mRNA_H-paniculata_contig20098.5174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20098.5174.1
Unique NamemRNA_H-paniculata_contig20098.5174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20098.5174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20098contigH-paniculata_contig20098:2216..3117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size652
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20098.5174.1prot_H-paniculata_contig20098.5174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20098 2633..3007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.925121-UTR-H-paniculata_contig20098:2215..22461622929515.925121-UTR-H-paniculata_contig20098:2215..2246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20098 2216..2246 +
1691480894.7483852-UTR-H-paniculata_contig20098:2215..22461691480894.7483852-UTR-H-paniculata_contig20098:2215..2246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20098 2216..2246 +
1622929515.9413698-UTR-H-paniculata_contig20098:2496..26321622929515.9413698-UTR-H-paniculata_contig20098:2496..2632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20098 2497..2632 +
1691480894.7621315-UTR-H-paniculata_contig20098:2496..26321691480894.7621315-UTR-H-paniculata_contig20098:2496..2632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20098 2497..2632 +
1622929515.9752364-UTR-H-paniculata_contig20098:3007..31171622929515.9752364-UTR-H-paniculata_contig20098:3007..3117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20098 3008..3117 +
1691480894.7818568-UTR-H-paniculata_contig20098:3007..31171691480894.7818568-UTR-H-paniculata_contig20098:3007..3117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20098 3008..3117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.9594486-CDS-H-paniculata_contig20098:2632..30071622929515.9594486-CDS-H-paniculata_contig20098:2632..3007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20098 2633..3007 +
1691480894.7718353-CDS-H-paniculata_contig20098:2632..30071691480894.7718353-CDS-H-paniculata_contig20098:2632..3007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20098 2633..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20098.5174.1

>prot_H-paniculata_contig20098.5174.1 ID=prot_H-paniculata_contig20098.5174.1|Name=mRNA_H-paniculata_contig20098.5174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MTPSIGEVTRSDGIGDETGGGAGGEIEPGAAGLEGAAGQPFRDLDWSVGR
FAVFAMPADNSIPLLIDQIVEVIEGTEREVILDWYSPKRKNRRRSSYGKG
ALLTKTRPTAQSSTGPLSEWTPHG*
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mRNA from alignment at H-paniculata_contig20098:2216..3117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20098.5174.1 ID=mRNA_H-paniculata_contig20098.5174.1|Name=mRNA_H-paniculata_contig20098.5174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=902bp|location=Sequence derived from alignment at H-paniculata_contig20098:2216..3117+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAACGCGCCAGGGGCATTCTCATGTCAGGCGAGCCGCATCTTTCGTT
TGGTCGGCTTGCTACCTCGAACTCACTCGTAAAGGGTTCGCGCATGGAAT
CTTTAAACTAACCAATGGGTGGTCCAACGGTGTTGTGCACTGACGCACGC
TACTGACCATTACCGAGGTGTGACTGTCCCCCCTGAATACACGCTTCTGA
CCCACATCCCGAGTCTGTGTGTATGTTCGCTATCCAACAATTTTCTCGTA
CACCACTTTGTCAATCCTACACACTATCCAGGCTCGTCACGGACGCTCCA
GTCCGTTATGGCAGAAAACTATCAAGCATTGAGGAGATCGCCGAGAGTAC
CCCCAACGGCTTCGCGCGGGATACAAGCTTCTACTCAAAAGTGCCTGCGC
AGCATGATGGACCCGATATGACGCCGTCCATCGGTGAAGTCACGAGAAGC
GATGGAATTGGGGATGAAACTGGAGGTGGTGCTGGTGGCGAAATCGAACC
CGGCGCTGCGGGCCTGGAAGGTGCTGCAGGCCAACCGTTTAGGGACCTCG
ATTGGAGTGTGGGGCGCTTTGCAGTTTTTGCTATGCCCGCGGACAACTCA
ATTCCTCTCCTAATCGACCAGATTGTGGAAGTCATTGAGGGGACAGAAAG
GGAGGTAATCCTTGATTGGTACTCGCCAAAACGGAAGAATCGGCGGCGGA
GCTCGTATGGTAAGGGTGCACTCCTGACCAAGACCCGACCGACCGCTCAA
AGCAGTACAGGGCCCCTGAGTGAATGGACGCCGCATGGATGACGTTTCCT
TAGCTCCTCTCCACCAAAACGATTCCGCAATCAGTGTAGGATACGGTGGC
GGAACAAGTGCTCCCGACACAAGACGACGACGAGGACGAGTGGAAGGAGG
AA
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Coding sequence (CDS) from alignment at H-paniculata_contig20098:2216..3117+

>mRNA_H-paniculata_contig20098.5174.1 ID=mRNA_H-paniculata_contig20098.5174.1|Name=mRNA_H-paniculata_contig20098.5174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig20098:2216..3117+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCCGTCCATCGGTGAAGTCACGAGAAGCGATGGAATTGGGGATGA
AACTGGAGGTGGTGCTGGTGGCGAAATCGAACCCGGCGCTGCGGGCCTGG
AAGGTGCTGCAGGCCAACCGTTTAGGGACCTCGATTGGAGTGTGGGGCGC
TTTGCAGTTTTTGCTATGCCCGCGGACAACTCAATTCCTCTCCTAATCGA
CCAGATTGTGGAAGTCATTGAGGGGACAGAAAGGGAGGTAATCCTTGATT
GGTACTCGCCAAAACGGAAGAATCGGCGGCGGAGCTCGTATGGTAAGGGT
GCACTCCTGACCAAGACCCGACCGACCGCTCAAAGCAGTACAGGGCCCCT
GAGTGAATGGACGCCGCATGGATGAATGACGCCGTCCATCGGTGAAGTCA
CGAGAAGCGATGGAATTGGGGATGAAACTGGAGGTGGTGCTGGTGGCGAA
ATCGAACCCGGCGCTGCGGGCCTGGAAGGTGCTGCAGGCCAACCGTTTAG
GGACCTCGATTGGAGTGTGGGGCGCTTTGCAGTTTTTGCTATGCCCGCGG
ACAACTCAATTCCTCTCCTAATCGACCAGATTGTGGAAGTCATTGAGGGG
ACAGAAAGGGAGGTAATCCTTGATTGGTACTCGCCAAAACGGAAGAATCG
GCGGCGGAGCTCGTATGGTAAGGGTGCACTCCTGACCAAGACCCGACCGA
CCGCTCAAAGCAGTACAGGGCCCCTGAGTGAATGGACGCCGCATGGATGA
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