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Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 410..443
e-value: 2.5E-5
score: 22.2
coord: 233..266
e-value: 8.8E-6
score: 23.6
coord: 128..162
e-value: 1.7E-4
score: 19.5
coord: 373..406
e-value: 6.7E-5
score: 20.8
coord: 163..197
e-value: 1.1E-8
score: 32.7
coord: 198..232
e-value: 5.2E-6
score: 24.3
coord: 303..337
e-value: 7.6E-9
score: 33.2
coord: 268..302
e-value: 1.8E-5
score: 22.6
coord: 338..371
e-value: 5.6E-5
score: 21.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 288..347
e-value: 1.5E-12
score: 47.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 373..403
e-value: 0.0046
score: 17.1
coord: 129..158
e-value: 0.01
score: 16.0 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 160..207
e-value: 3.3E-12
score: 46.4
coord: 406..453
e-value: 2.2E-8
score: 34.2
coord: 230..277
e-value: 8.0E-9
score: 35.6 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 266..300
score: 10.907 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 336..370
score: 10.764 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 371..405
score: 9.986 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 301..335
score: 12.693 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 126..160
score: 10.698 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 161..195
score: 12.671 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 442..476
score: 8.67 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 406..441
score: 9.767 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 231..265
score: 10.611 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 196..230
score: 12.189 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 89..258
e-value: 6.1E-46
score: 159.2 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 382..493
e-value: 2.3E-23
score: 84.5
coord: 272..381
e-value: 3.7E-34
score: 119.6 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 103..258
coord: 218..346
coord: 348..488 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig9988.17565.1 ID=prot_H-paniculata_contig9988.17565.1|Name=mRNA_H-paniculata_contig9988.17565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=495bp
MALRYITNCAIVPIKTLKRSSLVPRSAVIAWPPSAGISSAAQETKAPSVS
GRQRSKGPASYASADCDGDRRAGWQTSGARNRDRDSRDLRAIQQAHVGRL
KQAGIRRDWHKAKQVLQEARARSIMNVYIYSAAISVAAKCGKWKSAVRLL
ASMRGEGVRPNVVSYNSAIKACGDGGQWEQALSLLREMQGAGISPDIVSY
NSTIKACGDCGQWELSLSLLTEMQREGIAPDVVSYNSAVKACGDGGQWEQ
ALSLLRDMYREDITRDVVSYSSAIKACGDGHQWEQAISLLRQMQREEVAP
NVVSYNSAITACGNGGQWEQALLLVDEMKREGISPNVVSYRSAMKACEDG
GQWEQALSLFGQMQREGIALDMVTCRSAMKACGDGGQWEQAMSLLRQMQM
HGIARDITGYNSAIMACVDGGRWEQAKSLLTEMQRERGVTPDVTSYKLVI
QACGMAGECQEAVATWREAQTEGVAALNINTYNATIFAMRGSKT* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
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