mRNA_H-paniculata_contig20061.5163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20061.5163.1
Unique NamemRNA_H-paniculata_contig20061.5163.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: D7FR23_ECTSI (KRR-R motif-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR23_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 4.940e-30
Identity = 94/162 (58.02%), Postives = 109/162 (67.28%), Query Frame = 1
Query:    1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDRGNEHHHSPDXXXXXXXXXXXXXRGAGVEADGE----------AEGDR--GEDIARLKKGFLITKGNGAGGAVS-APTSAQDFVQPKKTKR 447
            P+ IREKK YTPFPPAQ PRKVDEQ+E+GE+FLNERQRKAKKRAEKKAKSAE+SAA++K RE++L PT    G+   H  D      XXXXXXX                    AEG +  G+D+ RLKKGFL   G G G AVS A TSA+DFVQPKK K+
Sbjct:  234 PAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKAKSAELSAAKRKNREQDLEPTE---GDYDGHGADEGGPAGXXXXXXXXXXXXXXXXXXXXXXXXPPLAEGSKEMGQDLDRLKKGFL-DGGGGRGDAVSTATTSAEDFVQPKKRKK 391          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A6H5JFM2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.820e-22
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQD 213
            P+ IREKK YTPFPPAQ PRKVDEQ+E+GE+FLNERQRKAKKRAEKKAKSAE+SAA++  RE++L PT  D
Sbjct:   37 PAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKAKSAELSAAKQNNREQDLEPTKGD 107          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A7S2W526_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W526_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.100e-12
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREEN-LAPT 204
            P+K ++K+ YTPFPPAQ+P KVD Q+++GEYFL E +RKAKK AEK+A+SA  S  RK+ RE+  +APT
Sbjct:   43 PNKTKQKRTYTPFPPAQLPSKVDLQLDSGEYFLTEHERKAKKMAEKRAQSAIKSLERKEAREKQFVAPT 111          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A7S2DCQ6_9STRA (KRR-R motif-containing protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCQ6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.000e-11
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    1 PSKIRE--KKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDRGNEHHHSPDXXXXXXXXXXXXXRGAGVEADGEAEGDRGEDIARLKKGFLITKGNGAGGAVSAP-TSAQDFV 426
            P K+R+  K+ YTPFPPAQ P KVD Q+E+GEYFL+E QRKA++R+EK+A +A  S ARKK+RE+   P  ++R                            A+ EA    G+ +ARL +  L  +G    G   AP T+ +D V
Sbjct:  239 PFKVRDTAKRTYTPFPPAQTPSKVDLQLESGEYFLSETQRKARRRSEKQADAAATSQARKKEREQIYVPPKEERL-----------------------PSSAAEAEAGNGTGDPLARLTESVLARQG----GRKQAPETNLEDLV 356          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A7S0GYE8_9EUKA (KRR1 small subunit processome component n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GYE8_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 2.360e-11
Identity = 39/68 (57.35%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    7 KIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQ 210
            KI+EKKEYTPFPPAQ+PRK+D+Q+E+GEYFL++ Q+  +++A+K A SAE  A ++KKR   L P  Q
Sbjct:  263 KIKEKKEYTPFPPAQLPRKIDKQLESGEYFLSQDQKFQREKADKMAASAERIAKKRKKRLSELQPPTQ 330          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A1U7LGI3_NEOID (KRR1 small subunit processome component n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LGI3_NEOID)

HSP 1 Score: 69.3 bits (168), Expect = 5.180e-11
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   10 IREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDR 216
            +REKKEY PFPP Q PRK+D QIE+GEYFL++R++K ++  E+KAK AE     K+KREE   P  +D+
Sbjct:  257 VREKKEYVPFPPPQQPRKIDLQIESGEYFLSKREKKIREDDERKAKQAEKCLEGKRKREEAFVPPVEDK 325          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A0J8BEK7_BETVV (KRR1 small subunit processome component n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BEK7_BETVV)

HSP 1 Score: 66.6 bits (161), Expect = 5.070e-10
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    7 KIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAP 201
            K +EKK YTPFPP Q P K+D+Q+ETGEYFL+E ++ AKK  EK+ K AE SA  K+KRE    P
Sbjct:  221 KGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEVKQAEKSAENKRKREAAFIP 285          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: W7TDG0_9STRA (KRR1 small subunit processome component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDG0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.400e-10
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAPTAQDRG 219
            P  +R KK YTPFPP Q P K+D Q+E+GEYFL E+QRK KK+ EK+A++ E +A ++++RE+     A++ G
Sbjct:  207 PQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAEENG 279          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: A0A0J8CS22_BETVV (KRR1 small subunit processome component n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CS22_BETVV)

HSP 1 Score: 66.6 bits (161), Expect = 5.540e-10
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    7 KIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAP 201
            K +EKK YTPFPP Q P K+D+Q+ETGEYFL+E ++ AKK  EK+ K AE SA  K+KRE    P
Sbjct:  253 KGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEVKQAEKSAENKRKREAAFIP 317          
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Match: UPI000C762BB9 (KRR1 small subunit processome component homolog n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C762BB9)

HSP 1 Score: 66.2 bits (160), Expect = 6.620e-10
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKSAEVSAARKKKREENLAP 201
            P K +EK  YTPFPPAQ   KVD+++E+GEYFL E++RKAKK AEK+ K  E    RK+KRE++  P
Sbjct:  234 PHKKKEKAPYTPFPPAQPLSKVDKELESGEYFLKEKERKAKKAAEKREKQMEAQGNRKEKREKSFKP 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20061.5163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR23_ECTSI4.940e-3058.02KRR-R motif-containing protein 1 n=1 Tax=Ectocarpu... [more]
A0A6H5JFM2_9PHAE1.820e-2276.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2W526_9STRA7.100e-1259.42Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2DCQ6_9STRA1.000e-1139.31KRR-R motif-containing protein 1 n=1 Tax=Dictyocha... [more]
A0A7S0GYE8_9EUKA2.360e-1157.35KRR1 small subunit processome component n=1 Tax=Am... [more]
A0A1U7LGI3_NEOID5.180e-1155.07KRR1 small subunit processome component n=1 Tax=Ne... [more]
A0A0J8BEK7_BETVV5.070e-1058.46KRR1 small subunit processome component n=2 Tax=Be... [more]
W7TDG0_9STRA5.400e-1049.32KRR1 small subunit processome component n=2 Tax=Mo... [more]
A0A0J8CS22_BETVV5.540e-1058.46KRR1 small subunit processome component n=3 Tax=Be... [more]
UPI000C762BB96.620e-1056.72KRR1 small subunit processome component homolog n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20061contigH-paniculata_contig20061:3076..4000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.1e-26
Seed eggNOG ortholog2880.D7FR23
Preferred nameKRR1
KEGG koko:K06961
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsCOG1094@1,KOG2874@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size462
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929514.8729122-CDS-H-paniculata_contig20061:3075..32161622929514.8729122-CDS-H-paniculata_contig20061:3075..3216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20061 3076..3216 +
1691480894.3012354-CDS-H-paniculata_contig20061:3075..32161691480894.3012354-CDS-H-paniculata_contig20061:3075..3216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20061 3076..3216 +
1622929514.9233792-CDS-H-paniculata_contig20061:3679..40001622929514.9233792-CDS-H-paniculata_contig20061:3679..4000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20061 3680..4000 +
1691480894.3119993-CDS-H-paniculata_contig20061:3679..40001691480894.3119993-CDS-H-paniculata_contig20061:3679..4000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20061 3680..4000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20061.5163.1prot_H-paniculata_contig20061.5163.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20061 3076..4000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20061.5163.1

>prot_H-paniculata_contig20061.5163.1 ID=prot_H-paniculata_contig20061.5163.1|Name=mRNA_H-paniculata_contig20061.5163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
PSKIREKKEYTPFPPAQMPRKVDEQIETGEYFLNERQRKAKKRAEKKAKS
AEVSAARKKKREENLAPTAQDRGNEHHHSPDEDEPQGKKRKKRSRGAGVE
ADGEAEGDRGEDIARLKKGFLITKGNGAGGAVSAPTSAQDFVQPKKTKRQ
QRA*
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mRNA from alignment at H-paniculata_contig20061:3076..4000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20061.5163.1 ID=mRNA_H-paniculata_contig20061.5163.1|Name=mRNA_H-paniculata_contig20061.5163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=925bp|location=Sequence derived from alignment at H-paniculata_contig20061:3076..4000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGCAAAATTCGAGAGAAGAAGGAGTATACGCCCTTTCCCCCAGCGCA AATGCCTCGCAAGGTGGATGAGCAGATTGAAACTGGAGAATACTTTCTAA ACGAGCGGCAGCGCAAAGCCAAAAAGAGGGCGGAAAAGAAGGTACAATCA AAAAGAGTCTGAATAAGGTACAAGACAGTTGGCACTCGGGAAAACCATTG ATACAAGTTATGAGAGAAGAAAAAGGGTACCTTTAGCAAGACAGCAAAAT GTACATCCCCAGATAAGGTACACTTGAACAGTTGGGAGAGAAAAAGCCGT GTATATCGTAAAATGGTACGAGGGAAAACAAAGGTACAGTTAGTGAAGCG CACGTTCTTATGGTATTGCTCTGTCCACTTGAACTCTATTGTCCGTCGCC CACTCTTGGCAGTTTTCACTGGGGTGGTTTGCCAGCCATTGTAAGTTCTT CTCGCGTTGTCCCATCCATTACCTTCAATTTCTAAACGTTGTTTTTATCA TCACTTTTTTTTCTTCTTTTTTTTTGGCGTTCCTTGCCTGCCTGCGGCGG GGATGGCGGGGGTGGCGGTGGTGGCGGTGGTGGCGGCGCCGACCTCCGTA ACAGGCCAAGTCCGCCGAAGTGTCTGCCGCAAGGAAAAAGAAACGCGAGG AAAACTTGGCCCCGACGGCCCAAGACCGTGGGAACGAGCATCATCATTCT CCGGACGAAGACGAGCCACAGGGAAAGAAAAGAAAGAAACGCTCGCGCGG AGCGGGTGTCGAGGCGGACGGCGAAGCGGAGGGTGATAGAGGGGAGGATA TCGCGCGGCTTAAGAAGGGGTTCTTGATTACTAAGGGCAACGGTGCTGGC GGTGCTGTTTCTGCTCCGACTTCTGCGCAAGATTTCGTGCAGCCCAAGAA AACGAAGCGGCAGCAGCGGGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20061:3076..4000+

>mRNA_H-paniculata_contig20061.5163.1 ID=mRNA_H-paniculata_contig20061.5163.1|Name=mRNA_H-paniculata_contig20061.5163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig20061:3076..4000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGCAAAATTCGAGAGAAGAAGGAGTATACGCCCTTTCCCCCAGCGCA
AATGCCTCGCAAGGTGGATGAGCAGATTGAAACTGGAGAATACTTTCTAA
ACGAGCGGCAGCGCAAAGCCAAAAAGAGGGCGGAAAAGAAGCCGAGCAAA
ATTCGAGAGAAGAAGGAGTATACGCCCTTTCCCCCAGCGCAAATGCCTCG
CAAGGTGGATGAGCAGATTGAAACTGGAGAATACTTTCTAAACGAGCGGC
AGCGCAAAGCCAAAAAGAGGGCGGAAAAGAAGGCCAAGTCCGCCGAAGTG
TCTGCCGCAAGGAAAAAGAAACGCGAGGAAAACTTGGCCCCGACGGCCCA
AGACCGTGGGAACGAGCATCATCATTCTCCGGACGAAGACGAGCCACAGG
GAAAGAAAAGAAAGAAACGCTCGCGCGGAGCGGGTGTCGAGGCGGACGGC
GAAGCGGAGGGTGATAGAGGGGAGGATATCGCGCGGCTTAAGAAGGGGTT
CTTGATTACTAAGGGCAACGGTGCTGGCGGTGCTGTTTCTGCTCCGACTT
CTGCGCAAGATTTCGTGCAGCCCAAGAAAACGAAGCGGCAGCAGCGGGCA
TGAGCCAAGTCCGCCGAAGTGTCTGCCGCAAGGAAAAAGAAACGCGAGGA
AAACTTGGCCCCGACGGCCCAAGACCGTGGGAACGAGCATCATCATTCTC
CGGACGAAGACGAGCCACAGGGAAAGAAAAGAAAGAAACGCTCGCGCGGA
GCGGGTGTCGAGGCGGACGGCGAAGCGGAGGGTGATAGAGGGGAGGATAT
CGCGCGGCTTAAGAAGGGGTTCTTGATTACTAAGGGCAACGGTGCTGGCG
GTGCTGTTTCTGCTCCGACTTCTGCGCAAGATTTCGTGCAGCCCAAGAAA
ACGAAGCGGCAGCAGCGGGCATGA
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