mRNA_H-paniculata_contig19678.5005.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19678.5005.1
Unique NamemRNA_H-paniculata_contig19678.5005.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A329RBX0_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RBX0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.110e-27
Identity = 88/303 (29.04%), Postives = 147/303 (48.51%), Query Frame = 1
Query:    7 SSRSHVHWIIDSGCNGRHLTPQRDLFQTFRQV---VRSPIATAGKGELGVEGQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSYYNGIAISFEHTSRKEYSLRVIAGYENNEKRQQVVDTKLLHERLGHV-----RDLPTVAQQQGIRLSGKLG--VCSACEKSKASKQPVKRYREG--RRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
            ++ + + W++DSG +  H+T  RD F + R +   VR  IA   K +    G   ++    + +G   +   +V Y+PE   S++SV +M  + + A F   +    Y    +   +     Y LR +     +    +     ++H RLGH+       + T+A+      +G  G  VC++C   K       R+ E   +    L+LVHTD  GP+  KS GGC + + F++NYSR   +Y ++ KS+ L   K ++  +  A   +IKRLRSD GG+YTG+ F+ +   +GIK E   P
Sbjct:  156 NAMAKLKWLVDSGASS-HVTSTRDKFASMRDLRTPVRITIADGTKIDAVATGTVGLK----LMDGT-SVTLSDVLYIPEVEGSLISVSKMAEKDVVAQFSKAKCVFRYGDATVMKANCCGNVYKLRTVGDEVCHVVSTRTEPWAVMHARLGHIPFKRYEQVLTMAEGVTHVANGIKGDDVCASCYMGKMRADDFPRHPENLVKSAGVLDLVHTDGMGPMQTKSPGGCTYVMTFIDNYSRHVTVYFMKAKSDVLSKFKIYKAAMENATDNKIKRLRSDNGGEYTGRQFKGYLNRSGIKHEKTVP 452          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A7D9IUM0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUM0_PARCT)

HSP 1 Score: 117 bits (293), Expect = 2.400e-26
Identity = 87/307 (28.34%), Postives = 146/307 (47.56%), Query Frame = 1
Query:   28 WIIDSGCNGRHLTPQRDLFQTFRQVVR-SPIATAGKGELGVEGQGDVEGLIWIA---EGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFG-------SERRRSYYNGIAISFEHTSRKEYSLRVIAGYENNEKRQQVVDTK-----LLHERLGHVR--DLPTVAQQQ-----GIRLSGKLGVCSACEKSKASKQPVKRYREGRRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
            WIIDSG + +H+T  RDL   + Q     P+A      +   G G V+  + +    +   + I   V YVP+ + ++ SV    S+     FG         + +    G  +        E   R+    + +  R  + +       L H+R+ H+    +  +  ++      I  +GKL  C AC +  A + P K+  E + T+ LELVH+D AGP+  +SFGG ++ + F+++YSR   +Y ++ KSE L   K+++  VA     +IK LR+D GG+YT   F+ F  + GI+ E+  P
Sbjct:  121 WIIDSGAS-QHMTANRDLVVNYCQFPEPEPVALGDGRSVNAYGYGQVDITMILGNKEKDQRKSILTKVLYVPKLAKNLFSVRAAASKGKVVQFGHTLCWIKDSKGQVIARGRLV--------ESMYRLDCKVDKHGNRASIANETGGKLDLWHQRMAHLNAGQMKIMTSKELITGTDIPRTGKLSFCEACAEGMAHRAPFKQVGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVYPMKYKSEVLVKFKEWKAAVANQAECKIKTLRTDNGGEYTSTEFQDFLKKKGIRHETTVP 418          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A182GJG5_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GJG5_AEDAL)

HSP 1 Score: 115 bits (287), Expect = 2.510e-26
Identity = 89/299 (29.77%), Postives = 150/299 (50.17%), Query Frame = 1
Query:   28 WIIDSGCNGRHLTPQRDLFQTFRQVVRSP----IATAGKGELGVEGQGDVEGLIWIAEGA--MRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSYYNGIAISFEHTSRKEYSLRVIAGYENNEKRQ--QVVDTKLLHERLGHVRDLPTVAQQQGIRLSG-------KLGVCSACEKSKASKQPVKRYREGRRTKPLELVHTDTAGPVDKS-FGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
            +I+DSGC+  HL     +     ++ +SP    IA  G    G  G G + G I IA+G   + +I  +V YVPE  D++LSV+++V +  +  F  +      +G   +        Y +++ A  + + +    +V    L H RL H+      +  +G  ++G       +L  C  C ++K +K  +   R  R TKPLELVH+D  GP+  + + G ++ I F+++++ M  +Y++R K EAL  LK+F         +++KRLR D GG+Y  +  + FC   GI  E +PP
Sbjct:    3 FILDSGCS-EHLVSDVSVLSGVTKL-KSPFQIAIAMDGVKMCGTVG-GHISGRI-IADGEEDIEVILHDVIYVPECRDNLLSVQKLVERGNKVVFDRQGAAISRDGKVFARAVVKNGIYWIKIHAEQQPSVRAAVAEVNVNSLWHRRLAHLNMRSICSLVRGNMVTGVGDLLTEELDFCENCARAKQTKAHIGGTRT-RATKPLELVHSDVCGPITPTTYNGYKYFITFLDDFTHMVVVYLMRSKDEALAKLKEFHAMATAHFGIKMKRLRCDNGGEYRSRDMKAFCVVEGIVLEFVPP 296          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A2K3PJ60_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PJ60_TRIPR)

HSP 1 Score: 119 bits (297), Expect = 2.670e-26
Identity = 75/291 (25.77%), Postives = 148/291 (50.86%), Query Frame = 1
Query:   19 HVHWIIDSGCNGRHLTPQRDLFQTFRQVVRSPIATAGKGELGVEGQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSYYN--GIAISFEHTSRKEYSLRVIAGYENNEKRQQVVDTKLLHERLGHV--RDLPTVAQQQGIR----LSGKLGVCSACEKSKASKQPVKRYREGRRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQE 864
            + +W +DSGC+  H+   ++    F       +      ++ V+G+G+++    ++   +  +  NV+YVP    ++LS+ ++  + +   F ++  + Y++  G+  +   +  + Y +          K  +   T+L H+R GH+  + L T++++Q ++    L      C+ C   K  +  + +    R +  LEL+H+D  GP+  +S GGCR+ + F +++SR    Y+L++KS A  A K F+  V + +   I  LRSD+GG+YT   F  FC+  GIK++
Sbjct:  269 YENWFLDSGCSN-HMVGHKEWLFNFDDSYSDSVKLGDDSKMPVKGKGNIK----LSINNIVHVISNVYYVPGLKTNLLSIGQIQQKQVSIVFKNDECKVYHDDKGLLFTSHMSKNRMYVITAPVIMPMCLKTAKQESTQLWHDRYGHLSFKGLNTLSKRQIVKGLPELEDTEENCTDCLTGKQHRDTIPKQANWRASVKLELIHSDICGPISPQSNGGCRYFMTFTDDFSRKTWCYMLKEKSAAFEAFKNFKALVEKESGCSILCLRSDRGGEYTSNEFNDFCSNEGIKRQ 554          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A151SZR9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SZR9_CAJCA)

HSP 1 Score: 118 bits (295), Expect = 4.810e-26
Identity = 82/289 (28.37%), Postives = 149/289 (51.56%), Query Frame = 1
Query:   28 WIIDSGCNGRHLTPQRDLFQTFRQVVRSPIATAGKGELGVEGQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSYYNGIAISFEHTSRKEYSLRVIAGYENNEKRQQVVDTKLLHERLGHVRD--LPTVAQQ---QGIRLSGKLGVCSACEKSKASKQPVKRYREGRRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
            WI+DSG    H+TP+++ F ++       +     G   V G GDV          M+++   V +VP+   +++SV+ +     +  FGS + +     + ++    + K Y  + +   +N       ++  L H RL H+ +  L  +A++   QG++++ +L  CS C   K ++   K++   R++K L+LVH+D  GP+  KSF G  + + F+++ S+   +Y L Q+ + L   KQF   V R +  ++KR+R+D GG+Y G PF  +C ++GI  E  PP
Sbjct:  206 WIVDSGAT-LHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDV---FLQTNMGMQLLLRGVKHVPDVRFNLISVQILDDGGYDNHFGSGKWKLTKGNLVVARGEKNSKLYWTKALVAKDNVNAMD--MEASLWHRRLSHISEKGLNCLAKKDVLQGLKIA-ELEKCSHCMAGKQTRVSFKKHPPSRKSKLLQLVHSDVCGPLKVKSFSGALYFVTFIDDCSKKLWVYAL-QRKDVLERFKQFHALVERQSGKKLKRIRTDNGGEYCG-PFDVYCKQHGIAHEKTPP 485          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A251U1A0_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U1A0_HELAN)

HSP 1 Score: 118 bits (295), Expect = 5.220e-26
Identity = 74/292 (25.34%), Postives = 153/292 (52.40%), Query Frame = 1
Query:   28 WIIDSGCNGRHLTPQRDLFQTFRQVVRSPIATAGKGELGVEGQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSY--YNGIAISFEHTSRKEYSLRVIAGYENNEKRQQVVDTKLLHERLGHVRD--LPTVAQQQGIR----LSGKLGVCSACEKSKASKQPVKRYREGRRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
            W +D+G +  H+T ++D F    + V   +      ++ + G+G    L++  +   +++  +V+Y+P  + +ILS+ ++     + +   E  R +  +  + +  + +  + Y + +        K     +    H RLGH     + T+A+++ +R    +S    +C AC  +K +++   +  + R TKPLEL+H D  GP+  +++GG R+ ++ V+++SR   +Y+L+ K+EA    K F+  V + +  +IK LR+D+GG++  + F  FC E GIK+++  P
Sbjct:  363 WYLDNGASN-HMTGRKDAFAELNEAVTGQVRFGDGSKVEIRGKGS---LMFSCKNGEQLLVPDVYYIPALTSNILSLGQLTENGYDVWMHEEFLRVFDIHKRLVMRVQRSPNRLYKIVLKLAKPICLKASLDEEAWTWHARLGHANFHVVETMAKKKLVRGLPCISHPEQLCEACLVAKQTRKSFPKEAQWRATKPLELLHADLCGPITPQTWGGNRYFLLIVDDFSRYMWVYLLKTKNEAFEKFKIFKTRVEKESKYKIKMLRTDRGGEFNSQVFIDFCNETGIKRQTTAP 650          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A6S7FZB6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FZB6_PARCT)

HSP 1 Score: 117 bits (294), Expect = 5.320e-26
Identity = 88/306 (28.76%), Postives = 143/306 (46.73%), Query Frame = 1
Query:   28 WIIDSGCNGRHLTPQRDLFQTFRQVVR-SPIATAGKGELGVEGQGDVEGLIWIA---EGAMRIIFCNVFYVPEASDSILSVERMVSQ-----------WMEAFFGSERRRSYYNGIAISFEHTSRKEYSLRVIAGYENNEKRQQVVDTKLLHERLGHVR--DLPTVAQQQ-----GIRLSGKLGVCSACEKSKASKQPVKRYREGRRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
            WIIDSG + +H+T  RDL   + +     P+A      +   G G V+  + +    +   + I   V YVP+ + ++ S     S+           W++   G    R    G     +    K  +   IA        +      L H+R+ H+    +  +A ++      I  +GKL VC  C + KA + P K   E + T+ LELVH+D AGP+  +SFGG ++ + F+++YSR   +Y ++ KSE L   K++E  V      +IK L++D GG+YT   F+ F  E GI+ E+  P
Sbjct:  259 WIIDSGAS-QHMTANRDLLVNYCEFPEPEPVALGDGRSVNAYGYGQVDITMILGNKEKDQRKSILTKVLYVPKLATNLFSARAAASKGKVVQFGHTLCWIKDSKGQVVARGRLVGNMYRLDCKVNKHGNRTSIAN-------ETGAKLDLWHQRMAHLNAGQMKIMASKELITGTDIPGTGKLSVCEPCAEGKAHRAPFKPAGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVYPMKYKSEVLEKFKEWEAAVTNQAECKIKTLQTDNGGEYTSTEFQDFLKEKGIRHETTVP 556          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A6A3GLF6_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GLF6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.700e-25
Identity = 82/300 (27.33%), Postives = 150/300 (50.00%), Query Frame = 1
Query:   22 VHWIIDSGCNGRHLTPQRDLFQTFRQV---VRSPIATAGKGELGVEGQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSYYNGIAISFEHTSRKEYSLRVIAG---YENNEKRQQVVDTKLLHERLGHV---RDLPTVAQQQGI-RLSGKLG--VCSACEKSKASKQPVKRYREG--RRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
              W++DSG +  H+T  RD F + +++   VR  IA   K +    G   ++    + +G   +   +V Y+PE   S++SV ++  + + A F  ++    Y    +         Y L+ +     +     R++     ++H RLGH+   R    +    G+ R++      VC+ C   K  +    R  E   +    L+L+H+D  GP+  K+ GGC +A+ F++++SR   +Y +++K+E L   K+F+ D+  A   +IKRLRSD GG+YTG+ F+++ ++ GI+ E   P
Sbjct:    4 TEWLVDSGASS-HMTSVRDKFVSMKELKTPVRITIADGKKIDAVAMGTVGLK----LMDGT-SVTLSDVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVFRYGDATVMEAKRCGNVYKLKTVGDEVCHSATTSRKE--PWAVVHARLGHIPYKRYEQLLTMADGVPRIADAPSDHVCAGCCMGKMREDNFSRNPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVP 295          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A6G0JJT4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JJT4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.780e-25
Identity = 85/305 (27.87%), Postives = 152/305 (49.84%), Query Frame = 1
Query:    7 SSRSHVHWIIDSGCNGRHLTPQRDLFQTFRQV---VRSPIATAGKGELGVEGQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSYYNGIAISFEHTSRKEYSLRVIAG---YENNEKRQQVVDTKLLHERLGHV---RDLPTVAQQQGI-RLSGKLG--VCSACEKSKASKQPVKRYREG--RRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
            S+     W++DSG +  H+T  RD F + +++   VR  IA   K +    G   ++    + +G   +   +V Y+PE   S++SV ++  + + A F  ++    Y    +      R  Y L+ +     +     R++     ++H RLGHV   R    +    G+ R++      VC+ C   K  +    R  E   +    L+L+H+D  GP+  K+ GGC +A+ F++++SR   +Y +++K+E L   K F+ D+  A   +IKRLRSD GG+YTG+ F+++ ++ GI+ E   P
Sbjct:  117 SAMGKSEWLVDSGASS-HMTSVRDKFVSMKELKTPVRITIADGKKIDAVAMGTVGLK----LMDGT-SVTLSDVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVVRYGDATVMEAKRCRNVYKLKTVGDEVCHAATTSRKE--PWAVVHARLGHVPYKRYEQLLTMADGVPRIADAPSDHVCAGCCMGKMREDNFSRNPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVP 413          
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Match: A0A6G0MB21_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MB21_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.650e-25
Identity = 82/303 (27.06%), Postives = 152/303 (50.17%), Query Frame = 1
Query:   22 VHWIIDSGCNGRHLTPQRDLFQTFRQV---VRSPIATAGKGELGVEGQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGSERRRSYYNGIAISFEHTSRKEYSLRVIAG---YENNEKRQQVVDTKLLHERLGHV---RDLPTVAQQQGI-RLSGKLG--VCSAC-----EKSKASKQPVKRYREGRRTKPLELVHTDTAGPVD-KSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFERDVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP 876
              W++DSG +  H+T  RD F + +++   VR  IA   K    ++        + + +G   +   +V Y+PE   S++SV ++  + + A F  ++    Y    +         Y  + + G   +     R+++    ++H RLGH+   R    +    G+ R++ +    VC+ C      K K S+ P K  +       L+L+H+D  GP+  K+ GGC +A+ F++++SR   +Y +++K+E L   K F+ D+  A   +IKRLRS+ GG+YTG+ F+++ ++ GI+ E   P
Sbjct:    4 TEWLVDSGAS-LHMTSVRDKFVSMKELKTPVRITIADGKK----IDAVAMDTVRLKLMDGT-SVTLSDVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVFRYGDATVMDAKRCGNVYKTKTVGGEVCHAATTSRKEL--RAVVHARLGHIPYKRYEQLLTMADGVPRIADEPSDHVCAGCCMGKMRKDKFSRSPEKTVKSAG---VLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSENGGEYTGRLFKEYLSKQGIRHEKTVP 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19678.5005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329RBX0_9STRA5.110e-2729.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9IUM0_PARCT2.400e-2628.34Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A182GJG5_AEDAL2.510e-2629.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3PJ60_TRIPR2.670e-2625.77Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A151SZR9_CAJCA4.810e-2628.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A251U1A0_HELAN5.220e-2625.34Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A6S7FZB6_PARCT5.320e-2628.76Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6A3GLF6_9STRA1.700e-2527.33Integrase catalytic domain-containing protein n=2 ... [more]
A0A6G0JJT4_9STRA1.780e-2527.87Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6G0MB21_9STRA2.650e-2527.06Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19678contigH-paniculata_contig19678:3710..4669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue4.2e-28
Seed eggNOG ortholog67593.Physo140665
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size876
Cds size876
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929489.8859344-CDS-H-paniculata_contig19678:3709..41021622929489.8859344-CDS-H-paniculata_contig19678:3709..4102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19678 3710..4102 +
1691480884.050784-CDS-H-paniculata_contig19678:3709..41021691480884.050784-CDS-H-paniculata_contig19678:3709..4102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19678 3710..4102 +
1622929489.901084-CDS-H-paniculata_contig19678:4186..46691622929489.901084-CDS-H-paniculata_contig19678:4186..4669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19678 4187..4669 +
1691480884.0691974-CDS-H-paniculata_contig19678:4186..46691691480884.0691974-CDS-H-paniculata_contig19678:4186..4669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19678 4187..4669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19678.5005.1prot_H-paniculata_contig19678.5005.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19678 3710..4669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19678.5005.1

>prot_H-paniculata_contig19678.5005.1 ID=prot_H-paniculata_contig19678.5005.1|Name=mRNA_H-paniculata_contig19678.5005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=292bp
MGSSRSHVHWIIDSGCNGRHLTPQRDLFQTFRQVVRSPIATAGKGELGVE
GQGDVEGLIWIAEGAMRIIFCNVFYVPEASDSILSVERMVSQWMEAFFGS
ERRRSYYNGIAISFEHTSRKEYSLRVIAGYENNEKRQQVVDTKLLHERLG
HVRDLPTVAQQQGIRLSGKLGVCSACEKSKASKQPVKRYREGRRTKPLEL
VHTDTAGPVDKSFGGCRFAIIFVNNYSRMRKLYILRQKSEALWALKQFER
DVARANSLRIKRLRSDQGGKYTGKPFRQFCAENGIKQESLPP
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mRNA from alignment at H-paniculata_contig19678:3710..4669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19678.5005.1 ID=mRNA_H-paniculata_contig19678.5005.1|Name=mRNA_H-paniculata_contig19678.5005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=960bp|location=Sequence derived from alignment at H-paniculata_contig19678:3710..4669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTCATCTAGATCACACGTACACTGGATAATTGATTCGGGCTGCAA CGGACGTCACCTGACCCCGCAACGCGACCTCTTCCAAACTTTTCGCCAGG TTGTACGTAGTCCCATTGCCACAGCGGGCAAGGGGGAGTTGGGTGTAGAG GGGCAAGGAGACGTGGAAGGTTTAATTTGGATTGCGGAAGGAGCCATGCG CATCATCTTCTGCAATGTATTTTATGTACCTGAAGCATCAGACAGTATTT TATCGGTTGAGCGGATGGTGAGCCAATGGATGGAGGCGTTCTTTGGTTCG GAACGGAGACGGTCGTATTACAATGGGATAGCGATCTCGTTCGAACACAC ATCGCGGAAGGAGTATTCATTGCGTGTGATAGCGGGGTACGAAGTGGAGA TACAGGCCGCAAAACGGGCCATCGGAAAACAAGTGAAGGTTCTTTGATTA TTCAGCAACGACTGGACCACCGCGAAGAACAACGAGAAGAGGCAACAGGT GGTGGACACGAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACCTTC CCACAGTTGCGCAGCAACAAGGCATAAGGTTAAGCGGAAAGCTCGGTGTC TGCTCGGCGTGTGAGAAGAGTAAAGCGTCGAAGCAGCCTGTAAAAAGGTA TCGAGAAGGGCGGAGGACCAAGCCGTTGGAGCTGGTGCACACTGACACAG CCGGACCGGTAGACAAGTCCTTCGGAGGATGTCGTTTCGCCATCATCTTC GTCAACAACTACAGCAGAATGCGCAAACTCTATATCTTGCGACAAAAGTC GGAGGCGCTATGGGCCCTGAAGCAGTTCGAGAGGGACGTAGCGAGGGCAA ACAGTTTGCGGATTAAGCGTCTTCGGTCGGATCAGGGAGGAAAATATACT GGGAAGCCTTTTAGGCAATTCTGCGCGGAAAATGGCATCAAGCAGGAGTC TCTGCCGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig19678:3710..4669+

>mRNA_H-paniculata_contig19678.5005.1 ID=mRNA_H-paniculata_contig19678.5005.1|Name=mRNA_H-paniculata_contig19678.5005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig19678:3710..4669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTCATCTAGATCACACGTACACTGGATAATTGATTCGGGCTGCAA
CGGACGTCACCTGACCCCGCAACGCGACCTCTTCCAAACTTTTCGCCAGG
TTGTACGTAGTCCCATTGCCACAGCGGGCAAGGGGGAGTTGGGTGTAGAG
GGGCAAGGAGACGTGGAAGGTTTAATTTGGATTGCGGAAGGAGCCATGCG
CATCATCTTCTGCAATGTATTTTATGTACCTGAAGCATCAGACAGTATTT
TATCGGTTGAGCGGATGGTGAGCCAATGGATGGAGGCGTTCTTTGGTTCG
GAACGGAGACGGTCGTATTACAATGGGATAGCGATCTCGTTCGAACACAC
ATCGCGGAAGGAGTATTCATTGCGTGTGATAGCGGGGTACGAAATGGGGT
CATCTAGATCACACGTACACTGGATAATTGATTCGGGCTGCAACGGACGT
CACCTGACCCCGCAACGCGACCTCTTCCAAACTTTTCGCCAGGTTGTACG
TAGTCCCATTGCCACAGCGGGCAAGGGGGAGTTGGGTGTAGAGGGGCAAG
GAGACGTGGAAGGTTTAATTTGGATTGCGGAAGGAGCCATGCGCATCATC
TTCTGCAATGTATTTTATGTACCTGAAGCATCAGACAGTATTTTATCGGT
TGAGCGGATGGTGAGCCAATGGATGGAGGCGTTCTTTGGTTCGGAACGGA
GACGGTCGTATTACAATGGGATAGCGATCTCGTTCGAACACACATCGCGG
AAGGAGTATTCATTGCGTGTGATAGCGGGGTACGAAAACAACGAGAAGAG
GCAACAGGTGGTGGACACGAAGTTACTACACGAGCGACTTGGGCATGTTC
GAGACCTTCCCACAGTTGCGCAGCAACAAGGCATAAGGTTAAGCGGAAAG
CTCGGTGTCTGCTCGGCGTGTGAGAAGAGTAAAGCGTCGAAGCAGCCTGT
AAAAAGGTATCGAGAAGGGCGGAGGACCAAGCCGTTGGAGCTGGTGCACA
CTGACACAGCCGGACCGGTAGACAAGTCCTTCGGAGGATGTCGTTTCGCC
ATCATCTTCGTCAACAACTACAGCAGAATGCGCAAACTCTATATCTTGCG
ACAAAAGTCGGAGGCGCTATGGGCCCTGAAGCAGTTCGAGAGGGACGTAG
CGAGGGCAAACAGTTTGCGGATTAAGCGTCTTCGGTCGGATCAGGGAGGA
AAATATACTGGGAAGCCTTTTAGGCAATTCTGCGCGGAAAATGGCATCAA
GCAGGAGTCTCTGCCGCCTAACAACGAGAAGAGGCAACAGGTGGTGGACA
CGAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACCTTCCCACAGTT
GCGCAGCAACAAGGCATAAGGTTAAGCGGAAAGCTCGGTGTCTGCTCGGC
GTGTGAGAAGAGTAAAGCGTCGAAGCAGCCTGTAAAAAGGTATCGAGAAG
GGCGGAGGACCAAGCCGTTGGAGCTGGTGCACACTGACACAGCCGGACCG
GTAGACAAGTCCTTCGGAGGATGTCGTTTCGCCATCATCTTCGTCAACAA
CTACAGCAGAATGCGCAAACTCTATATCTTGCGACAAAAGTCGGAGGCGC
TATGGGCCCTGAAGCAGTTCGAGAGGGACGTAGCGAGGGCAAACAGTTTG
CGGATTAAGCGTCTTCGGTCGGATCAGGGAGGAAAATATACTGGGAAGCC
TTTTAGGCAATTCTGCGCGGAAAATGGCATCAAGCAGGAGTCTCTGCCGC
CT
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