mRNA_H-paniculata_contig1987.5073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1987.5073.1
Unique NamemRNA_H-paniculata_contig1987.5073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1987.5073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1987contigH-paniculata_contig1987:15024..15660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size637
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1987.5073.1prot_H-paniculata_contig1987.5073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1987 15133..15468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.4646301-UTR-H-paniculata_contig1987:15023..151321622929500.4646301-UTR-H-paniculata_contig1987:15023..15132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1987 15024..15132 +
1691480888.1411684-UTR-H-paniculata_contig1987:15023..151321691480888.1411684-UTR-H-paniculata_contig1987:15023..15132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1987 15024..15132 +
1622929500.497451-UTR-H-paniculata_contig1987:15468..156601622929500.497451-UTR-H-paniculata_contig1987:15468..15660Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1987 15469..15660 +
1691480888.1604877-UTR-H-paniculata_contig1987:15468..156601691480888.1604877-UTR-H-paniculata_contig1987:15468..15660Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1987 15469..15660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.4823554-CDS-H-paniculata_contig1987:15132..154681622929500.4823554-CDS-H-paniculata_contig1987:15132..15468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1987 15133..15468 +
1691480888.1497061-CDS-H-paniculata_contig1987:15132..154681691480888.1497061-CDS-H-paniculata_contig1987:15132..15468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1987 15133..15468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1987.5073.1

>prot_H-paniculata_contig1987.5073.1 ID=prot_H-paniculata_contig1987.5073.1|Name=mRNA_H-paniculata_contig1987.5073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MRSHHSRALCHLEAKKSTQTSFSSNNRFLCLDEQVLSFNIQYPKLIFVLR
QGLTCIMREIQERIPGPEKQENNLFPAVGMIFGLVWIRVGLTATVCTCQH
YRCSGRTSAAR*
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mRNA from alignment at H-paniculata_contig1987:15024..15660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1987.5073.1 ID=mRNA_H-paniculata_contig1987.5073.1|Name=mRNA_H-paniculata_contig1987.5073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=637bp|location=Sequence derived from alignment at H-paniculata_contig1987:15024..15660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTTTTGCATCTACTGTACGATCGATGGTACTGCCGCAACTAAATTACT
GCAACAACACTGTCTAGACCACCCTTTCGTGTGGCGGCACATGTACACTC
CGGGTGGCAATGCGTTCCCACCATTCTAGGGCCCTGTGTCATCTCGAAGC
AAAGAAATCGACCCAGACTTCATTTTCGAGCAATAATCGATTTTTGTGCC
TTGATGAGCAAGTCCTGTCGTTCAACATACAGTACCCCAAATTGATTTTC
GTGCTTCGTCAGGGCCTGACATGCATCATGAGGGAAATTCAGGAAAGAAT
CCCGGGCCCTGAAAAACAAGAAAACAATTTATTTCCTGCTGTTGGGATGA
TCTTTGGTCTTGTCTGGATAAGAGTCGGGCTAACAGCCACCGTTTGTACG
TGCCAACATTATCGGTGCAGTGGAAGGACCTCGGCCGCGAGGTGAGTTCG
CCAGACATGAGGGAACAAAATTGGACAGCATCATGACCGACCACGTTTAG
AACTCCCAAGCTAGCATGTCTGGATGAAAGTGAAATGACTGGGCGAAATA
GTGCCAAGTGATTGTGATGGGATCTTCCGTCTCCCTCTCGAACATCTCTT
ATTTTCCTTCTCCTGTCGCAAATCAGTTCACCTTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig1987:15024..15660+

>mRNA_H-paniculata_contig1987.5073.1 ID=mRNA_H-paniculata_contig1987.5073.1|Name=mRNA_H-paniculata_contig1987.5073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig1987:15024..15660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTCCCACCATTCTAGGGCCCTGTGTCATCTCGAAGCAAAGAAATC
GACCCAGACTTCATTTTCGAGCAATAATCGATTTTTGTGCCTTGATGAGC
AAGTCCTGTCGTTCAACATACAGTACCCCAAATTGATTTTCGTGCTTCGT
CAGGGCCTGACATGCATCATGAGGGAAATTCAGGAAAGAATCCCGGGCCC
TGAAAAACAAGAAAACAATTTATTTCCTGCTGTTGGGATGATCTTTGGTC
TTGTCTGGATAAGAGTCGGGCTAACAGCCACCGTTTGTACGTGCCAACAT
TATCGGTGCAGTGGAAGGACCTCGGCCGCGAGGTGAATGCGTTCCCACCA
TTCTAGGGCCCTGTGTCATCTCGAAGCAAAGAAATCGACCCAGACTTCAT
TTTCGAGCAATAATCGATTTTTGTGCCTTGATGAGCAAGTCCTGTCGTTC
AACATACAGTACCCCAAATTGATTTTCGTGCTTCGTCAGGGCCTGACATG
CATCATGAGGGAAATTCAGGAAAGAATCCCGGGCCCTGAAAAACAAGAAA
ACAATTTATTTCCTGCTGTTGGGATGATCTTTGGTCTTGTCTGGATAAGA
GTCGGGCTAACAGCCACCGTTTGTACGTGCCAACATTATCGGTGCAGTGG
AAGGACCTCGGCCGCGAGGTGA
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