mRNA_H-paniculata_contig20061.5163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: D7FR23_ECTSI (KRR-R motif-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR23_ECTSI) HSP 1 Score: 121 bits (304), Expect = 4.940e-30 Identity = 94/162 (58.02%), Postives = 109/162 (67.28%), Query Frame = 1
Query: 1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDRGNEHHHSPDXXXXXXXXXXXXXRGAGVEADGE----------AEGDR--GEDIARLKKGFLITKGNGAGGAVS-APTSAQDFVQPKKTKR 447
P+ IREKK YTPFPPAQ PRKVDEQ+E+GE+FLNERQRKAKKRAEKKAKSAE+SAA++K RE++L PT G+ H D XXXXXXX AEG + G+D+ RLKKGFL G G G AVS A TSA+DFVQPKK K+
Sbjct: 234 PAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKAKSAELSAAKRKNREQDLEPTE---GDYDGHGADEGGPAGXXXXXXXXXXXXXXXXXXXXXXXXPPLAEGSKEMGQDLDRLKKGFL-DGGGGRGDAVSTATTSAEDFVQPKKRKK 391
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A6H5JFM2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM2_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.820e-22 Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1
Query: 1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQD 213
P+ IREKK YTPFPPAQ PRKVDEQ+E+GE+FLNERQRKAKKRAEKKAKSAE+SAA++ RE++L PT D
Sbjct: 37 PAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKAKSAELSAAKQNNREQDLEPTKGD 107
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A7S2W526_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W526_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 7.100e-12 Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREEN-LAPT 204
P+K ++K+ YTPFPPAQ+P KVD Q+++GEYFL E +RKAKK AEK+A+SA S RK+ RE+ +APT
Sbjct: 43 PNKTKQKRTYTPFPPAQLPSKVDLQLDSGEYFLTEHERKAKKMAEKRAQSAIKSLERKEAREKQFVAPT 111
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A7S2DCQ6_9STRA (KRR-R motif-containing protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCQ6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.000e-11 Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query: 1 PSKIRE--KKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDRGNEHHHSPDXXXXXXXXXXXXXRGAGVEADGEAEGDRGEDIARLKKGFLITKGNGAGGAVSAP-TSAQDFV 426
P K+R+ K+ YTPFPPAQ P KVD Q+E+GEYFL+E QRKA++R+EK+A +A S ARKK+RE+ P ++R A+ EA G+ +ARL + L +G G AP T+ +D V
Sbjct: 239 PFKVRDTAKRTYTPFPPAQTPSKVDLQLESGEYFLSETQRKARRRSEKQADAAATSQARKKEREQIYVPPKEERL-----------------------PSSAAEAEAGNGTGDPLARLTESVLARQG----GRKQAPETNLEDLV 356
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A7S0GYE8_9EUKA (KRR1 small subunit processome component n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GYE8_9EUKA) HSP 1 Score: 70.5 bits (171), Expect = 2.360e-11 Identity = 39/68 (57.35%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 7 KIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQ 210
KI+EKKEYTPFPPAQ+PRK+D+Q+E+GEYFL++ Q+ +++A+K A SAE A ++KKR L P Q
Sbjct: 263 KIKEKKEYTPFPPAQLPRKIDKQLESGEYFLSQDQKFQREKADKMAASAERIAKKRKKRLSELQPPTQ 330
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A1U7LGI3_NEOID (KRR1 small subunit processome component n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LGI3_NEOID) HSP 1 Score: 69.3 bits (168), Expect = 5.180e-11 Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 10 IREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDR 216
+REKKEY PFPP Q PRK+D QIE+GEYFL++R++K ++ E+KAK AE K+KREE P +D+
Sbjct: 257 VREKKEYVPFPPPQQPRKIDLQIESGEYFLSKREKKIREDDERKAKQAEKCLEGKRKREEAFVPPVEDK 325
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A0J8BEK7_BETVV (KRR1 small subunit processome component n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BEK7_BETVV) HSP 1 Score: 66.6 bits (161), Expect = 5.070e-10 Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 7 KIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAP 201
K +EKK YTPFPP Q P K+D+Q+ETGEYFL+E ++ AKK EK+ K AE SA K+KRE P
Sbjct: 221 KGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEVKQAEKSAENKRKREAAFIP 285
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: W7TDG0_9STRA (KRR1 small subunit processome component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDG0_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 5.400e-10 Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDRG 219
P +R KK YTPFPP Q P K+D Q+E+GEYFL E+QRK KK+ EK+A++ E +A ++++RE+ A++ G
Sbjct: 207 PQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAEENG 279
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A0J8CS22_BETVV (KRR1 small subunit processome component n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CS22_BETVV) HSP 1 Score: 66.6 bits (161), Expect = 5.540e-10 Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 7 KIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAP 201
K +EKK YTPFPP Q P K+D+Q+ETGEYFL+E ++ AKK EK+ K AE SA K+KRE P
Sbjct: 253 KGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEVKQAEKSAENKRKREAAFIP 317
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: UPI000C762BB9 (KRR1 small subunit processome component homolog n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C762BB9) HSP 1 Score: 66.2 bits (160), Expect = 6.620e-10 Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAP 201
P K +EK YTPFPPAQ KVD+++E+GEYFL E++RKAKK AEK+ K E RK+KRE++ P
Sbjct: 234 PHKKKEKAPYTPFPPAQPLSKVDKELESGEYFLKEKERKAKKAAEKREKQMEAQGNRKEKREKSFKP 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20061.5163.1 >prot_H-paniculata_contig20061.5163.1 ID=prot_H-paniculata_contig20061.5163.1|Name=mRNA_H-paniculata_contig20061.5163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSback to top mRNA from alignment at H-paniculata_contig20061:3076..4000+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20061.5163.1 ID=mRNA_H-paniculata_contig20061.5163.1|Name=mRNA_H-paniculata_contig20061.5163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=925bp|location=Sequence derived from alignment at H-paniculata_contig20061:3076..4000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20061:3076..4000+ >mRNA_H-paniculata_contig20061.5163.1 ID=mRNA_H-paniculata_contig20061.5163.1|Name=mRNA_H-paniculata_contig20061.5163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig20061:3076..4000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |