mRNA_H-paniculata_contig2015.5191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2015.5191.1
Unique NamemRNA_H-paniculata_contig2015.5191.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2015.5191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2015contigH-paniculata_contig2015:15816..16518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size703
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2015.5191.1prot_H-paniculata_contig2015.5191.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2015 15980..16348 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.8538182-UTR-H-paniculata_contig2015:15815..159791622929517.8538182-UTR-H-paniculata_contig2015:15815..15979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2015 15816..15979 +
1691480895.6150706-UTR-H-paniculata_contig2015:15815..159791691480895.6150706-UTR-H-paniculata_contig2015:15815..15979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2015 15816..15979 +
1622929517.9402199-UTR-H-paniculata_contig2015:16348..165181622929517.9402199-UTR-H-paniculata_contig2015:16348..16518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2015 16349..16518 +
1691480895.6335924-UTR-H-paniculata_contig2015:16348..165181691480895.6335924-UTR-H-paniculata_contig2015:16348..16518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2015 16349..16518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.8945582-CDS-H-paniculata_contig2015:15979..163481622929517.8945582-CDS-H-paniculata_contig2015:15979..16348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2015 15980..16348 +
1691480895.6253548-CDS-H-paniculata_contig2015:15979..163481691480895.6253548-CDS-H-paniculata_contig2015:15979..16348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2015 15980..16348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2015.5191.1

>prot_H-paniculata_contig2015.5191.1 ID=prot_H-paniculata_contig2015.5191.1|Name=mRNA_H-paniculata_contig2015.5191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MYPSLLLLLLVIGLGAARGFGVGLAPNCGAGVVAQHGQHVVGGFSANRVG
RDTDAVSVMMSASQFNRDGGANEHMDKRDDQREDDPVVSIAHGNVWVVIS
LTFLVVRVNSLNGRYLGTSCLG*
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mRNA from alignment at H-paniculata_contig2015:15816..16518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2015.5191.1 ID=mRNA_H-paniculata_contig2015.5191.1|Name=mRNA_H-paniculata_contig2015.5191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at H-paniculata_contig2015:15816..16518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTCTGCCCTGCCTCTACAACACTTGTGTTCCTTCCCCGGGCGAAATA
GTGCATAGCATTCAGAGATCAGTCACTCCAGCGATCTATCCACCGCTGTT
TTTCGATTCCAATTCCTCCCCTTATTTCTGGAACATACATTATTCACTCC
AAGGGCACAATATCATGTACCCAAGCCTGCTGCTATTGCTGCTGGTCATC
GGCCTGGGCGCCGCTCGAGGCTTCGGGGTGGGGCTTGCGCCGAACTGTGG
GGCCGGAGTTGTAGCACAGCATGGACAGCATGTAGTAGGTGGGTTTAGCG
CTAACAGAGTCGGGAGAGACACCGATGCAGTTTCAGTGATGATGTCCGCG
TCGCAGTTCAACCGGGACGGTGGCGCCAACGAGCACATGGACAAACGGGA
CGATCAACGAGAAGACGACCCCGTTGTAAGTATTGCTCACGGCAATGTCT
GGGTTGTAATATCCCTTACTTTTCTTGTGGTGAGGGTTAACAGTCTCAAT
GGTCGTTATCTTGGAACTTCGTGTTTAGGATAGGCACGTCTTCGGAGTTA
GTCTGGGCACAGCAGAAATCACCGCACATAGATAACCCGCATTATAAATA
AAACAGAGGAAGCACTTGAAGAAGACAGTCCATACTGCGGCGCATTTTAT
GTATTACTGAAAGTTGCCCTTTACTGACCACTGCAGTGTTGTGGCATGTA
CGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2015:15816..16518+

>mRNA_H-paniculata_contig2015.5191.1 ID=mRNA_H-paniculata_contig2015.5191.1|Name=mRNA_H-paniculata_contig2015.5191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig2015:15816..16518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCCAAGCCTGCTGCTATTGCTGCTGGTCATCGGCCTGGGCGCCGC
TCGAGGCTTCGGGGTGGGGCTTGCGCCGAACTGTGGGGCCGGAGTTGTAG
CACAGCATGGACAGCATGTAGTAGGTGGGTTTAGCGCTAACAGAGTCGGG
AGAGACACCGATGCAGTTTCAGTGATGATGTCCGCGTCGCAGTTCAACCG
GGACGGTGGCGCCAACGAGCACATGGACAAACGGGACGATCAACGAGAAG
ACGACCCCGTTGTAAGTATTGCTCACGGCAATGTCTGGGTTGTAATATCC
CTTACTTTTCTTGTGGTGAGGGTTAACAGTCTCAATGGTCGTTATCTTGG
AACTTCGTGTTTAGGATAGATGTACCCAAGCCTGCTGCTATTGCTGCTGG
TCATCGGCCTGGGCGCCGCTCGAGGCTTCGGGGTGGGGCTTGCGCCGAAC
TGTGGGGCCGGAGTTGTAGCACAGCATGGACAGCATGTAGTAGGTGGGTT
TAGCGCTAACAGAGTCGGGAGAGACACCGATGCAGTTTCAGTGATGATGT
CCGCGTCGCAGTTCAACCGGGACGGTGGCGCCAACGAGCACATGGACAAA
CGGGACGATCAACGAGAAGACGACCCCGTTGTAAGTATTGCTCACGGCAA
TGTCTGGGTTGTAATATCCCTTACTTTTCTTGTGGTGAGGGTTAACAGTC
TCAATGGTCGTTATCTTGGAACTTCGTGTTTAGGATAG
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