mRNA_H-paniculata_contig20.5122.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20.5122.1
Unique NamemRNA_H-paniculata_contig20.5122.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20.5122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20contigH-paniculata_contig20:28884..31408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size514
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20.5122.1prot_H-paniculata_contig20.5122.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20 28884..29351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929507.9739444-CDS-H-paniculata_contig20:28883..293511622929507.9739444-CDS-H-paniculata_contig20:28883..29351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 28884..29351 -
1691480891.0875435-CDS-H-paniculata_contig20:28883..293511691480891.0875435-CDS-H-paniculata_contig20:28883..29351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 28884..29351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929508.0024421-UTR-H-paniculata_contig20:29351..293661622929508.0024421-UTR-H-paniculata_contig20:29351..29366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 29352..29366 -
1691480891.0985334-UTR-H-paniculata_contig20:29351..293661691480891.0985334-UTR-H-paniculata_contig20:29351..29366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 29352..29366 -
1622929508.0183914-UTR-H-paniculata_contig20:31378..314081622929508.0183914-UTR-H-paniculata_contig20:31378..31408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 31379..31408 -
1691480891.1089725-UTR-H-paniculata_contig20:31378..314081691480891.1089725-UTR-H-paniculata_contig20:31378..31408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 31379..31408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20.5122.1

>prot_H-paniculata_contig20.5122.1 ID=prot_H-paniculata_contig20.5122.1|Name=mRNA_H-paniculata_contig20.5122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MTPTDTNKSTCPSTGEATKHGPIDVEPTDLESSAVAESRRENRICAFENR
LEIAEYSIAIAESVKLWMAYVPWRVNVLWDGTDVLSWLRAEEEVLPWPPE
PETDADNEVPAQAEQCLDDDSIMVGPMPLEACDSGGPRADINSHYLRYNQ
PVPGDE
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mRNA from alignment at H-paniculata_contig20:28884..31408-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20.5122.1 ID=mRNA_H-paniculata_contig20.5122.1|Name=mRNA_H-paniculata_contig20.5122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2525bp|location=Sequence derived from alignment at H-paniculata_contig20:28884..31408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAGGATGGCCATACATTTTGCGTGAAAGGTCAGTGGGGGATATTGGCG
AAGAGGTGTGATGCTCGCGATTCGGAGAACACGTATCAGTGCATCCGTCG
TGTTTGTCAGCAGTCACTGACCACGCTTTTCGCCGGTGGAGACTTGGCTG
ATACAACAGACAGTATCAGAAAGTGTCGGGAGTAGTGAACGTCCTCTGTT
GCTCATATCGGCGTTAGCCTACATCATGTACGAAGCTTCTTACATCTTGT
GAAAGGACAGGAGGTATCGGAGTATGCTCTGGTGTGAGATTCCATTGCCC
GTGCGGATTGCGCCCGATGATTATCCAGATTTAAGAAGAAATTTGGCGGC
AATTGCCGAATTGGAAACTATGTCGCGACCGTGGCGAGAGTCAGCCTTCT
GTGGACCGCATTAAGTGGGTTGATCGATATTTTGCACATGGTGGAGAGAC
GGAAGGACCTTCGAGAGGTGAGGTCCTTTGTGCCGACAGCCAAATCCTCA
CTAACTGAATTAGTAAACTTGCACTAGAGTTACTCCGCGAGAGGATCCCC
GAGTCTGCACGGCTTAGATTTCAGGTGGGCTGCGTAGCCTCAACATGGGT
ACCATAAAGTTATACCGCTGACTTTATACCGTTGCAACTATCACAGCGGG
TTGGTTATTAAGCAAAGTTTAGCGCGACTGAGGTAGATATTCTGAGTCAC
TCCGATGTAATTTGTACAGTAGGTTATGTCCTTTATACACACAATTGACA
CGCGAGTGATGCACTGATACTCCCTATTGAAGCTAGTAGGCCATGCAGTG
CCTATTCTAGAAATCTTGGTACTTGGCCATAATGAGGCGAAGGTGTATGC
CATCTAAACGGTGTCGTGTTAAGCTACTAAGCAGCGCACCCAACAGTCTT
CAACTCCATTCAGAATTCGGTTCACCGGGTGGGCGCGCACGGTTGGTTGT
GGATGAGTTGTGGCAGTGGGAGTAGCAGAGCACCACGATTAACACTCGTT
AGTGTACAGCTCTCTCAGCGTAATATGCTCCAAGCTCTCACAACGGAGTT
AGCAAGACCCTGGGGTATGGCTGGCTGATTAAGTCAAGACACGAGTACCC
TATACGCCCCCCTCCCATGAATTCTCCGGTCGTGACAGTTATACTAATAT
ATCGGTGTAGTCAGACTTACCCTATTCCTCTTTGCCCGTGATTTGTTTTG
CAGTTCACGTCAATACAAACGTTGTTGGGAGGCCGCTATATACGTTAGAA
GAGTAGCGCAAACCTTTGTTGCGTGGACATATGACTGTTCCGAATTACAA
CTTGACTTCGTAGTTTTTGCTTCATCAGTCCGTTGAATTGTGTTCATCTT
TGTATGCATGTTGCCGATATGTATAGAGCAACATGTACATTATACCAGCA
TGTATTATGACCCACAGTGCCGTCAGCGTATGGCAAGGTTCATACAGTCA
GTAGGTGTAGGAAATTACCACGGTGAGGGCATTGTGTAGGTCTACCTTTG
TACCTCGCGAGTTGAATAGGTGTAAGTTGAATGTAACTTTAACACAATCG
TGTGTGTAAAACCTTCTTCAGCGTAATATGTAAAAAACTCAAAATAACAT
CATTCGGTTAACGCCTGATAAAGAGGATTATCAGAATTTCCGGTTAAGCT
TCAAGTATTGTCTATCGTGATGTATTTTGTGTTATTCGAGCATGTCTGTT
TTGAAGGCTTTTGAACCTCCTTTCCGGGTGGTCGGAACGTATACTATGCA
CTTGTGTCGTGTCGGGCCTTGACAGTTCTATCTTTCGAGCAATTGGCTAT
TCATTCCATTCAATCGTTAGTACTGCATTTGGTCATTAGTAGCCGATTCC
CTATACTCACACATGGGCCATGTTTATTTGTAGACCAACAAACTAGCGTT
TTTCACGCGGTAAATATTCAAAACGCTTAAACCGTGGAACGGACGCAAAA
GTCAACGTCTGACTCGTACAGCGTTGCAAACTATCTCCACGGTTTGTTTT
TTGGCCCGCAAAATAATCGTCTACCGTCTCGTGTCTCGACAGGAATCATG
GAACGCAATGACACCCACCGACACGAACAAATCGACCTGTCCCTCTACGG
GAGAAGCAACAAAGCACGGACCTATAGATGTGGAACCAACAGATCTCGAA
TCGAGTGCCGTTGCTGAATCTCGGCGGGAGAATCGAATATGTGCATTCGA
AAATCGACTTGAGATCGCGGAATATTCGATCGCCATCGCTGAGTCTGTAA
AGTTGTGGATGGCGTATGTGCCCTGGCGCGTGAATGTATTGTGGGACGGC
ACGGACGTACTCTCCTGGCTTAGAGCCGAGGAAGAAGTGTTGCCTTGGCC
GCCAGAACCCGAAACAGATGCAGACAACGAAGTGCCTGCACAAGCAGAGC
AATGCCTCGACGACGACAGTATAATGGTGGGCCCGATGCCTCTTGAGGCA
TGTGACAGCGGCGGACCCAGGGCGGATATTAACTCTCACTATCTCAGATA
CAATCAACCGGTTCCGGGTGATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20:28884..31408-

>mRNA_H-paniculata_contig20.5122.1 ID=mRNA_H-paniculata_contig20.5122.1|Name=mRNA_H-paniculata_contig20.5122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig20:28884..31408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACCCACCGACACGAACAAATCGACCTGTCCCTCTACGGGAGAAGC
AACAAAGCACGGACCTATAGATGTGGAACCAACAGATCTCGAATCGAGTG
CCGTTGCTGAATCTCGGCGGGAGAATCGAATATGTGCATTCGAAAATCGA
CTTGAGATCGCGGAATATTCGATCGCCATCGCTGAGTCTGTAAAGTTGTG
GATGGCGTATGTGCCCTGGCGCGTGAATGTATTGTGGGACGGCACGGACG
TACTCTCCTGGCTTAGAGCCGAGGAAGAAGTGTTGCCTTGGCCGCCAGAA
CCCGAAACAGATGCAGACAACGAAGTGCCTGCACAAGCAGAGCAATGCCT
CGACGACGACAGTATAATGGTGGGCCCGATGCCTCTTGAGGCATGTGACA
GCGGCGGACCCAGGGCGGATATTAACTCTCACTATCTCAGATACAATCAA
CCGGTTCCGGGTGATGAGATGACACCCACCGACACGAACAAATCGACCTG
TCCCTCTACGGGAGAAGCAACAAAGCACGGACCTATAGATGTGGAACCAA
CAGATCTCGAATCGAGTGCCGTTGCTGAATCTCGGCGGGAGAATCGAATA
TGTGCATTCGAAAATCGACTTGAGATCGCGGAATATTCGATCGCCATCGC
TGAGTCTGTAAAGTTGTGGATGGCGTATGTGCCCTGGCGCGTGAATGTAT
TGTGGGACGGCACGGACGTACTCTCCTGGCTTAGAGCCGAGGAAGAAGTG
TTGCCTTGGCCGCCAGAACCCGAAACAGATGCAGACAACGAAGTGCCTGC
ACAAGCAGAGCAATGCCTCGACGACGACAGTATAATGGTGGGCCCGATGC
CTCTTGAGGCATGTGACAGCGGCGGACCCAGGGCGGATATTAACTCTCAC
TATCTCAGATACAATCAACCGGTTCCGGGTGATGAG
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