mRNA_H-paniculata_contig20025.5146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20025.5146.1
Unique NamemRNA_H-paniculata_contig20025.5146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20025.5146.1 vs. uniprot
Match: A0A6H5JK35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK35_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 8.420e-68
Identity = 162/340 (47.65%), Postives = 199/340 (58.53%), Query Frame = 1 
Query:    1 GLERLMSRVGAVRAVEVAPSAPR-SRVEDLSPGGLPSSTTTAASSPSAGAGRSGAAGAASPSLSSSFLGHKEFDVHALLENMPQPRALSS-KGNRSSGS----FRSGGSAAVAAGVGSAQGVGVGLNVDAWVQFASLRGFERALEAFRGRVLKKEGAELLCEYRLGADVTGYMTEERRREREEAXXXXXXXXXXXXASIEQARGGLVSLRNGLQGLVAMVMADDRPAVTALVEPIMKKVTGHVDKAEGLFGVFN--IDEGAATAAVSHAKGEIAIARLSIRKAREAVNRDEEEDRKRLEAEHDKCLRDKARLALVQLEEMLSRGLTLIEGNREHPGIKAQ 996
            GLE +MS+ G VRAVEV PSAP  S ++                     +GR  A                +FDV+ALLENMP+PRAL+  KG  S GS                           +VDAWVQFAS  GF+ ALEA R + L+K GAEL+CEYRLG D +G+MTE++RRER  A            ASIE+ARG L  LR GLQGL   V  D RPA+    +P ++KVTGHV+ AE L GV    +DE AATAAV+HA+GE+AIARLS+RKA+ AV+R EEE+R R+E E D+ LRD AR  LVQL E LS+GL L+   R+H GIK Q
Sbjct:  218 GLEEIMSKFGPVRAVEVQPSAPSDSSIDSSDAXXXXXXXXXXXXXXXKKSGRPSA----------------DFDVNALLENMPKPRALAKDKGGASKGSGSRPXXXXXXXXXXXXXXXXXXXXXXXHVDAWVQFASFWGFQGALEALRAKTLQKAGAELVCEYRLGVDASGFMTEDQRRERVIARAEKAREEERRKASIEKARGQLALLREGLQGLRDAVAEDGRPALEDATKPTLQKVTGHVEGAEELLGVREALVDEPAATAAVAHARGEVAIARLSVRKAKAAVDRAEEEERIRIEREKDRGLRDAARATLVQLRESLSQGLALVAAERQHRGIKPQ 541
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BLAST of mRNA_H-paniculata_contig20025.5146.1 vs. uniprot
Match: D8LP18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP18_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 3.060e-66
Identity = 165/350 (47.14%), Postives = 200/350 (57.14%), Query Frame = 1 
Query:    1 GLERLMSRVGAVRAVEVAPSAPRSRVEDLSPGGLPSSTTTAASSPSAGAGRSGAAGAASPSLSSSFLGHKEFDVHALLENMPQPRALSS-KGNRSSGS---------------FRSGGSAAVAAGVGSAQGVGVGLNVDAWVQFASLRGFERALEAFRGRVLKKEGAELLCEYRLGADVTGYMTEERRREREEAXXXXXXXXXXXXASIEQARGGLVSLRNGLQGLVAMVMADDRPAVTALVEPIMKKVTGHVDKAEGLFGVFN--IDEGAATAAVSHAKGEIAIARLSIRKAREAVNRDEEEDRKRLEAEHDKCLRDKARLALVQLEEMLSRGLTLIEGNREHPGIKAQ 996
            GLE +MS+ G VRAVEV PSA                           AG          S   S     +FDV+ALLENMP+PRAL+  KG  S GS                  GG             + VGL+VDAWVQFAS  GF+ ALEA R + L+K GAEL+CEYRLG D +G+MTE++RRER  A            ASIE+ARG L  LR GLQGL   V  D RPA+    +P ++KVTGHV+ AE L GV    +DE AATAAV+HA+GE+AIARLS+RKA+ A +R EEE+R R+E E D+ LRD AR  LVQL E LS+GL L+   R+H GIK Q
Sbjct:  218 GLEEIMSKFGPVRAVEVQPSAXXXXXXXXXXXXXXF------------AGXXXXXXXXQRSSKKSGRPSADFDVNALLENMPKPRALAKDKGGGSKGSGSRPXXXXXXXXXXXXXLGGDI-----------LSVGLHVDAWVQFASFLGFQGALEALRAKTLQKAGAELVCEYRLGVDASGFMTEDQRRERVIARAEKAREEDRRKASIEKARGQLALLREGLQGLRDAVAEDGRPALEDATKPTLQKVTGHVEGAEALLGVREALVDEPAATAAVAHARGEVAIARLSVRKAKAAADRAEEEERIRIEREKDRGLRDAARATLVQLRESLSQGLALVAAERQHRGIKPQ 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20025.5146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK35_9PHAE8.420e-6847.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP18_ECTSI3.060e-6647.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20025contigH-paniculata_contig20025:1458..4592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size996
Cds size981
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20025.5146.1prot_H-paniculata_contig20025.5146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20025 1458..4577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.9968865-CDS-H-paniculata_contig20025:1457..15931622929511.9968865-CDS-H-paniculata_contig20025:1457..1593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 1458..1593 -
1691480892.9693437-CDS-H-paniculata_contig20025:1457..15931691480892.9693437-CDS-H-paniculata_contig20025:1457..1593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 1458..1593 -
1622929512.0127265-CDS-H-paniculata_contig20025:2456..26201622929512.0127265-CDS-H-paniculata_contig20025:2456..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 2457..2620 -
1691480892.977542-CDS-H-paniculata_contig20025:2456..26201691480892.977542-CDS-H-paniculata_contig20025:2456..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 2457..2620 -
1622929512.029549-CDS-H-paniculata_contig20025:3606..37471622929512.029549-CDS-H-paniculata_contig20025:3606..3747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 3607..3747 -
1691480892.9852226-CDS-H-paniculata_contig20025:3606..37471691480892.9852226-CDS-H-paniculata_contig20025:3606..3747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 3607..3747 -
1622929512.0418124-CDS-H-paniculata_contig20025:4037..45771622929512.0418124-CDS-H-paniculata_contig20025:4037..4577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 4038..4577 -
1691480892.993408-CDS-H-paniculata_contig20025:4037..45771691480892.993408-CDS-H-paniculata_contig20025:4037..4577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20025 4038..4577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.055404-UTR-H-paniculata_contig20025:4577..45921622929512.055404-UTR-H-paniculata_contig20025:4577..4592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20025 4578..4592 -
1691480893.0029957-UTR-H-paniculata_contig20025:4577..45921691480893.0029957-UTR-H-paniculata_contig20025:4577..4592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20025 4578..4592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20025.5146.1

>prot_H-paniculata_contig20025.5146.1 ID=prot_H-paniculata_contig20025.5146.1|Name=mRNA_H-paniculata_contig20025.5146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp
MSRVGAVRAVEVAPSAPRSRVEDLSPGGLPSSTTTAASSPSAGAGRSGAA
GAASPSLSSSFLGHKEFDVHALLENMPQPRALSSKGNRSSGSFRSGGSAA
VAAGVGSAQGVGVGLNVDAWVQFASLRGFERALEAFRGRVLKKEGAELLC
EYRLGADVTGYMTEERRREREEARERETKEAERRRASIEQARGGLVSLRN
GLQGLVAMVMADDRPAVTALVEPIMKKVTGHVDKAEGLFGVFNIDEGAAT
AAVSHAKGEIAIARLSIRKAREAVNRDEEEDRKRLEAEHDKCLRDKARLA
LVQLEEMLSRGLTLIEGNREHPGIKAQ
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mRNA from alignment at H-paniculata_contig20025:1458..4592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20025.5146.1 ID=mRNA_H-paniculata_contig20025.5146.1|Name=mRNA_H-paniculata_contig20025.5146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3135bp|location=Sequence derived from alignment at H-paniculata_contig20025:1458..4592- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTAGAGCGACTGATGAGCAGGGTAGGGGCCGTTCGTGCTGTCGAGGT
AGCGCCGTCAGCGCCCCGCTCCCGCGTCGAAGACCTATCGCCGGGGGGCT
TGCCTTCCTCCACCACCACCGCTGCCAGCTCGCCCAGCGCGGGAGCTGGT
CGATCAGGAGCAGCAGGAGCAGCATCACCGTCTTTGTCGTCGTCATTCCT
TGGACACAAAGAGTTTGACGTCCATGCGCTCTTGGAAAACATGCCGCAGC
CACGGGCCTTGTCTAGCAAAGGTAATAGGAGCAGCGGGTCATTTCGGAGT
GGTGGCTCCGCCGCCGTCGCCGCAGGGGTAGGCAGTGCCCAAGGGGTTGG
GGTGGGACTGAATGTGGACGCGTGGGTTCAGTTCGCATCGCTTCGAGGGT
TCGAGAGAGCGCTGGAGGCGTTTCGAGGGCGGGTGCTGAAGAAGGAAGGG
GCGGAGTTGCTGTGCGAGTACCGGCTCGGTGCCGACGTGACGGGGTATAT
GACGGAGGAGAGGCGGAGAGAGAGGGAGGAAGCGCGGGAAAGGGAGACTA
AGGAGGTATATGTAAAATGTGGCTTGTTTTTAGGAGAGGGTGGGTGGGTT
GGTGGGTGTAAGGCGGGCGGGCGGCGGCGGCGCGGGGTCAATGACAACGT
GGAGCAGTTCATCGCCGTATCATTTGCATGCATAGAAAAAGAGCACAGCG
CTAGGCCTCATGGTATCTCAATGTATACCTGTTTCGTGATCTCACTTGAA
GGCCCTCAATGACTGTGTTTGCCCTTTTCCTGTTCGTGGTTTTCGCTGCT
GGTGTTTCGTTTTGGTCGGTCGGTCGGACCGTCCGTTGGCGTCAGGCGGA
ACGACGCAGGGCGTCGATCGAGCAGGCGAGAGGTGGGCTTGTTAGCCTTC
GCAACGGTCTGCAGGGTCTGGTGGCCATGGTCATGGCCGACGACCGCCCG
GCTGTGACGGCGTTGGTGGAGCCCATCATGAAGAAGGTCCGCGAGTTATT
GATTGGTTTCGTGTTTTTTTTTCACGGTGGTGCTGGTCATGGTGGCCATG
GTCGTGGTACTACTACTAGTAGTAATTGCAGTTCTTTCAGTCGAGCAATA
CCAAGACTTGATGGTTTGGGGTTCGTTTGGACGTGTTCTCGTGTGTGTGG
TCTTAGCTGTCTTATGGGTTGGCTCCTTGAGTTGAGCTGTGTGTGTTGAA
AAGTATGTACAATAGTACCTCCTGTGTTGTTTTACAGTGTATGCTCATGA
ATCTATGTAGCTGTGTGTGTTTGAGTTCACATGAGCTTCGCACTGTGGTG
GAAATTTTGTGTATAGTAATAATCCTGCCCCCTCCCCTCCCCCCCTTCTC
TCACCCCGATTGAAAGCACTCAGTGTACCTCCTGTTTATTTATATGTCAG
TTTTTGTAGTGTTTTCCGAGGGTATATTAGCCCTCGTCTACCCCCGTCTA
CCCCTAGTTTGTTAATTTTATGGATAAGTCATCGAGTGACTGGGAGATAC
TGAAGCATGCCTCCATGTTTCTACATTACGACATCAGTTGATACTTTGGT
ACGTTTGGCTCATTTTTTACTCTCTGGCGACTTATAAGTATTTTTTTCCA
AACTGTATTTTCATCAGTGTAAGACGCTATGCTGGTTTGTGAAGCTGTCC
TCGGCAATTGGTGCACGTGGCGATGTCGCTATGTTGTAGTTGATGATCGA
TTTCTCTCGCTCCTGCGTGAAGGTTGCCCACCTCTAAGTTTATTCAGTTT
GTGGATAATAACAAAGTAATCCAGCAATTTGAAAACGCTCAGCATACCTC
CTTTTGTGGTATGGTCAATATGTTATATTTATGTATTACATATATATATA
TATATATATATATATTTATTTATTTTTTGCTACATTTTCACTTACCCCTC
TCCTCCTCCCCCCCACACACCCCCCCCTCCCCCCCACACACCCTGCCTCT
CATTTTTTCGTTTTTCGATCAGGTGACGGGGCACGTGGACAAAGCGGAGG
GGCTTTTCGGGGTGTTCAATATCGATGAGGGGGCAGCTACGGCCGCCGTT
TCTCATGCTAAGGGCGAGATCGCGATCGCTCGCCTGTCCATCCGGAAGGC
GCGGGAAGCGGTCAACAGGGACGAGGAAGAAGATAGGTAAGTCAACGAAA
TACTATTAACACCTTCCTTCCCTCAAGAACGGTGATGAAAAAACGGGTCA
GCTTTATAGTGTCTGTCCTCCGCCGTCTGTTTAGTCTATTGTTTCCGTGG
GGGGGGTGGAGGGGGAGGGTAAAAATTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGGGAGATAGGGAAAACGATCATATAATAACTCGATCGTG
CCCGTGTTGAGGTTATACAGATGACCTCAAATCTCAGTTGTGTGCACTTA
TCAGCAAGATTAGACCATGACCATTAAGGGGTTGCTATTTTTCACCTGAG
GAGAGAAGAATGTTTTACCTTCACGTAACTTTGATTTTTTCAGGTGCATA
GGTGTGGAGAATAAAGAGATCACTCCGACACACGAGTGTCTCGTAGAGGA
CATACTGGATTTTTCACGCTGGCGTGAATTTGAGATTTTGCCGGTAGGGC
CCTTGTCAATGGGGATCACAACACGACGTCGTGAGTTCGAATTCAACCTC
TGTCGATCGACGAAGAAAATAATTTTTGGAGTTGGGGAAAAAATTTTCCC
CTGTGTAATGTGTAATGCTTGCTACTGGACTTCTCCCCCTGGCGGCAGAA
ACGCACGATGGGGGTACATGTCGTGTCGCGTCTCGATAGCTGCGTAGCTA
TTCGTTCCATTCGGTCCTTGGTTGATGACCATTGGTTATCGCATACCTGA
GACGTATATTAGTTATTTTCATTCAATCATTCATTCATTACTCTTTTATC
TTGCTTGTTCTTTTTTCTCACACACAAACCAAACACATAGATACATTTTT
TGTTTGATGTGTTTTACTACATGTTTTTATTTCATTCAAATGGCGACAGA
AAACGATTGGAGGCTGAACACGACAAGTGCCTCCGCGACAAGGCGAGGTT
GGCGCTCGTGCAGCTAGAGGAAATGCTCTCCCGCGGGCTAACGTTGATTG
AGGGTAACAGGGAACACCCCGGCATCAAGGCCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20025:1458..4592-

>mRNA_H-paniculata_contig20025.5146.1 ID=mRNA_H-paniculata_contig20025.5146.1|Name=mRNA_H-paniculata_contig20025.5146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig20025:1458..4592- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAGGGTAGGGGCCGTTCGTGCTGTCGAGGTAGCGCCGTCAGCGCC
CCGCTCCCGCGTCGAAGACCTATCGCCGGGGGGCTTGCCTTCCTCCACCA
CCACCGCTGCCAGCTCGCCCAGCGCGGGAGCTGGTCGATCAGGAGCAGCA
GGAGCAGCATCACCGTCTTTGTCGTCGTCATTCCTTGGACACAAAGAGTT
TGACGTCCATGCGCTCTTGGAAAACATGCCGCAGCCACGGGCCTTGTCTA
GCAAAGGTAATAGGAGCAGCGGGTCATTTCGGAGTGGTGGCTCCGCCGCC
GTCGCCGCAGGGGTAGGCAGTGCCCAAGGGGTTGGGGTGGGACTGAATGT
GGACGCGTGGGTTCAGTTCGCATCGCTTCGAGGGTTCGAGAGAGCGCTGG
AGGCGTTTCGAGGGCGGGTGCTGAAGAAGGAAGGGGCGGAGTTGCTGTGC
GAGTACCGGCTCGGTGCCGACGTGACGGGGTATATGACGGAGGAGAGGCG
GAGAGAGAGGGAGGAAGCGCGGGAAAGGGAGACTAAGGAGATGAGCAGGG
TAGGGGCCGTTCGTGCTGTCGAGGTAGCGCCGTCAGCGCCCCGCTCCCGC
GTCGAAGACCTATCGCCGGGGGGCTTGCCTTCCTCCACCACCACCGCTGC
CAGCTCGCCCAGCGCGGGAGCTGGTCGATCAGGAGCAGCAGGAGCAGCAT
CACCGTCTTTGTCGTCGTCATTCCTTGGACACAAAGAGTTTGACGTCCAT
GCGCTCTTGGAAAACATGCCGCAGCCACGGGCCTTGTCTAGCAAAGGTAA
TAGGAGCAGCGGGTCATTTCGGAGTGGTGGCTCCGCCGCCGTCGCCGCAG
GGGTAGGCAGTGCCCAAGGGGTTGGGGTGGGACTGAATGTGGACGCGTGG
GTTCAGTTCGCATCGCTTCGAGGGTTCGAGAGAGCGCTGGAGGCGTTTCG
AGGGCGGGTGCTGAAGAAGGAAGGGGCGGAGTTGCTGTGCGAGTACCGGC
TCGGTGCCGACGTGACGGGGTATATGACGGAGGAGAGGCGGAGAGAGAGG
GAGGAAGCGCGGGAAAGGGAGACTAAGGAGGCGGAACGACGCAGGGCGTC
GATCGAGCAGGCGAGAGGTGGGCTTGTTAGCCTTCGCAACGGTCTGCAGG
GTCTGGTGGCCATGGTCATGGCCGACGACCGCCCGGCTGTGACGGCGTTG
GTGGAGCCCATCATGAAGAAGGCGGAACGACGCAGGGCGTCGATCGAGCA
GGCGAGAGGTGGGCTTGTTAGCCTTCGCAACGGTCTGCAGGGTCTGGTGG
CCATGGTCATGGCCGACGACCGCCCGGCTGTGACGGCGTTGGTGGAGCCC
ATCATGAAGAAGGTGACGGGGCACGTGGACAAAGCGGAGGGGCTTTTCGG
GGTGTTCAATATCGATGAGGGGGCAGCTACGGCCGCCGTTTCTCATGCTA
AGGGCGAGATCGCGATCGCTCGCCTGTCCATCCGGAAGGCGCGGGAAGCG
GTCAACAGGGACGAGGAAGAAGATAGGTGACGGGGCACGTGGACAAAGCG
GAGGGGCTTTTCGGGGTGTTCAATATCGATGAGGGGGCAGCTACGGCCGC
CGTTTCTCATGCTAAGGGCGAGATCGCGATCGCTCGCCTGTCCATCCGGA
AGGCGCGGGAAGCGGTCAACAGGGACGAGGAAGAAGATAGAAAACGATTG
GAGGCTGAACACGACAAGTGCCTCCGCGACAAGGCGAGGTTGGCGCTCGT
GCAGCTAGAGGAAATGCTCTCCCGCGGGCTAACGTTGATTGAGGGTAACA
GGGAACACCCCGGCATCAAGGCCCAGAAAACGATTGGAGGCTGAACACGA
CAAGTGCCTCCGCGACAAGGCGAGGTTGGCGCTCGTGCAGCTAGAGGAAA
TGCTCTCCCGCGGGCTAACGTTGATTGAGGGTAACAGGGAACACCCCGGC
ATCAAGGCCCAG
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