mRNA_H-paniculata_contig1985.5067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1985.5067.1
Unique NamemRNA_H-paniculata_contig1985.5067.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: D7FV73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV73_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.870e-60
Identity = 101/137 (73.72%), Postives = 117/137 (85.40%), Query Frame = 2 
Query:  359 LGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALLQLSDEEE 769
            LGKG DL+ DDPD+R K VI  YD  GF++ DGVDVRGS+I +PNS+ LW PK+  +IT+ESLR+VELV PKIDL+++GVGERMT RLDP LV H+ SKGIRVEQ+DTVNACSTFNVLNAEDRRVAAALLQLS EEE
Sbjct:   71 LGKGFDLMEDDPDSRKKVVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWQPKRPSDITVESLRMVELVIPKIDLIIVGVGERMTARLDPVLVKHLASKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLSPEEE 207
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A067CV35_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CV35_SAPPC)

HSP 1 Score: 125 bits (315), Expect = 6.580e-31
Identity = 61/130 (46.92%), Postives = 91/130 (70.00%), Query Frame = 2 
Query:  359 LGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALL 748
            L  G D+  +      K  I+ YDD GF + D V++RGS+  LPN   +W P+  + ITIESL V  +  P I++L++G G+R+ ++L+P+LV++++S GI VE LD+ NAC+TFN+LNAEDR+VAAA+L
Sbjct:   22 LQYGHDMHKEMMTGTSKVSISEYDDGGFVVND-VNMRGSVALLPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGKRIAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAIL 150
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A1V9YKK9_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKK9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.680e-30
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 2 
Query:  359 LGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALL 748
            L  G D+  +      K  IA YDD GF + D V++RGSI  LP+   +W P   E IT+ESL +  +  P I++L++G G+R+  +LDP LV++++S GI VE LD+ NAC+TFN+LNAEDR+VAAA+L
Sbjct:   20 LQYGHDMHKEMMTGTSKVSIAEYDDGGFVVND-VNMRGSIALLPSIAMMWKPNTMEEITVESLNIFTVANPPIEILVLGCGKRIARQLDPKLVEYLKSHGIVVEYLDSFNACATFNILNAEDRKVAAAIL 148
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A835YSB6_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.280e-29
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = 2 
Query:  359 LGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALLQLSDEEEP 772
            + KG D+LS +  +  K VI  YD  GF++   V+ R SI+A P S+ LWAP+ F+ IT+ESL ++ L  PK D+LL+G G     RLDP ++ + +  GIRV+ +DT NA +TFNVLN+EDR V AALL+L   + P
Sbjct:   56 MRKGFDVLSSESGS--KCVITGYDPHGFDV-GRVNARSSILAFPGSFLLWAPRSFDEITLESLELIALTEPKPDVLLVGSGRVFNMRLDPQIMAYFKKHGIRVDVMDTRNAAATFNVLNSEDRLVVAALLKLDPHDPP 190
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A7S3YDW4_HETAK (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDW4_HETAK)

HSP 1 Score: 122 bits (305), Expect = 1.160e-28
Identity = 58/135 (42.96%), Postives = 90/135 (66.67%), Query Frame = 2 
Query:  359 LGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALLQLSDE 763
            LGKG D+L+D  + + K VI  YD WGF +  GV V G ++A P+ Y LW P KF ++++E+L+ V +++PKI++L++G G  +    D  +    + +GI +E ++T+NAC+TFN+L AE R VAAALL +  E
Sbjct:   60 LGKGFDILADYDEMQSKTVIEGYDSWGFTIK-GVRVEGGVLAFPSHYLLWRPTKFSHLSLEALQPVAIIKPKIEILVLGCGPTIPTLPDREIYTFFKKRGISLEVMNTINACATFNILCAEGRPVAAALLPIDPE 193
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: K8Z3H4_NANGC (Nadh dehydrogenase (Fragment) n=4 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z3H4_NANGC)

HSP 1 Score: 121 bits (304), Expect = 1.180e-28
Identity = 72/160 (45.00%), Postives = 100/160 (62.50%), Query Frame = 2 
Query:  290 PGEDPALFSGKADDEESKPQA---PNLGKGQDLLS---DDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTER-LDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALL 748
            P   PAL+  K      + Q+    +LGKG D+L+   ++   R +  +  YD  GFE+ D V+ RGSI+ALP + FLW PKK E IT ESL  + +V+P I++L+IG GE +  R L    +  + + G+ VE +DT +ACSTFN+LN EDRRVAAALL
Sbjct:   42 PPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRD-VNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALL 200
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A6G0XVP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVP0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.720e-28
Identity = 59/126 (46.83%), Postives = 86/126 (68.25%), Query Frame = 2 
Query:  371 QDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALL 748
            Q+++ D P    K  I  YDD GF + + V++RG+I   P    LW PK  + IT ESL V  +  P +++L++G G+R+   LDP+LVD+++S GI VE +D+ NAC+TFN+LNAEDR+VAAA+L
Sbjct:   27 QEMMMDSP----KVAITEYDDGGFVVNE-VNMRGAIALFPEIAMLWKPKTMDEITKESLTVFTVANPPVEILVLGCGKRIPRLLDPSLVDYLKSHGIVVEYVDSFNACATFNILNAEDRKVAAAIL 147
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A8K1C5C2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5C2_PYTOL)

HSP 1 Score: 118 bits (295), Expect = 7.060e-28
Identity = 57/134 (42.54%), Postives = 85/134 (63.43%), Query Frame = 2 
Query:  347 QAPNLGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALL 748
            Q  ++  G D+  +  +   K  +  YDD GF + D V++RG ++  P    LW PK+FE IT ESL +     P +++L++G G R++ +LDP L + ++  GI VE  D+ NACSTFN+LNAEDR+VAAA+L
Sbjct:   29 QRRDINYGHDMHKEMLNGTAKISVTEYDDGGFVVND-VNLRGGVVLFPEIAMLWKPKRFEEITKESLELFTFANPPVEILVLGCGARLSRQLDPELAEFLKVNGIVVEYSDSANACSTFNILNAEDRKVAAAIL 161
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A2D4BWQ8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWQ8_PYTIN)

HSP 1 Score: 117 bits (294), Expect = 7.400e-28
Identity = 56/134 (41.79%), Postives = 89/134 (66.42%), Query Frame = 2 
Query:  347 QAPNLGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALL 748
            Q  ++  G D+  +  +   K  +  YD+ GF + D V++RG +  LP+   LW P++FE IT ESL V  +  P +++L++G G ++  +LDP++ + ++  GI VE LD+VNAC+TFN+LNAEDR+VAAA+L
Sbjct:   20 QRRSINYGHDMHKEMLNGTTKISVTEYDEGGFVVND-VNLRGGVALLPDIAMLWKPRRFEEITKESLEVFTIANPPVEILILGCGAKIQHQLDPSIKEFLKVNGIVVEYLDSVNACATFNILNAEDRKVAAAIL 152
[Close]
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Match: A0A7S1UI11_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI11_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.370e-27
Identity = 56/132 (42.42%), Postives = 89/132 (67.42%), Query Frame = 2 
Query:  359 LGKGQDLLSDDPDARPKAVIAAYDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPKIDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAEDRRVAAALLQL 754
            +G+G D++S   +   K  +  ++D GF +   ++++ S++ LPNS+FLW P+  + IT+ESL +  L+ PKI++L+IG GER  E L P L+ + + KGI VE + T +A +T+NVL +EDR VAAALL +
Sbjct:   43 IGRGHDIMSGVNEGTMKITVDGFEDEGF-IIGSINIKSSVLLLPNSFFLWKPRTVDEITVESLLLPTLITPKIEMLIIGKGERNVEPLAPELLRYFKEKGIVVEHMSTSHALATYNVLTSEDRNVAAALLTI 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1985.5067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV73_ECTSI1.870e-6073.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067CV35_SAPPC6.580e-3146.92Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YKK9_9STRA1.680e-3047.69NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A835YSB6_9STRA1.280e-2947.10NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3YDW4_HETAK1.160e-2842.96NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
K8Z3H4_NANGC1.180e-2845.00Nadh dehydrogenase (Fragment) n=4 Tax=Monodopsidac... [more]
A0A6G0XVP0_9STRA1.720e-2846.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1C5C2_PYTOL7.060e-2842.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BWQ8_PYTIN7.400e-2841.79Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S1UI11_9STRA7.370e-2742.42Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1985contigH-paniculata_contig1985:3685..7658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.5
Seed ortholog evalue4.3e-50
Seed eggNOG ortholog2880.D7FV73
Preferred nameNDUFAF3
KEGG rclassRC00002,RC00015
KEGG koko:K00873,ko:K09008,ko:K09228,ko:K14792,ko:K17770
KEGG TC3.A.8.1
KEGG ReactionR00200,R00430,R01138,R01858,R02320
KEGG Pathwayko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04714,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04714,map04922,map04930,map05165,map05203,map05230
KEGG ModuleM00001,M00002,M00049,M00050
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0033108,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG3363@1,KOG3363@2759
Ec32 ortholog descriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
Ec32 orthologEc-12_007300.1
EC2.7.1.40
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03000,ko03009,ko03029,ko04131,ko04147
Exons5
Model size1320
Cds size567
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929499.9236493-UTR-H-paniculata_contig1985:3684..39421622929499.9236493-UTR-H-paniculata_contig1985:3684..3942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 3685..3942 +
1691480887.847604-UTR-H-paniculata_contig1985:3684..39421691480887.847604-UTR-H-paniculata_contig1985:3684..3942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 3685..3942 +
1622929499.9414446-UTR-H-paniculata_contig1985:4424..44401622929499.9414446-UTR-H-paniculata_contig1985:4424..4440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 4425..4440 +
1691480887.8617992-UTR-H-paniculata_contig1985:4424..44401691480887.8617992-UTR-H-paniculata_contig1985:4424..4440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 4425..4440 +
1622929500.0419893-UTR-H-paniculata_contig1985:7179..76581622929500.0419893-UTR-H-paniculata_contig1985:7179..7658Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 7180..7658 +
1691480887.9327183-UTR-H-paniculata_contig1985:7179..76581691480887.9327183-UTR-H-paniculata_contig1985:7179..7658Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 7180..7658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929499.9540083-CDS-H-paniculata_contig1985:4440..45891622929499.9540083-CDS-H-paniculata_contig1985:4440..4589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 4441..4589 +
1691480887.8715587-CDS-H-paniculata_contig1985:4440..45891691480887.8715587-CDS-H-paniculata_contig1985:4440..4589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 4441..4589 +
1622929499.9678779-CDS-H-paniculata_contig1985:5510..56651622929499.9678779-CDS-H-paniculata_contig1985:5510..5665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 5511..5665 +
1691480887.8816683-CDS-H-paniculata_contig1985:5510..56651691480887.8816683-CDS-H-paniculata_contig1985:5510..5665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 5511..5665 +
1622929500.0065887-CDS-H-paniculata_contig1985:6084..61881622929500.0065887-CDS-H-paniculata_contig1985:6084..6188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 6085..6188 +
1691480887.8993397-CDS-H-paniculata_contig1985:6084..61881691480887.8993397-CDS-H-paniculata_contig1985:6084..6188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 6085..6188 +
1622929500.022392-CDS-H-paniculata_contig1985:7020..71791622929500.022392-CDS-H-paniculata_contig1985:7020..7179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 7021..7179 +
1691480887.9208052-CDS-H-paniculata_contig1985:7020..71791691480887.9208052-CDS-H-paniculata_contig1985:7020..7179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 7021..7179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1985.5067.1prot_H-paniculata_contig1985.5067.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1985 4441..7179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1985.5067.1

>prot_H-paniculata_contig1985.5067.1 ID=prot_H-paniculata_contig1985.5067.1|Name=mRNA_H-paniculata_contig1985.5067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
MRTRRPGEDPALFSGKADDEESKPQAPNLGKGQDLLSDDPDARPKAVIAA
YDDWGFEMTDGVDVRGSIIALPNSYFLWAPKKFENITIESLRVVELVRPK
IDLLLIGVGERMTERLDPALVDHIRSKGIRVEQLDTVNACSTFNVLNAED
RRVAAALLQLSDEEEPQAVTGPEIDVTDDSSSDRNSSK*
back to top

mRNA from alignment at H-paniculata_contig1985:3685..7658+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1985.5067.1 ID=mRNA_H-paniculata_contig1985.5067.1|Name=mRNA_H-paniculata_contig1985.5067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3974bp|location=Sequence derived from alignment at H-paniculata_contig1985:3685..7658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGGTTCTGCTGCCGATGTAGCTGCTGCGCACTTGTTTCGAAGATATT
TTCGTCAGCCAGGTAGTGTTGTTTCCTTGACTGCAACCCAAGAACACATC
ACCTTGCCGTTGTCAAAAACATCAGCGAGAGGGTTGTCAACTTTGCCGAC
TGCATCCCGGTCAACACCATCAACATCTCCCATTGTTACTATCATTGCTC
CAGGTTCTAGCAGTGGGCGTGGAGTTGGGGATGGATTGCACGTATTGAGG
TGGAGAAGGTGTGTATGTTCAATTTTTGGTGCAATACATGAATGAACGCT
GTCAAAATTCCTGCAACGACACGGACAGTTCTTGTCATGCACCACTACTG
CTGCTGTCACAGTCACAGCCTCGCCTCGCTGGACATCGCTGATGACTGCT
TCGTTCCACAGCCATCAGGATTGAGAAACAACTCAGAACTTCTGTCTTAC
GTATTTGATATACTGAACAGTAGTTAATGTACTCCACTGCACTGTACGGC
GGTATTGTACCATGTAGATAGTGGAGAGTTCCGTGCACAGGTAGGTGGTC
AAACAAACCGTCACATCAACAGATCGCAGGTAGCTTCGTCTTCGCATATT
GGTATCTGCGTGTAGAGGCCAATATGAATTTTAGTTTTCACTCATCGTTG
GCCAAAGCTACACACTGGTTCGAGAAGTCCATCATCCACATCACAAGAGT
ATAAACCCACCTACCCCTCCTCAATTTATTCAAACTACAGTTTATCGCAG
CGTGGCATGAGGACAAGGCGTCCAGGAGAAGACCCCGCTCTCTTCTCGGG
TAAAGCAGATGACGAGGAGAGTAAGCCGCAGGCCCCGAACCTTGGAAAGG
GTCAAGATCTCCTATCGGATGACCCGGACGCCAGGCCCAAGGCCGTCATT
GCTGCGTAAGAAAATGAAACGGACGAAGAATCGAGTTTGTTGTGCTCCAG
GAGCTGTCGCGTCCTAGGCCGGCGTCGTTCTACTGATTTCTTTCAAAGAT
ACACTCCTGTTGGGCGTAGTCGTTAGCAGTTAGCCCGCGCTGGGTGAGCA
AAAGTTGTCGCAGTTTTTCATGTATTTATGTCGGTCAACACCCGACGTAC
CAGGAACCAAGCATTGCCCGCCAACAGCGACGTGTTGACTTCCGTAGTGC
TAGATTTTCCTAACCAACGTTGTTTCACTGCACGACTTAGTCCCTACGAC
TATCGAGTTCTGACGTTGTCTAAACTCCATTATAAAATTCGTTGTTGGGG
TGTTGTGTTGGCCTCTGCGGCTTCCGATATGGTATCGTTGGCAACGATCA
ACATCTGAATTGTCGACGAGGTAAACTTCGATTTTGTCGTGTGGAAGAAC
AGCCATTTTTTTGTGTACACTGGCTCGGCCAAAGGAGGGGTCACGTCGGC
GACGATAACCTTGTTATGCGATTTCCTGTTTCGGCTAACTAAATGCCCAC
GTAAACATGACTGAATACACAGAAGTTCGCTACTGCCTTGGGAAACTTAC
CCTACCCAAGCACCCACCAGTACCAGAGTGACCAAGATCGAGATACAAAT
AGAGCATCAGTGGTACAGTAAGCCGCCGAATCAACGGCAGGTACACATGT
ATACGTTGGCCAAGAGGGAGGCAACACACGACAATAAAGCAAACAATTAT
GCGTAATCAGGCAATCACACTTTTTGTCATCAGCTCTCGCGGAGATTCGG
TAGGAATGGACTGGATGTTCGTGTCAACAGCTCCATCCCAATGTTAGATA
CCTGTCTGAAATAGCAACCATTTAGCAAAGTCTTCCTTTCGCACGTCATG
TTGGCCTCCAATTGTGATCATGTCAGGTACGATGACTGGGGTTTCGAAAT
GACCGACGGCGTCGATGTGCGAGGCTCGATAATTGCCTTGCCCAATAGTT
ACTTCTTGTGGGCGCCCAAGAAATTCGAGAACATCACGATAGAGAGCCTC
CGCGTCGTGGAGCTCGTTCGGCCCAAAATAGGTGAGATATGAGATGTCGC
GATCAGTGACGGCCCATTAACTCCAACCATTTTATGATACTAAACGATGA
CTAGCATTCTTCAAGAAGAGAAAGGTGCACTCTTTTGTTCCACCTTTTTT
TTTTTTGTAAAAAATGAACATGTTGTAGCTTTTAAAGGAGAGGTTTTCCA
AATTGGGGGGGGGGCAAATTAACACGTTGAATGTGCATTTGTGGTAAATG
CCGTCAATTGAACGCTTCGCTGGCGGCTGTGAAACCTTGGTAGCGTTGTT
CTTTGCCGATGATGGGTATTGCGAGGCTATAAGAAACTCCCCGGATAGGA
TGATTTTCCGTTGTAGTAGTTGATGGTGATCGCATTTTTGTCCGTTTGCG
TACGTTCCGCTATACCATGTTCTCCTTTCCGTGTTGGCAAAATGTCCCAG
ACCTGCTCTTGATTGGGGTGGGTGAGAGGATGACAGAGAGACTTGACCCT
GCCCTAGTGGACCATATTCGGTCGAAGGGTATCAGGGTGGAGCAACTGGA
TACGGTGAGAGACGAAGAGATCAGTCGCAATCCGTTGAAGAAAGATTTCA
TCCCCCAGATAAATAGCAACACTTGGCGTATTCGCCACGAAAATTAGTTA
GTATTCGCCTGAGGTGCAGAATAAGCCCACAGATACAATGAAGTATCCAC
CCCTTATAATATGATTTACGAGTACTATTAGCAGTTATGGATGGTCCAGA
GCATATACAATCCACGAGCTCATTCTGAAACTCAGGCGAATACCTTTTCA
TTTTTTTGGCGAATACGCCAAGTATTCGTATTTGTCTGCGGTGTGAAATC
TTTCATCAAGAGGAATTCCCAGATGCGGTGAAGACAACAGGTTTGCTGTA
AAATACTTGGGGGACATGAATAAGGAAGAATCCGCCGCATGTATATGGGC
AGGACACGGCACGTTGTGATTTGAGACATTTAATGATGCGGTCCCGGATA
TCATACAGATGTGTACATGCCTTAGGTAAAATGTCCAAACGACTGCGTGT
GTGCAAATAGAAACTATTTATCACGATCCCGACGCGCGTCTGCTTCGCAT
TCACTTCCGACTCCCTCTGCCCGCTGTCCGCTGTTCGGAATATTGGTCTT
ATGGCCCATCATGGTTTGGCGTTTATTCCATCACCATGCAATTAACTGTT
TGCCTAGTTTTTCGAAAATGGCGACATGGCGAAACTTGGGTGTCATTTTT
GCATGTTTTACCTTCCAGTAACTGTAATTCGATCCGAGTGAAAAAACATG
GATATTCGATAAATACCCTTCCGTTCATGTTCGACATTTTTTCAGAATTG
GAAGTCAACATGTTGCTCTTGTTATTCTCGGAACAGGTTAACGCGTGTTC
CACGTTTAATGTTCTCAACGCCGAGGATCGAAGAGTGGCAGCTGCTCTGC
TACAGCTCTCGGACGAAGAAGAGCCGCAAGCGGTTACTGGGCCCGAAATT
GATGTGACTGATGACAGCAGCAGCGATAGGAATAGCAGCAAATGACGATT
GCGAAAAATTACAATACCCTCGCCGCGTCGTAGTGGCGTGATAATTGCCG
TTTTCATGAGTTGATTTGGTGCATGTGTCTTCGTGCAAAGGAAGTGGCTT
GCGAAGAAATACGTACTCCAGCAAATGGTAAGTGTTTACGAGGACAGTTT
TGTGCATGGCATCTTGTTTCCTCATGTTGAACAACAGAAGAGCAAGAACA
CACAATATTGCATAATTTGTTCTCAAGATGTCGCCCAAAACATAGTAAGG
TGTGGACTGAGTGCTGCTGTGATGATATCGCTGCAATCTGCCCCTGCTCG
CGCTACCCACGTGATATAGATAGCGTGGAACTTTGATGTGGGGCTGTTGC
CAGCGTGTGCGTCGAAAAGAGGTACTGGGTGATGGACACGGGGCATCCCA
CCATTTGACAGGCGTCCCCGACCTACGCACCTATTTATAGTAGTATCGAG
GTCTCGTGCTGTTTTTGTCGATCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1985:3685..7658+

>mRNA_H-paniculata_contig1985.5067.1 ID=mRNA_H-paniculata_contig1985.5067.1|Name=mRNA_H-paniculata_contig1985.5067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig1985:3685..7658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGACAAGGCGTCCAGGAGAAGACCCCGCTCTCTTCTCGGGTAAAGC
AGATGACGAGGAGAGTAAGCCGCAGGCCCCGAACCTTGGAAAGGGTCAAG
ATCTCCTATCGGATGACCCGGACGCCAGGCCCAAGGCCGTCATTGCTGCA
TGAGGACAAGGCGTCCAGGAGAAGACCCCGCTCTCTTCTCGGGTAAAGCA
GATGACGAGGAGAGTAAGCCGCAGGCCCCGAACCTTGGAAAGGGTCAAGA
TCTCCTATCGGATGACCCGGACGCCAGGCCCAAGGCCGTCATTGCTGCGT
ACGATGACTGGGGTTTCGAAATGACCGACGGCGTCGATGTGCGAGGCTCG
ATAATTGCCTTGCCCAATAGTTACTTCTTGTGGGCGCCCAAGAAATTCGA
GAACATCACGATAGAGAGCCTCCGCGTCGTGGAGCTCGTTCGGCCCAAAA
TAGGTACGATGACTGGGGTTTCGAAATGACCGACGGCGTCGATGTGCGAG
GCTCGATAATTGCCTTGCCCAATAGTTACTTCTTGTGGGCGCCCAAGAAA
TTCGAGAACATCACGATAGAGAGCCTCCGCGTCGTGGAGCTCGTTCGGCC
CAAAATAGACCTGCTCTTGATTGGGGTGGGTGAGAGGATGACAGAGAGAC
TTGACCCTGCCCTAGTGGACCATATTCGGTCGAAGGGTATCAGGGTGGAG
CAACTGGATACGACCTGCTCTTGATTGGGGTGGGTGAGAGGATGACAGAG
AGACTTGACCCTGCCCTAGTGGACCATATTCGGTCGAAGGGTATCAGGGT
GGAGCAACTGGATACGGTTAACGCGTGTTCCACGTTTAATGTTCTCAACG
CCGAGGATCGAAGAGTGGCAGCTGCTCTGCTACAGCTCTCGGACGAAGAA
GAGCCGCAAGCGGTTACTGGGCCCGAAATTGATGTGACTGATGACAGCAG
CAGCGATAGGAATAGCAGCAAATGAGTTAACGCGTGTTCCACGTTTAATG
TTCTCAACGCCGAGGATCGAAGAGTGGCAGCTGCTCTGCTACAGCTCTCG
GACGAAGAAGAGCCGCAAGCGGTTACTGGGCCCGAAATTGATGTGACTGA
TGACAGCAGCAGCGATAGGAATAGCAGCAAATGA
back to top