mRNA_H-paniculata_contig20123.5183.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20123.5183.1
Unique NamemRNA_H-paniculata_contig20123.5183.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: D7G424_ECTSI (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G424_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.430e-39
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLRNILGMEA 342
            RH+EDY AALD+VR   L + +D+SR+ALWGTSFAGGHVL VAA D  P+ VG IRA++SQV PHLDGRAASKRSLK+RG +GALKM  A +GD LR +LGM+A
Sbjct:  133 RHVEDYIAALDYVRGPSLADVIDSSRVALWGTSFAGGHVLNVAAADDVPSRVGDIRAIISQV-PHLDGRAASKRSLKMRGKAGALKMAAAAIGDMLRGLLGMQA 235          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A7S3ZD74_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZD74_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 7.400e-21
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   34 HIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLRNILGME 339
            H+ED+ AA+DHV    L  +VD  RI LWGTSFAGGHVL V +  R  T +  I   VSQV PHL G+ AS   +K RGV G L++  A L D  R+++G+ 
Sbjct:  163 HVEDWNAAIDHVASGGLNGKVDPKRIGLWGTSFAGGHVLTVGSMRRNDTRIAGI---VSQV-PHLSGKRASLNGVKQRGVLGTLRLAAAALTDAARSLVGLS 260          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: I0ZAL6_COCSC (Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZAL6_COCSC)

HSP 1 Score: 94.4 bits (233), Expect = 1.350e-20
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLRNILGME 339
            RH+ED+ AALD+VR T LG  VD  RI LWGTSFAGGHVL  AA++       +I AVVSQV PHL G  ASKRSLK RG+  ++++ +A L D  R ++G  
Sbjct:  138 RHLEDWDAALDYVRST-LGAEVDVRRIGLWGTSFAGGHVLVTAAKEGI-----NISAVVSQV-PHLSGFEASKRSLKNRGIPQSVRLFLAGLHDRARVLVGQS 233          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A8J9RNA6_9CHLO (Quorum-quenching protein AidA n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RNA6_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 3.390e-20
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLRNILGM 336
            RH+ED++AALD+VR T LG  VD + I LWGTSFAGGHVL  AA++       +I AVVSQV PHL G   SK+SLK RGV  ++++ +A L D  R+++G+
Sbjct:  216 RHLEDWEAALDYVRST-LGAEVDVTSIGLWGTSFAGGHVLVTAAKEG-----SNISAVVSQV-PHLSGFEVSKQSLKNRGVPQSVRLFLAGLHDRARDLVGL 310          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A150GSC7_GONPE (Hydrolase_4 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GSC7_GONPE)

HSP 1 Score: 90.9 bits (224), Expect = 3.810e-19
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLR 321
            RH++DY AAL  V+   LG + D +++ALWGTS+AGGHVL  AAE  P    GS+ AVVS V PHLDG  AS+ S++ R V  +L++++A + D LR
Sbjct:  149 RHLQDYAAALAFVKSGALGPQYDVNKVALWGTSYAGGHVLVTAAEAEP----GSVAAVVSMV-PHLDGVEASRNSVRRRSVLPSLRLLIAGMHDALR 240          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A2K3D4B7_CHLRE (Hydrolase_4 domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D4B7_CHLRE)

HSP 1 Score: 90.5 bits (223), Expect = 6.660e-19
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLR 321
            RH+ED++AAL  V+   LG + D  R++LWGTSFAGGHVL V A D PP HV   R++VS V PHLDG   +K +L+ RG+   L+++ A   D LR
Sbjct:  136 RHVEDWRAALAFVKGGGLGSQYDTDRVSLWGTSFAGGHVL-VTAADLPPGHV---RSIVSMV-PHLDGMENAKANLRTRGLPAVLRLLAAAAHDKLR 227          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A8J4EU00_9CHLO (Hydrolase_4 domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EU00_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 1.170e-18
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLR 321
            RH++D++AAL  V+   LG   D  ++ LWGTS+AGGHVL VA+E  P    GS+ AVVS + PHLDG  ASK S++ RG++ +L+++ A + D LR
Sbjct:  146 RHLDDWRAALRFVKSGGLGPEYDTQKVGLWGTSYAGGHVLVVASEQAP----GSLAAVVSMI-PHLDGVEASKASVRRRGLAASLRLLGAGIHDRLR 237          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A836BC70_9CHLO (Hydrolase_4 domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BC70_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 2.480e-18
Identity = 46/97 (47.42%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLR 321
            RH+ED++AA+D V+   LG + D  R++LWGTSFAGGHVL V A D PP   G+++++V+ V P LDG  ++K +L+ RG+ G L+++ A   D LR
Sbjct:  139 RHVEDWRAAVDFVKGGGLGPQYDTERVSLWGTSFAGGHVL-VTAADLPP---GAVKSIVAMV-PFLDGIESAKANLRARGLPGVLRLLAAAAHDKLR 230          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A836C3B6_9CHLO (Hydrolase_4 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C3B6_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 3.760e-18
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLRNILGMEA 342
            RH+ED+++A+       LG   D  R+ALWGTSFAGGHVL V A D PP   GS+ A++S V PHLDG AAS+ +++ RG+   L+++ A L D  R  L +EA
Sbjct:  146 RHLEDWRSAVKFATSGALGPDFDTERVALWGTSFAGGHVL-VTAADLPP---GSVSAIISMV-PHLDGMAASRAAVRRRGLPATLRLLAAGLHDKAR-ALAVEA 243          
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Match: A0A8J4FHC2_9CHLO (Hydrolase_4 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FHC2_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 4.180e-18
Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   31 RHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVLRVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVATLGDHLR 321
            RH++D++AAL  V+   LG   D  ++ LWGTS+AGGHVL VA+E  P    GS+ AVVS + PHLDG  ASK S++ RG++ +L+++   + D LR
Sbjct:  153 RHLDDWRAALRFVQSGGLGPEYDTQKVGLWGTSYAGGHVLVVASEQAP----GSLAAVVSMI-PHLDGVEASKASIRRRGLAASLRLLGVGIHDRLR 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20123.5183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G424_ECTSI3.430e-3968.27AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A7S3ZD74_9EUKA7.400e-2149.02Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
I0ZAL6_COCSC1.350e-2054.37Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoi... [more]
A0A8J9RNA6_9CHLO3.390e-2052.94Quorum-quenching protein AidA n=1 Tax=Coccomyxa sp... [more]
A0A150GSC7_GONPE3.810e-1950.52Hydrolase_4 domain-containing protein n=1 Tax=Goni... [more]
A0A2K3D4B7_CHLRE6.660e-1950.52Hydrolase_4 domain-containing protein n=2 Tax=Chla... [more]
A0A8J4EU00_9CHLO1.170e-1848.45Hydrolase_4 domain-containing protein n=1 Tax=Volv... [more]
A0A836BC70_9CHLO2.480e-1847.42Hydrolase_4 domain-containing protein n=1 Tax=Chla... [more]
A0A836C3B6_9CHLO3.760e-1848.08Hydrolase_4 domain-containing protein n=1 Tax=Edap... [more]
A0A8J4FHC2_9CHLO4.180e-1847.42Hydrolase_4 domain-containing protein n=2 Tax=Volv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20123contigH-paniculata_contig20123:256..1879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.4e-32
Seed eggNOG ortholog2880.D7G424
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs2RZEK@2759,COG1073@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.2776713-CDS-H-paniculata_contig20123:255..3811622929517.2776713-CDS-H-paniculata_contig20123:255..381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20123 256..381 -
1691480895.3657324-CDS-H-paniculata_contig20123:255..3811691480895.3657324-CDS-H-paniculata_contig20123:255..381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20123 256..381 -
1622929517.3260868-CDS-H-paniculata_contig20123:1663..18791622929517.3260868-CDS-H-paniculata_contig20123:1663..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20123 1664..1879 -
1691480895.3749635-CDS-H-paniculata_contig20123:1663..18791691480895.3749635-CDS-H-paniculata_contig20123:1663..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20123 1664..1879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20123.5183.1prot_H-paniculata_contig20123.5183.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20123 256..1879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20123.5183.1

>prot_H-paniculata_contig20123.5183.1 ID=prot_H-paniculata_contig20123.5183.1|Name=mRNA_H-paniculata_contig20123.5183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MLIARRGVGGRHIEDYKAALDHVRRTKLGERVDASRIALWGTSFAGGHVL
RVAAEDRPPTHVGSIRAVVSQVTPHLDGRAASKRSLKLRGVSGALKMVVA
TLGDHLRNILGMEA
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mRNA from alignment at H-paniculata_contig20123:256..1879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20123.5183.1 ID=mRNA_H-paniculata_contig20123.5183.1|Name=mRNA_H-paniculata_contig20123.5183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1624bp|location=Sequence derived from alignment at H-paniculata_contig20123:256..1879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCATCGCACGCCGGGGCGTGGGCGGCAGGCATATCGAGGACTACAA GGCTGCCTTGGACCATGTCCGACGCACGAAACTCGGCGAGCGAGTGGACG CGTCTAGGATAGCTCTTTGGGGGACATCTTTTGCGGGTGGGCACGTGCTG CGCGTGGCTGCTGAGGATCGCCCTCCGACACACGTGGGGAGCATCCGTGC GGTGGTGTCTCAGGTAGTTCGTAGGAATAGGCGGGAATGGCGTGGCTGCT GAAGGCTTTTTTTTTTTCTAGTGTTTTTGGTACATGACTTTTTTGTTTTC CCTATGCCGTGGCTGTAGCAGGCCTTTCTTGGGTCGAAACGGATAAATTG TGTAGAACGAATAGAGTCGCTAATGACAGCTCTTGTTGTTGGTGTTGATA GAGGTTTTCCGATGCACTCGTGATTTCGTTGGTTCCTAATTGCGGCTCTT GGCACACCCCCAAATATCGATTTTTGCAAATTGCATTTTTTTGAGGGGGA AATATGATATCTTTCCCAACTTTTTGTTATTTCACAGCTAGGTGTGTACG GGCACTTTACAGGGGAAAAACTTCTATTCTGGTAGAAATGTTGGTGGGGA CAAGTGAAGAAAATGTTGCTATTCTTCTCGTACATTCAGAATAGATGTAA TCTATATGAAGTCAAGAAAGAAAACAAACGTAACATTGCAGGGTATTATT TGCTATTGTTGTTATCAAGCAAATATCTGTACAAGTCTTGTTCGTTGTAC TGTAGTTACGAAGATGTCGGTATTGTGCGTATTTGCGACACGAAAAGAAT CTTCGAAATTGAACAAGTGCGGATGCAAACGGTGAACTCGCGTAATGAAA GCAGTACTTATACGATAGCACTTACCAACTGGAACTCAAGCTTGGTCAGC AAATTGTCGTTTTTTCATTGGTTGATCAGCTAAATTGTTTGTTGTCCAGT CAAATGAGGTGTATGTATTTATTTATGTACAGCCTATTTCAAGTTCCGTA ACTGGACTGACCGTCCTTCGTTATCGGTACTACGGTACTGAATCGGTGGG GGCAGTCGCCCGCCGCACTCGCTCGTCAACCTTGTAATTTGACGGTGATA TCCTGTGACGAAAATAGTATTCCCTTTCCTAGGCAGGATTTCGTGAACGC TCATTTTCCTTCCTTTTTACTACTCTAGTATTATTAGTCCAGTCCGCCCC CCAAGTTGCAGGCTAGACTATCACTCTTCCTCCAACGGTATCTGCGTTCC TCTGCGCAGTTTTCAACGATCGTTGGCGACCACCTTCAGTTTAGTGTAGT GTATAGTGTAGGTGCTATTTATTGCTCAGCAGAGTTAGTTGGTTAGTTAC CTGTTGTACAACAAATTCATGTCTTCTTCATGTTTTATGTTTCATGTTTC ATGTCCCTCACGGCAGGTCCCGCTGCTCTGCTCTGCCTCAACAACTGTTT TTTTTCCGCGTGCCTCCTGCCCCCGTTGTCCTCCTTTGTTGGTGGTAGAC GCCTCATCTAGACGGGAGGGCAGCGAGCAAGCGATCACTCAAACTTCGCG GCGTATCGGGCGCGTTGAAGATGGTTGTGGCTACGCTTGGGGATCACTTA AGAAATATTTTGGGAATGGAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20123:256..1879-

>mRNA_H-paniculata_contig20123.5183.1 ID=mRNA_H-paniculata_contig20123.5183.1|Name=mRNA_H-paniculata_contig20123.5183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig20123:256..1879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCATCGCACGCCGGGGCGTGGGCGGCAGGCATATCGAGGACTACAA
GGCTGCCTTGGACCATGTCCGACGCACGAAACTCGGCGAGCGAGTGGACG
CGTCTAGGATAGCTCTTTGGGGGACATCTTTTGCGGGTGGGCACGTGCTG
CGCGTGGCTGCTGAGGATCGCCCTCCGACACACGTGGGGAGCATCCGTGC
GGTGGTGTCTCAGGTAATGCTCATCGCACGCCGGGGCGTGGGCGGCAGGC
ATATCGAGGACTACAAGGCTGCCTTGGACCATGTCCGACGCACGAAACTC
GGCGAGCGAGTGGACGCGTCTAGGATAGCTCTTTGGGGGACATCTTTTGC
GGGTGGGCACGTGCTGCGCGTGGCTGCTGAGGATCGCCCTCCGACACACG
TGGGGAGCATCCGTGCGGTGGTGTCTCAGGTAACGCCTCATCTAGACGGG
AGGGCAGCGAGCAAGCGATCACTCAAACTTCGCGGCGTATCGGGCGCGTT
GAAGATGGTTGTGGCTACGCTTGGGGATCACTTAAGAAATATTTTGGGAA
TGGAAGCGACGCCTCATCTAGACGGGAGGGCAGCGAGCAAGCGATCACTC
AAACTTCGCGGCGTATCGGGCGCGTTGAAGATGGTTGTGGCTACGCTTGG
GGATCACTTAAGAAATATTTTGGGAATGGAAGCG
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