prot_H-paniculata_contig20135.5186.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig20135.5186.1
Unique Name	prot_H-paniculata_contig20135.5186.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	82

Homology

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BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-19
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  107 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 186

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BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.730e-19
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:   43 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 122

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BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.060e-19
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD   G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:   43 GECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 122

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BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.790e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  250 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 329

[Close]

BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JYF4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W  GCA  RD+  G + I+Q  ++D+++K FDV++ + +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  120 GECQWLDGCAIVRDVEAGTLGISQTAYIDSMVKRFDVQSTYRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 199

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BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.000e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  503 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 582

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BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.040e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  963 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 1042

[Close]

BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.040e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct: 1072 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSR 1151

[Close]

BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.040e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  900 GECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 979

[Close]

BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.050e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query:    3 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 82
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct: 1342 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 1421

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JRS6_9PHAE	1.190e-19	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KPT0_9PHAE	2.730e-19	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KBH1_9PHAE	4.060e-19	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KTL3_9PHAE	1.790e-18	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JYF4_9PHAE	1.830e-18	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K1T2_9PHAE	2.000e-18	45.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KSG8_9PHAE	2.040e-18	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JQW4_9PHAE	2.040e-18	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JRE9_9PHAE	2.040e-18	45.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JZQ8_9PHAE	2.050e-18	45.00	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig20135	contig	H-paniculata_contig20135:4225..4470 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig20135.5186.1	mRNA_H-paniculata_contig20135.5186.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig20135 4225..4470 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig20135.5186.1 ID=prot_H-paniculata_contig20135.5186.1|Name=mRNA_H-paniculata_contig20135.5186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
TRGELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQ
ADLGPRREDEELSDKPVRSAVGSLIWLSGMTR