mRNA_H-paniculata_contig19898.5082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19898.5082.1
Unique NamemRNA_H-paniculata_contig19898.5082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: UPI001E1E085B (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E085B)

HSP 1 Score: 68.2 bits (165), Expect = 7.010e-12
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   61 LNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVL 261
            + P+ NPL WW+++  ++  +AH+AR VL+V A   PSER FSS+ L++ + RNRLA + ++S++ L
Sbjct:  146 MEPNANPLDWWKLHEREFPKVAHVARSVLSVPATSVPSERIFSSTGLLINKLRNRLASDLVDSIVFL 212          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: A0A1X7SKZ7_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SKZ7_AMPQE)

HSP 1 Score: 63.2 bits (152), Expect = 3.670e-10
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   52 EPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESL 252
            EP LNPDGNPL+WWR N  ++  L+ IAR ++ V     P+ER FS+S +++ + R  L  E ++ L
Sbjct:  104 EPPLNPDGNPLEWWRKNEERFPRLSKIARKLMCVPTTSVPAERVFSTSGMIVNKLRASLKPENVDML 170          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: A0A1X7TAZ1_AMPQE (HECT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TAZ1_AMPQE)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-9
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   52 EPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESL 252
            EP LNPDGNPL+WWR N  ++  L+ IAR ++ V     P+ER FS+S +++ + R  L  E ++ L
Sbjct:   29 EPPLNPDGNPLEWWRKNEERFPRLSKIARKLMCVPTTSVPAERVFSTSGMIVNKLRASLKPENVDML 95          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: UPI000C760D92 (zinc finger BED domain-containing protein 4-like n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000C760D92)

HSP 1 Score: 60.8 bits (146), Expect = 5.960e-9
Identity = 27/70 (38.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   52 EPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVL 261
            E +L  + NPL WWR + + Y  L+ +A+  L+++A   P ER FS + LV++ RRNRL+G +++ ++ L
Sbjct:  207 EDLLPRNDNPLDWWREHKYSYPYLSIVAQEKLSIVATSVPCERIFSKAGLVISDRRNRLSGNKVDKILFL 276          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: A0A8J9UI59_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UI59_BRAAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.100e-9
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   52 EPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVL 261
            EP+L    NPLKWW+     Y  L  +A   L V+A   PSER FS +   +T RRNRL+GE++  L+ L
Sbjct:  434 EPLLQRTENPLKWWQERKSIYPRLYQLAVKKLCVVATSVPSERIFSKAGQTVTDRRNRLSGEKVRQLVFL 503          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: A0A2S2PPI5_SCHGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PPI5_SCHGA)

HSP 1 Score: 59.3 bits (142), Expect = 2.120e-8
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   52 EPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVL 261
            EP++    +PLKWW  N + Y  L  I +    +     PSER FS S  V+T++RNRL  +R+E +I L
Sbjct:  202 EPIIARTNDPLKWWNENKNVYPSLFEIMKRRFCIQGTSVPSERIFSKSGQVVTEKRNRLTSKRVEQIIFL 271          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: A0A1A8HNA6_NOTKU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8HNA6_NOTKU)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-8
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   49 LEPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLI 255
            L P ++PD +PL+WW+ N   +  L+H+A+  L++ A  APSER FS +  V+T  R  L  E ++ LI
Sbjct:    1 LMPEVDPDTDPLQWWKSNKSNFSRLSHLAKKYLSIPATSAPSERLFSVAGGVVTCSRACLKPEAVDRLI 69          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: A0A5A9PBF6_9TELE (Uncharacterized protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PBF6_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 2.910e-8
Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   52 EPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVL 261
            EP+L+   +PL WWR  +  Y +L+ + +  L ++A   PSER FS +  ++++RRNRL+  ++  L+ L
Sbjct:  440 EPLLSRTSDPLAWWRSCSPVYKILSEVMKARLCIVATSVPSERIFSKTGQIISERRNRLSPSKVRELVFL 509          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: A0A2J6SQY4_9HELO (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6SQY4_9HELO)

HSP 1 Score: 55.8 bits (133), Expect = 3.220e-8
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   82 LKWWRVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVLK 264
            L +W+ NA ++  LA IAR  L +LA  APS+RFFS SAL++T+ +NRL     E +  LK
Sbjct:    1 LDYWKSNAARFPALALIARKYLGILASLAPSKRFFSQSALIITKLQNRLNKSTFERITCLK 61          
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Match: M2R1E2_CERS8 (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2R1E2_CERS8)

HSP 1 Score: 54.7 bits (130), Expect = 4.590e-8
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   94 RVNAHKYLVLAHIARCVLAVLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVLKGPW 273
            ++N H + V A +AR  LAVLA    SER FSS+ + +T+RRNRL G+ +E+L VLK  +
Sbjct:    1 QLNGHHFPVWASLARDYLAVLATSVSSERAFSSAGITITKRRNRLKGDIVEALQVLKSAF 60          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19898.5082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1E085B7.010e-1243.28E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
A0A1X7SKZ7_AMPQE3.670e-1043.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A1X7TAZ1_AMPQE1.300e-943.28HECT domain-containing protein n=1 Tax=Amphimedon ... [more]
UPI000C760D925.960e-938.57zinc finger BED domain-containing protein 4-like n... [more]
A0A8J9UI59_BRAAE6.100e-944.29Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A2S2PPI5_SCHGA2.120e-840.00Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A1A8HNA6_NOTKU2.640e-840.58Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A5A9PBF6_9TELE2.910e-835.71Uncharacterized protein n=1 Tax=Triplophysa tibeta... [more]
A0A2J6SQY4_9HELO3.220e-847.54Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
M2R1E2_CERS84.590e-848.33Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19898contigH-paniculata_contig19898:4333..4605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.1
Seed ortholog evalue6.1e-10
Seed eggNOG ortholog7897.ENSLACP00000000614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger BED domain-containing protein
EggNOG OGs39SKR@33154,3BBS9@33208,3CUF3@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.6196501-CDS-H-paniculata_contig19898:4332..46051622929501.6196501-CDS-H-paniculata_contig19898:4332..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19898 4333..4605 +
1691480888.607345-CDS-H-paniculata_contig19898:4332..46051691480888.607345-CDS-H-paniculata_contig19898:4332..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19898 4333..4605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19898.5082.1prot_H-paniculata_contig19898.5082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19898 4333..4605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19898.5082.1

>prot_H-paniculata_contig19898.5082.1 ID=prot_H-paniculata_contig19898.5082.1|Name=mRNA_H-paniculata_contig19898.5082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
DKVQKKNEKTAFFDTSLEPVLNPDGNPLKWWRVNAHKYLVLAHIARCVLA
VLAMFAPSERFFSSSALVMTQRRNRLAGERIESLIVLKGPW
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mRNA from alignment at H-paniculata_contig19898:4333..4605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19898.5082.1 ID=mRNA_H-paniculata_contig19898.5082.1|Name=mRNA_H-paniculata_contig19898.5082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig19898:4333..4605+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAAGGTACAGAAGAAAAACGAAAAGACGGCCTTCTTCGACACCTCCCT TGAGCCTGTCCTGAACCCTGACGGCAACCCGCTGAAGTGGTGGAGGGTCA ACGCCCACAAGTACCTGGTGCTCGCGCACATCGCTCGCTGCGTCCTGGCC GTCCTGGCAATGTTCGCGCCCTCCGAACGATTTTTCTCGTCAAGTGCTCT CGTGATGACGCAAAGGCGGAATAGGCTGGCTGGGGAGCGCATAGAGTCGT TGATAGTTCTGAAGGGGCCGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig19898:4333..4605+

>mRNA_H-paniculata_contig19898.5082.1 ID=mRNA_H-paniculata_contig19898.5082.1|Name=mRNA_H-paniculata_contig19898.5082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig19898:4333..4605+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAAGGTACAGAAGAAAAACGAAAAGACGGCCTTCTTCGACACCTCCCT
TGAGCCTGTCCTGAACCCTGACGGCAACCCGCTGAAGTGGTGGAGGGTCA
ACGCCCACAAGTACCTGGTGCTCGCGCACATCGCTCGCTGCGTCCTGGCC
GTCCTGGCAATGTTCGCGCCCTCCGAACGATTTTTCTCGTCAAGTGCTCT
CGTGATGACGCAAAGGCGGAATAGGCTGGCTGGGGAGCGCATAGAGTCGT
TGATAGTTCTGAAGGGGCCGTGGGACAAGGTACAGAAGAAAAACGAAAAG
ACGGCCTTCTTCGACACCTCCCTTGAGCCTGTCCTGAACCCTGACGGCAA
CCCGCTGAAGTGGTGGAGGGTCAACGCCCACAAGTACCTGGTGCTCGCGC
ACATCGCTCGCTGCGTCCTGGCCGTCCTGGCAATGTTCGCGCCCTCCGAA
CGATTTTTCTCGTCAAGTGCTCTCGTGATGACGCAAAGGCGGAATAGGCT
GGCTGGGGAGCGCATAGAGTCGTTGATAGTTCTGAAGGGGCCGTGG
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