mRNA_H-paniculata_contig20121.5182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20121.5182.1
Unique NamemRNA_H-paniculata_contig20121.5182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20121.5182.1 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.120e-21
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:    8 PPFWSKGAVKTRISAIRGHLVSGVSQGIIKKHLPDFDSRAFPPIAEEVFSTFLEAHRKGDLRVLAGVTTEDFYATL 235
            PP  S   V+ R+  +R HL SGV  GII+KH+PDF    FPP+A ++F  F EAHRKGD R LAG+TTE+ YA+L
Sbjct:   42 PPMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASL 117
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BLAST of mRNA_H-paniculata_contig20121.5182.1 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.750e-15
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 2 
Query:    8 PPFWSKGAVKTRISAIRGHLVSGVSQGIIKKHLPDFDSRAFPPIAEEVFSTFLEAHRKGDLRVLAGVTTEDFY 226
            PP ++   +K R +  +GH+ S  +  IIKKH+P F  + FPPIA++VF +F++AHRKGDL  L  + TE  +
Sbjct:    5 PPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLH 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20121.5182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT9_ECTSI1.120e-2155.26Tim44 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YW25_9STRA4.750e-1543.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20121contigH-paniculata_contig20121:1986..2812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.2154887-CDS-H-paniculata_contig20121:1985..20821622929517.2154887-CDS-H-paniculata_contig20121:1985..2082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20121 1986..2082 +
1691480895.347038-CDS-H-paniculata_contig20121:1985..20821691480895.347038-CDS-H-paniculata_contig20121:1985..2082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20121 1986..2082 +
1622929517.230362-CDS-H-paniculata_contig20121:2671..28111622929517.230362-CDS-H-paniculata_contig20121:2671..2811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20121 2672..2811 +
1691480895.357337-CDS-H-paniculata_contig20121:2671..28111691480895.357337-CDS-H-paniculata_contig20121:2671..2811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20121 2672..2811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20121.5182.1prot_H-paniculata_contig20121.5182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20121 1986..2811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20121.5182.1

>prot_H-paniculata_contig20121.5182.1 ID=prot_H-paniculata_contig20121.5182.1|Name=mRNA_H-paniculata_contig20121.5182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
AISSILEQGSSEDANKRHKGTLGVWGVAGNYQEAFTGLRLQGLSSDSGRG
VFNVPRGTSKRRSSGPRRRHHRGLLRYFK
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mRNA from alignment at H-paniculata_contig20121:1986..2812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20121.5182.1 ID=mRNA_H-paniculata_contig20121.5182.1|Name=mRNA_H-paniculata_contig20121.5182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=827bp|location=Sequence derived from alignment at H-paniculata_contig20121:1986..2812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATTTCCTCCATTCTGGAGCAAGGGAGCAGTGAAGACGCGAATAAGCG
CCATAAGGGGACACTTGGTGTCTGGGGTGTCGCAGGGAATTATCAAGGTA
TATCCTGTAGGGAGGAATACCGTTGCCATCATGGCGCAGATTTTTTTCGT
GTGTCCAGTAATCACTAAAACCCATATGTAAGCCCGTTTTTTATGAGCGT
CGGAAATTTGATTTTAAAGCAGTCACGTTCTTGTTTTACTATCCAATTGT
TGAGAAATACCCGAATATTAAGATTCCAAGGCAACAATTCGATGCGGATA
AGAAATGGGCTATCGTTCGATAGCTACTCTGCGGGTGTTGCTTGCTGGTA
TCGGGTCTAACCAGAAAGGGGGCGGTCTCATGCGACTACACCGGGGTGGC
CGCGACCGACCGTGTTACTAGTAGCTTTCAAAAAGTCCGAACGTTTTGGC
GTTTTTCGTGTTTTTCGTGTTTGTTGGAATCACTCTGTTGCAATATTGTT
GACTTTGTCCGCACGCGCTCACTTTGTGTGTGGTTTCACTGTCAGCATAT
GAGGCGAGAAGTGACTGCTGGCACTCCCCACCCTCGTTTTTTTGTTTTAT
TTTTCACGTCGATGTTCGATACATTTTCCTCTTTTTTTTGCTCCTTGTTT
TTGTACACACGACATGCATATTTTTGGTAACTGCAGAAGCATTTACCGGA
CTTCGACTCCAGGGCCTTTCCTCCGATAGCGGAAGAGGTGTTTTCAACGT
TCCTCGAGGCACATCGAAAAGGAGATCTTCGGGTCCTCGCAGGCGTCACC
ACCGAGGACTTTTACGCTACTTTAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20121:1986..2812+

>mRNA_H-paniculata_contig20121.5182.1 ID=mRNA_H-paniculata_contig20121.5182.1|Name=mRNA_H-paniculata_contig20121.5182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig20121:1986..2812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATTTCCTCCATTCTGGAGCAAGGGAGCAGTGAAGACGCGAATAAGCG
CCATAAGGGGACACTTGGTGTCTGGGGTGTCGCAGGGAATTATCAAGGCC
ATTTCCTCCATTCTGGAGCAAGGGAGCAGTGAAGACGCGAATAAGCGCCA
TAAGGGGACACTTGGTGTCTGGGGTGTCGCAGGGAATTATCAAGAAGCAT
TTACCGGACTTCGACTCCAGGGCCTTTCCTCCGATAGCGGAAGAGGTGTT
TTCAACGTTCCTCGAGGCACATCGAAAAGGAGATCTTCGGGTCCTCGCAG
GCGTCACCACCGAGGACTTTTACGCTACTTTAAAAAGCATTTACCGGACT
TCGACTCCAGGGCCTTTCCTCCGATAGCGGAAGAGGTGTTTTCAACGTTC
CTCGAGGCACATCGAAAAGGAGATCTTCGGGTCCTCGCAGGCGTCACCAC
CGAGGACTTTTACGCTACTTTAAA
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