mRNA_H-paniculata_contig20175.5196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20175.5196.1
Unique NamemRNA_H-paniculata_contig20175.5196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20175.5196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20175contigH-paniculata_contig20175:1542..2246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size706
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.567931-UTR-H-paniculata_contig20175:1541..18381622929518.567931-UTR-H-paniculata_contig20175:1541..1838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20175 1542..1838 +
1691480895.913396-UTR-H-paniculata_contig20175:1541..18381691480895.913396-UTR-H-paniculata_contig20175:1541..1838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20175 1542..1838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.5837922-CDS-H-paniculata_contig20175:1838..22461622929518.5837922-CDS-H-paniculata_contig20175:1838..2246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20175 1839..2246 +
1691480895.9255118-CDS-H-paniculata_contig20175:1838..22461691480895.9255118-CDS-H-paniculata_contig20175:1838..2246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20175 1839..2246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20175.5196.1prot_H-paniculata_contig20175.5196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20175 1839..2246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20175.5196.1

>prot_H-paniculata_contig20175.5196.1 ID=prot_H-paniculata_contig20175.5196.1|Name=mRNA_H-paniculata_contig20175.5196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MLLLITARSGNIERGQRKDVTSPPPPPSPLLTDPSPAECFRKLTAGAEMQ
RRPARILCLRASSSYCVGNAGSVGDDGVLRSVEEVGDMSPVGYECVSCAT
DFVGVVFLDVCQRKENQHQYIHIEILLYVALMLLVL
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mRNA from alignment at H-paniculata_contig20175:1542..2246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20175.5196.1 ID=mRNA_H-paniculata_contig20175.5196.1|Name=mRNA_H-paniculata_contig20175.5196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=705bp|location=Sequence derived from alignment at H-paniculata_contig20175:1542..2246+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCACCCTGTGTCGTTTCACCCCGTTGTCCCGTGCCACTGCATTGCTG
TTCCGTTTCAACTTGTTCGGTTTGAGTAACACCGGGGGTACCGCGGCCGC
TTGCCTCGCTATCGAACAAAGCCAAGCTGTGCTGCTGCGCAAAAGCAGAA
GAAGCAGTGGGCAAACCTCGGAGTAGCCCAGCCGACGAGGATGTCCTTAA
CAAACGATCCCCCAAACAACCACCAGACTTGTGGACAAACTGGCTACTGG
ATTGGGATCTACCCGGGTTACCACCGAATCCAATTGGGTTCCTACTAATG
TTATTGCTGATAACCGCGCGGTCGGGTAATATTGAGCGGGGGCAGCGGAA
GGATGTTACTTCGCCGCCGCCGCCGCCATCGCCGCTGCTCACTGACCCCA
GCCCAGCAGAATGTTTTAGGAAACTAACTGCTGGCGCAGAGATGCAGAGG
CGACCGGCGCGCATCCTCTGTCTCCGTGCTTCTTCGTCGTACTGCGTGGG
AAACGCAGGATCGGTTGGGGATGATGGCGTTTTGAGAAGCGTAGAAGAGG
TCGGCGACATGTCGCCGGTTGGGTACGAATGTGTTTCATGCGCGACGGAT
TTTGTGGGTGTTGTGTTTTTAGATGTGTGTCAGCGTAAGGAAAATCAACA
TCAATATATACATATAGAAATACTACTCTATGTAGCTCTTATGTTGCTTG
TTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20175:1542..2246+

>mRNA_H-paniculata_contig20175.5196.1 ID=mRNA_H-paniculata_contig20175.5196.1|Name=mRNA_H-paniculata_contig20175.5196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig20175:1542..2246+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTATTGCTGATAACCGCGCGGTCGGGTAATATTGAGCGGGGGCAGCG
GAAGGATGTTACTTCGCCGCCGCCGCCGCCATCGCCGCTGCTCACTGACC
CCAGCCCAGCAGAATGTTTTAGGAAACTAACTGCTGGCGCAGAGATGCAG
AGGCGACCGGCGCGCATCCTCTGTCTCCGTGCTTCTTCGTCGTACTGCGT
GGGAAACGCAGGATCGGTTGGGGATGATGGCGTTTTGAGAAGCGTAGAAG
AGGTCGGCGACATGTCGCCGGTTGGGTACGAATGTGTTTCATGCGCGACG
GATTTTGTGGGTGTTGTGTTTTTAGATGTGTGTCAGCGTAAGGAAAATCA
ACATCAATATATACATATAGAAATACTACTCTATGTAGCTCTTATGTTGC
TTGTTCTGATGTTATTGCTGATAACCGCGCGGTCGGGTAATATTGAGCGG
GGGCAGCGGAAGGATGTTACTTCGCCGCCGCCGCCGCCATCGCCGCTGCT
CACTGACCCCAGCCCAGCAGAATGTTTTAGGAAACTAACTGCTGGCGCAG
AGATGCAGAGGCGACCGGCGCGCATCCTCTGTCTCCGTGCTTCTTCGTCG
TACTGCGTGGGAAACGCAGGATCGGTTGGGGATGATGGCGTTTTGAGAAG
CGTAGAAGAGGTCGGCGACATGTCGCCGGTTGGGTACGAATGTGTTTCAT
GCGCGACGGATTTTGTGGGTGTTGTGTTTTTAGATGTGTGTCAGCGTAAG
GAAAATCAACATCAATATATACATATAGAAATACTACTCTATGTAGCTCT
TATGTTGCTTGTTCTG
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