mRNA_H-paniculata_contig20135.5186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20135.5186.1
Unique NamemRNA_H-paniculata_contig20135.5186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-19
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  107 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 186
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.730e-19
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:   43 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 122
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.060e-19
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD   G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:   43 GECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 122
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.790e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  250 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 329
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JYF4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.830e-18
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W  GCA  RD+  G + I+Q  ++D+++K FDV++ + +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  120 GECQWLDGCAIVRDVEAGTLGISQTAYIDSMVKRFDVQSTYRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 199
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.000e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  503 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 582
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.040e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  963 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 1042
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.040e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct: 1072 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSR 1151
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.040e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct:  900 GECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 979
[Close]
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.050e-18
Identity = 36/80 (45.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQADLGPRREDEELSDKPVRSAVGSLIWLSGMTR 246
            GE +W+ GCA  RD+  G +RI+Q  ++D++++ FDV++   +P +  ADLGP+REDEE  + PVR A+GS++W+S  +R
Sbjct: 1342 GECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR 1421
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20135.5186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE1.190e-1945.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE2.730e-1945.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBH1_9PHAE4.060e-1945.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE1.790e-1845.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JYF4_9PHAE1.830e-1845.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE2.000e-1845.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE2.040e-1845.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE2.040e-1845.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE9_9PHAE2.040e-1845.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.050e-1845.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20135contigH-paniculata_contig20135:4225..4470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.4685779-CDS-H-paniculata_contig20135:4224..44701622929517.4685779-CDS-H-paniculata_contig20135:4224..4470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20135 4225..4470 +
1691480895.4161713-CDS-H-paniculata_contig20135:4224..44701691480895.4161713-CDS-H-paniculata_contig20135:4224..4470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20135 4225..4470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20135.5186.1prot_H-paniculata_contig20135.5186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20135 4225..4470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20135.5186.1

>prot_H-paniculata_contig20135.5186.1 ID=prot_H-paniculata_contig20135.5186.1|Name=mRNA_H-paniculata_contig20135.5186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
TRGELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKCFDVETEFNLPVSQQ
ADLGPRREDEELSDKPVRSAVGSLIWLSGMTR
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mRNA from alignment at H-paniculata_contig20135:4225..4470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20135.5186.1 ID=mRNA_H-paniculata_contig20135.5186.1|Name=mRNA_H-paniculata_contig20135.5186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig20135:4225..4470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGAGGCGAGCTCAAGTGGTACCTGGGTTGCGCATTTTGGCGTGACAT
AGTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCA
TTAAATGTTTTGACGTGGAAACCGAGTTTAACCTTCCTGTGTCTCAGCAG
GCAGATCTTGGGCCTAGGAGGGAGGATGAGGAGTTGTCTGACAAGCCTGT
GCGCTCGGCTGTTGGGAGTTTGATATGGTTAAGTGGTATGACGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20135:4225..4470+

>mRNA_H-paniculata_contig20135.5186.1 ID=mRNA_H-paniculata_contig20135.5186.1|Name=mRNA_H-paniculata_contig20135.5186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig20135:4225..4470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGAGGCGAGCTCAAGTGGTACCTGGGTTGCGCATTTTGGCGTGACAT
AGTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCA
TTAAATGTTTTGACGTGGAAACCGAGTTTAACCTTCCTGTGTCTCAGCAG
GCAGATCTTGGGCCTAGGAGGGAGGATGAGGAGTTGTCTGACAAGCCTGT
GCGCTCGGCTGTTGGGAGTTTGATATGGTTAAGTGGTATGACGAGAACGA
GAGGCGAGCTCAAGTGGTACCTGGGTTGCGCATTTTGGCGTGACATAGTG
AGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCATTAA
ATGTTTTGACGTGGAAACCGAGTTTAACCTTCCTGTGTCTCAGCAGGCAG
ATCTTGGGCCTAGGAGGGAGGATGAGGAGTTGTCTGACAAGCCTGTGCGC
TCGGCTGTTGGGAGTTTGATATGGTTAAGTGGTATGACGAGA
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