mRNA_H-paniculata_contig19992.5106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19992.5106.1
Unique NamemRNA_H-paniculata_contig19992.5106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19992.5106.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-18
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 YASELPGSHMLAIAAVDEAGNVDPDPAIWRWSVDGRPRTSMDSAPQVYVYV 153
            YASELPGSH +AIAAVDEAGNVDP+PA+W WSVD RPRTS+ SAPQ    V
Sbjct:   27 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVTAV 77
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BLAST of mRNA_H-paniculata_contig19992.5106.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-18
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 YASELPGSHMLAIAAVDEAGNVDPDPAIWRWSVDGRPRTSMDSAPQVYVYV 153
            YASELPGSH +AIAAVDEAGNVDP+PA+W WSVD RPRTS+ SAPQ    V
Sbjct:  358 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVTAV 408
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BLAST of mRNA_H-paniculata_contig19992.5106.1 vs. uniprot
Match: UPI001F0823DD (Ig-like domain-containing protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI001F0823DD)

HSP 1 Score: 48.5 bits (114), Expect = 4.930e-5
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   19 GSHMLAIAAVDEAGNVDPDPAIWRWSVDG-RPRTSMDSAP 135
            GSH L + AVD AGNVDP PA++ W+VD   P T++D+ P
Sbjct:  880 GSHTLQVRAVDAAGNVDPTPAVYTWTVDTVPPDTNIDAGP 919
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19992.5106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K857_9PHAE2.460e-1876.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK9_ECTSI2.460e-1876.47OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI001F0823DD4.930e-555.00Ig-like domain-containing protein n=1 Tax=Pyxidico... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19992contigH-paniculata_contig19992:3434..3604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue7.1e-10
Seed eggNOG ortholog2880.D8LBK9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.4740016-CDS-H-paniculata_contig19992:3433..35771622929505.4740016-CDS-H-paniculata_contig19992:3433..3577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19992 3434..3577 -
1691480890.0961416-CDS-H-paniculata_contig19992:3433..35771691480890.0961416-CDS-H-paniculata_contig19992:3433..3577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19992 3434..3577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.502439-UTR-H-paniculata_contig19992:3577..36041622929505.502439-UTR-H-paniculata_contig19992:3577..3604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19992 3578..3604 -
1691480890.1079762-UTR-H-paniculata_contig19992:3577..36041691480890.1079762-UTR-H-paniculata_contig19992:3577..3604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19992 3578..3604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19992.5106.1prot_H-paniculata_contig19992.5106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19992 3434..3577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19992.5106.1

>prot_H-paniculata_contig19992.5106.1 ID=prot_H-paniculata_contig19992.5106.1|Name=mRNA_H-paniculata_contig19992.5106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MLAIAAVDEAGNVDPDPAIWRWSVDGRPRTSMDSAPQVYVYVCVCEC*
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mRNA from alignment at H-paniculata_contig19992:3434..3604-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19992.5106.1 ID=mRNA_H-paniculata_contig19992.5106.1|Name=mRNA_H-paniculata_contig19992.5106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig19992:3434..3604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGCCTCGGAGTTGCCTGGATCCCACATGCTGGCTATCGCCGCCGTCGA
CGAGGCGGGCAACGTTGATCCTGACCCGGCGATTTGGAGGTGGTCTGTAG
ACGGACGGCCGAGAACCTCCATGGACAGTGCTCCCCAGGTGTATGTGTAT
GTGTGTGTGTGTGAGTGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19992:3434..3604-

>mRNA_H-paniculata_contig19992.5106.1 ID=mRNA_H-paniculata_contig19992.5106.1|Name=mRNA_H-paniculata_contig19992.5106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig19992:3434..3604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGCTATCGCCGCCGTCGACGAGGCGGGCAACGTTGATCCTGACCC
GGCGATTTGGAGGTGGTCTGTAGACGGACGGCCGAGAACCTCCATGGACA
GTGCTCCCCAGGTGTATGTGTATGTGTGTGTGTGTGAGTGTTAAATGCTG
GCTATCGCCGCCGTCGACGAGGCGGGCAACGTTGATCCTGACCCGGCGAT
TTGGAGGTGGTCTGTAGACGGACGGCCGAGAACCTCCATGGACAGTGCTC
CCCAGGTGTATGTGTATGTGTGTGTGTGTGAGTGTTAA
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