mRNA_H-paniculata_contig20024.5145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20024.5145.1
Unique NamemRNA_H-paniculata_contig20024.5145.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: D7FXU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 7.320e-21
Identity = 53/69 (76.81%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   13 AAAPRDFDAAAVIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTSLEFDATFTFDDR 219
            AA  R  DA AV+VVDPFSSGALLA+R  VIAEGY CVRV SV DSP+AKLVQEGT LEFDATF  DDR
Sbjct:  138 AAKVRARDAKAVVVVDPFSSGALLAKR--VIAEGYRCVRVFSVMDSPVAKLVQEGTVLEFDATFQLDDR 204
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: A0A835Z961_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z961_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.920e-18
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   46 VIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTSLEFDATFTFDDR 219
            V+VVDPFSSGA+LA+R V  AEG+HC+RVLS  DSP+AKLVQEG  LEFDATF +DDR
Sbjct:  135 VVVVDPFSSGAILARRAV--AEGFHCIRVLSEVDSPVAKLVQEGMVLEFDATFQYDDR 190
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: A0A7S2C9C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9C4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.210e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   25 RDFDAAAVIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTSLEFDATFTFDDR 219
            R F+A  V+VVDPFSSGALLA++  ++A G  CVRVLS  +SP+A LV EGTSL+FDAT   DDR
Sbjct:   83 RKFEA--VVVVDPFSSGALLAEK--IVASGRFCVRVLSEFNSPVATLVSEGTSLQFDATVQHDDR 143
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: A0A7S2RAR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAR7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.820e-12
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   43 AVIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTS-LEFDATFTFDDRQ 222
            AV++VDPFSSGALLA R  V+  G HCVRV S  +SP+A LV EG   ++FDAT   DDRQ
Sbjct:   99 AVVIVDPFSSGALLAGR--VVRTGLHCVRVFSEFNSPVASLVSEGVGQVQFDATVQHDDRQ 157
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: A0A7S0XE07_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE07_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.430e-10
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   43 AVIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTSLEFDATFTFDD 216
            AV+VVDPFS+GA LA    ++  G+ CVRVLS+ DSP+A LVQEG  +EFDAT   +D
Sbjct:   92 AVVVVDPFSTGAHLASE--IVKLGFKCVRVLSIWDSPVAALVQEGVVVEFDATIQHND 147
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: A0A7S1XUT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUT4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.400e-8
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   22 PRDFDAAAVIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTSLEFDAT 201
            P+     AV VVDPFS+GAL+A+R  + +EG+H VRVLS  +SP+A LVQE  S  ++AT
Sbjct:  130 PKPKKEEAVCVVDPFSTGALIAER--LESEGFHVVRVLSEYNSPVADLVQESISCSYEAT 187
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: A0A6H5LB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB88_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.890e-7
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   22 PRDFDAAAVIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTSLEFDATFTFDD 216
            P     AAV+VVDPFSSG++LA R  V+      V V S  DSP+A LVQ+GT+L  D T   DD
Sbjct:  335 PTPLPTAAVVVVDPFSSGSILAAR--VLHRKLRLVMVFSEVDSPVANLVQQGTNLRPDMTIQHDD 397
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BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Match: A0A7R9YE89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE89_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.220e-6
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   46 VIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDSPIAKLVQEGTSLEFDAT 201
            V VVDPFS+GALLA    V   G+H +R+LS  +SP+A LVQE  S  FDAT
Sbjct:  132 VAVVDPFSTGALLAAA--VEQRGFHVIRILSEYNSPVADLVQESISCSFDAT 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20024.5145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FXU1_ECTSI7.320e-2176.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z961_9STRA6.920e-1874.14ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2C9C4_9STRA5.210e-1563.08Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2RAR7_9STRA4.820e-1260.66Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0XE07_9STRA1.430e-1058.62Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A7S1XUT4_9STRA5.400e-853.33Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6H5LB88_9PHAE1.890e-750.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YE89_9STRA1.220e-657.69Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20024contigH-paniculata_contig20024:3415..4214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.9e-18
Seed eggNOG ortholog2880.D7FXU1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-grasp domain
EggNOG OGs2QUGS@2759,COG0439@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.8523977-CDS-H-paniculata_contig20024:3414..35381622929511.8523977-CDS-H-paniculata_contig20024:3414..3538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20024 3415..3538 -
1691480892.950307-CDS-H-paniculata_contig20024:3414..35381691480892.950307-CDS-H-paniculata_contig20024:3414..3538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20024 3415..3538 -
1622929511.8838212-CDS-H-paniculata_contig20024:4116..42141622929511.8838212-CDS-H-paniculata_contig20024:4116..4214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20024 4117..4214 -
1691480892.96146-CDS-H-paniculata_contig20024:4116..42141691480892.96146-CDS-H-paniculata_contig20024:4116..4214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20024 4117..4214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20024.5145.1prot_H-paniculata_contig20024.5145.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20024 3415..4214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20024.5145.1

>prot_H-paniculata_contig20024.5145.1 ID=prot_H-paniculata_contig20024.5145.1|Name=mRNA_H-paniculata_contig20024.5145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MQSGAAAPRDFDAAAVIVVDPFSSGALLAQRRVVIAEGYHCVRVLSVSDS
PIAKLVQEGTSLEFDATFTFDDRQ
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mRNA from alignment at H-paniculata_contig20024:3415..4214-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20024.5145.1 ID=mRNA_H-paniculata_contig20024.5145.1|Name=mRNA_H-paniculata_contig20024.5145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=800bp|location=Sequence derived from alignment at H-paniculata_contig20024:3415..4214- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGCGGAGCTGCGGCGCCCAGGGATTTTGATGCAGCGGCGGTCAT
CGTGGTGGACCCTTTCTCCTCCGGAGCGCTGCTCGCTCAAAGGCGAGTGT
ATGTATATAGTACAGTACGTGTACAGTGTTATTTTCCAGCGTGAAATAGA
GAATAAAAGAAGGCTCGTGAAAACTTCGAACGGTATTAAAGATTTTTTTT
TTTTCCCCCTTTTTTTTATTTCAAATATTGATCTGAGTTTTGAATATGTG
TGCGGGCACATGAAATGAACGATCTCATGTTGTTATTCTCTTACGTATGC
ACTCTACGTACACACGACATCACTTGAAGAACGCCTGGCATGTCATGAGC
CACTTGACGTGTGTGATCCTGATCAACAGGTTGACCCGCTTGTACACCCA
CCCATAATGGTACAATAAGTACAGTACATAAAAAAAAAATGCCTCAACGG
GTCTCCCTAGCCCAGTCGTGAATGGCAGAAACGTTTTCTGTAATAAATGC
ACGTATTTCTCAAGTAACATGTTTCTGCGAACGCGTGTGGCTCTTCTATT
CAATTAGAGCTGTACGCATGTATCCAAATCTCCTCTATGGCACGGCATCA
TGCACGCAAGCTAAATACAATGAACTTCTTCGAGTTTTATACCTTTAACA
CTTGACCCTTGACGCTCACCTTGAAGAGTGATCGCCGAAGGCTACCATTG
CGTCCGAGTGCTGAGCGTCTCCGACTCTCCGATAGCCAAGCTCGTTCAGG
AGGGCACCTCGCTGGAGTTCGACGCAACGTTCACTTTCGACGACAGGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20024:3415..4214-

>mRNA_H-paniculata_contig20024.5145.1 ID=mRNA_H-paniculata_contig20024.5145.1|Name=mRNA_H-paniculata_contig20024.5145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig20024:3415..4214- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGCGGAGCTGCGGCGCCCAGGGATTTTGATGCAGCGGCGGTCAT
CGTGGTGGACCCTTTCTCCTCCGGAGCGCTGCTCGCTCAAAGGCGAGTAT
GCAGAGCGGAGCTGCGGCGCCCAGGGATTTTGATGCAGCGGCGGTCATCG
TGGTGGACCCTTTCTCCTCCGGAGCGCTGCTCGCTCAAAGGCGAGTAGTG
ATCGCCGAAGGCTACCATTGCGTCCGAGTGCTGAGCGTCTCCGACTCTCC
GATAGCCAAGCTCGTTCAGGAGGGCACCTCGCTGGAGTTCGACGCAACGT
TCACTTTCGACGACAGGCAAAGTGATCGCCGAAGGCTACCATTGCGTCCG
AGTGCTGAGCGTCTCCGACTCTCCGATAGCCAAGCTCGTTCAGGAGGGCA
CCTCGCTGGAGTTCGACGCAACGTTCACTTTCGACGACAGGCAA
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