prot_H-paniculata_contig998.17557.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig998.17557.1
Unique Name	prot_H-paniculata_contig998.17557.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	171

Homology

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BLAST of mRNA_H-paniculata_contig998.17557.1 vs. uniprot
Match: A0A6H5JMU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU7_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 4.030e-56
Identity = 102/165 (61.82%), Postives = 119/165 (72.12%), Query Frame = 0

Query:    1 MPRLDHRRLESLFFPSDGAPKSLQGTGEAPTARRRNLRLALGFQMVYAAFMLMFAGFEMYTDG-LVHKRPPAELLKVMAYSFSCLSVYRSVPMYLRLMVIWTITTAFSGVYQSLVWLENSSGSETEHILVKALLMLSIGGMVGNVMGIVTMFPSGGSLRSRHRRR 164
            MPRLDHR+LE L  P  G    LQG GE    RRR +  A+  QM+YAAF L FA +E+ T G LVH RPPAEL KV+AYS SCL VYRSV +YLRLM+IWTITTAFSGV+QSL+WLENS GS  E  LV  +L+LSI GM GN++G VT+FPS G    + RRR
Sbjct:    1 MPRLDHRKLERLVSP--GGVSCLQGDGEDVALRRRRVAGAVSLQMMYAAFTLGFALYEISTGGSLVHMRPPAELFKVVAYSVSCLLVYRSVSLYLRLMLIWTITTAFSGVFQSLLWLENSGGSAIERGLVWTMLVLSIAGMAGNIIGAVTVFPSVGGSSGKARRR 163

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig998.17557.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig998.17557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JMU7_9PHAE	4.030e-56	61.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 97..116
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 117..127
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..61
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 155..170
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 128..154
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 62..72
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 91..96
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 73..90
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..38
None	No IPR available	TMHMM	TMhelix		coord: 129..151
None	No IPR available	TMHMM	TMhelix		coord: 94..116
None	No IPR available	TMHMM	TMhelix		coord: 39..61

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig998	contig	H-paniculata_contig998:18597..28436 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig998.17557.1	mRNA_H-paniculata_contig998.17557.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig998 18374..28952 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig998.17557.1 ID=prot_H-paniculata_contig998.17557.1|Name=mRNA_H-paniculata_contig998.17557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MPRLDHRRLESLFFPSDGAPKSLQGTGEAPTARRRNLRLALGFQMVYAAF
MLMFAGFEMYTDGLVHKRPPAELLKVMAYSFSCLSVYRSVPMYLRLMVIW
TITTAFSGVYQSLVWLENSSGSETEHILVKALLMLSIGGMVGNVMGIVTM
FPSGGSLRSRHRRRLPAKES*