prot_H-paniculata_contig1982.5055.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1982.5055.1
Unique Nameprot_H-paniculata_contig1982.5055.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length499
Homology
BLAST of mRNA_H-paniculata_contig1982.5055.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 9.110e-48
Identity = 172/525 (32.76%), Postives = 230/525 (43.81%), Query Frame = 0
Query:   47 QPSKSTSRAIWHEDLAIFEVVKPRGDALRSMGSAWGGRTILHAEEGLWLVERGLLAVD-YLPPPXXXXXXXXXXXXATTA---GRDPPT------------------------HSAASNTVGGSDGF----------------PKADARLEAAGSPGRGGHALT-EGRFSDGSLASECSQDIGRQG----------QSLEHSGAVVS--GVGGLVKVVE-SGSLFVPTGLLRE-TLVRARVPWECYRAYAELKRRSYVVRRRPEDAVEQERCTPRAAPLSWFGAKASQHDTDTFGIENVSTTDYPRGDGGGXXXXXRSNRTSNDTFRRLPVTFHAYAAPN---SNFRKRDPGVPDFWVIVCRYEDRMPTHAALAALAKRAKNCATRAVLNTGATQSLGKGNRLTRKGDKREAGKTSSSPRAPNSLSNLVASCPAAVDIESGDSEEAG-----------KGERENVPINESSMSE-----EATGEALGCGELGFG-----CKFAGIKLAAVTGEGGVHFFDVGVHD 488
            +P + T  A+WHE+LA+FEV++PRGD+LRSMG+ W  R +LHAEEGLWLVERG+LAV  + P P            A  +   GR                            H    N  GG +G                 P+A+       SP   G  LT E + S   +AS  +   G+ G          +  + +G   S  G G   +VV  + +L V    L E  L RA VPWECYR YAELKRRSYVVRR+PED V  +   PRAAPLSWF    +   ++   I   + T  P                       LPVTFH Y+ P+   S+FRKRDPG PD  V+VCR+ D MP H +L AL +   N   +  ++    Q   +G   +  G   + G   ++P   +    +  S   +  + SG   E+G           K +   +P  +  +         T E  G   L F          GIKLA V+GE  V  FDVG+HD
Sbjct:   34 RPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAEL------SPIDSGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSPSSS--------------------LPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQ---QWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSLLDEDRQKRQARTLPDQKKGLDGGRTRGRLTTEGSGGRTLAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHD 529          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1982.5055.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI9.110e-4832.76tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 49..102
e-value: 4.6E-10
score: 39.5
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 5..365

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1982contigH-paniculata_contig1982:1288..7704 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1982.5055.1mRNA_H-paniculata_contig1982.5055.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1982 803..7810 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1982.5055.1 ID=prot_H-paniculata_contig1982.5055.1|Name=mRNA_H-paniculata_contig1982.5055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=499bp
MASEDIHLSHDVMATALSGKSKTATTKKSRTTGRVPPTRETGLRQQQPSK
STSRAIWHEDLAIFEVVKPRGDALRSMGSAWGGRTILHAEEGLWLVERGL
LAVDYLPPPPSPSSTLTADADATTAGRDPPTHSAASNTVGGSDGFPKADA
RLEAAGSPGRGGHALTEGRFSDGSLASECSQDIGRQGQSLEHSGAVVSGV
GGLVKVVESGSLFVPTGLLRETLVRARVPWECYRAYAELKRRSYVVRRRP
EDAVEQERCTPRAAPLSWFGAKASQHDTDTFGIENVSTTDYPRGDGGGGG
NGGRSNRTSNDTFRRLPVTFHAYAAPNSNFRKRDPGVPDFWVIVCRYEDR
MPTHAALAALAKRAKNCATRAVLNTGATQSLGKGNRLTRKGDKREAGKTS
SSPRAPNSLSNLVASCPAAVDIESGDSEEAGKGERENVPINESSMSEEAT
GEALGCGELGFGCKFAGIKLAAVTGEGGVHFFDVGVHDDAMDIRGWPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024336tRNA_splic_suSen54_N
IPR024337tRNA_splic_suSen54