCTTCCCTCTTCTTCGAGCGCGCCCGATGCGAG
CTCCGCACCGGGCTTCTACTGTCCCAGGTCGGAGCCCCCAGCCTCATTAC
GCTTCGGGTCGGTGCATTCTCAGCATCCGCCTCCACACCCCGCCGTCGGG
CCCTCGTCTTGCTCCCCTTCTCCGATGATCGCGCTGCCCGGCGAAGCACC
TTGCTGCTGTCGGGGGTCAATACTACTGCTCCGGTACCCTGCCCTTCCTT
CTCCTCCACCTCTTCCTTCTTCTCTGTTTGCGAGCCTTTGTTTGTGGTGA
TTTTTGCAGGAGCTGATGTCGCAGGAACCCTATCTTCTGGTGGCGGTGGT
AAAAACAACGGCGCTGTCTGCGTCTGCGTTTGCGTTGCCATAGTTGTCTT
GGTATGCCTCTCCTCTTCGAGGGCCAATCGTACGCCGCGAAGGGCTGAGT
CAACCCTCTCCCGCAGAGCCTCCAACGCGCGACCTGCCACCACCGTGTGG
TCGTTCGGCTTACCCTCCTCCGATGCCACCGGAGCCGCCGCCGTTCCCGC
ATCTTCAGCTCCTGCGTCCAGAGCAGCACCCTCGTTAGGCGCAGTGTCCG
ACTCGACCATCACAGGTGTCCACGCCAACCCTACAGAATCGCTGCCGTCT
TTTGCGTTGCCGGGTAGTAGCCGCCGCCGCTGCTGCTGCCCTACCTTGTT
GTCGAGATGATGGCGAAGAGACAAAAAAGCTGCGTCGACTATTCGTGTGG
CTGCAACGAATGCTTCGGCCCAGGCAGCCATGGCTTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2019:8884..9772+

>mRNA_H-paniculata_contig2019.5203.1 ID=mRNA_H-paniculata_contig2019.5203.1|Name=mRNA_H-paniculata_contig2019.5203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at H-paniculata_contig2019:8884..9772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCACCCGCTCCAGCGTTTCGCTCAGCGCCCCGGCCTCCCGCCTCCACTT
GACCACAGCATGCTCCGCTGCCACCGCTGCCACCGCCTGCCCGTCCCTCA
ACTTCTGCCGGTCCCCTCCTTCCCTCTTCTTCGAGCGCGCCCGATGCGAG
CTCCGCACCGGGCTTCTACTGTCCCAGGTCGGAGCCCCCAGCCTCATTAC
GCTTCGGGTCGGTGCATTCTCAGCATCCGCCTCCACACCCCGCCGTCGGG
CCCTCGTCTTGCTCCCCTTCTCCGATGATCGCGCTGCCCGGCGAAGCACC
TTGCTGCTGTCGGGGGTCAATACTACTGCTCCGGTACCCTGCCCTTCCTT
CTCCTCCACCTCTTCCTTCTTCTCTGTTTGCGAGCCTTTGTTTGTGGTGA
TTTTTGCAGGAGCTGATGTCGCAGGAACCCTATCTTCTGGTGGCGGTGGT
AAAAACAACGGCGCTGTCTGCGTCTGCGTTTGCGTTGCCATAGTTGTCTT
GGTATGCCTCTCCTCTTCGAGGGCCAATCGTACGCCGCGAAGGGCTGAGT
CAACCCTCTCCCGCAGAGCCTCCAACGCGCGACCTGCCACCACCGTGTGG
TCGTTCGGCTTACCCTCCTCCGATGCCACCGGAGCCGCCGCCGTTCCCGC
ATCTTCAGCTCCTGCGTCCAGAGCAGCACCCTCGTTAGGCGCAGTGTCCG
ACTCGACCATCACAGGTGTCCACGCCAACCCTACAGAATCGCTGCCGTCT
TTTGCGTTGCCGGGTAGTAGCCGCCGCCGCTGCTGCTGCCCTACCTTGTT
GTCGAGATGATTCACCCGCTCCAGCGTTTCGCTCAGCGCCCCGGCCTCCC
GCCTCCACTTGACCACAGCATGCTCCGCTGCCACCGCTGCCACCGCCTGC
CCGTCCCTCAACTTCTGCCGGTCCCCTCCTTCCCTCTTCTTCGAGCGCGC
CCGATGCGAGCTCCGCACCGGGCTTCTACTGTCCCAGGTCGGAGCCCCCA
GCCTCATTACGCTTCGGGTCGGTGCATTCTCAGCATCCGCCTCCACACCC
CGCCGTCGGGCCCTCGTCTTGCTCCCCTTCTCCGATGATCGCGCTGCCCG
GCGAAGCACCTTGCTGCTGTCGGGGGTCAATACTACTGCTCCGGTACCCT
GCCCTTCCTTCTCCTCCACCTCTTCCTTCTTCTCTGTTTGCGAGCCTTTG
TTTGTGGTGATTTTTGCAGGAGCTGATGTCGCAGGAACCCTATCTTCTGG
TGGCGGTGGTAAAAACAACGGCGCTGTCTGCGTCTGCGTTTGCGTTGCCA
TAGTTGTCTTGGTATGCCTCTCCTCTTCGAGGGCCAATCGTACGCCGCGA
AGGGCTGAGTCAACCCTCTCCCGCAGAGCCTCCAACGCGCGACCTGCCAC
CACCGTGTGGTCGTTCGGCTTACCCTCCTCCGATGCCACCGGAGCCGCCG
CCGTTCCCGCATCTTCAGCTCCTGCGTCCAGAGCAGCACCCTCGTTAGGC
GCAGTGTCCGACTCGACCATCACAGGTGTCCACGCCAACCCTACAGAATC
GCTGCCGTCTTTTGCGTTGCCGGGTAGTAGCCGCCGCCGCTGCTGCTGCC
CTACCTTGTTGTCGAGATGA
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